LOC120564977 (zgc:110434,LOC102204254,LOC103462478,LOC107386469,LOC101485372,LOC103381127,LOC103379246,LOC103395676)


Basic Information

Item Value
gene id LOC120564977
gene name zgc:110434,LOC102204254,LOC103462478,LOC107386469,LOC101485372,LOC103381127,LOC103379246,LOC103395676
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4373826 ~ 4374754 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810251.1
TTAAACTGAGGACCGGCTTTGAGATGGTGACGCTGCTTCAGACCTCtggctgctgattggctcagcGCCGAATCTCCGCTGCTGATTGGTGCGGCAATCCTTTCAACAAGCCCGCCAAAACTCAGAGCTCTCCGCGGACATAAAAGGAGGGTTTGGGCTGTTGTTGGCTCACGCTCGCTTTGAGAAATCATCGTAAACATGTCTGGACGAGGAAAAACCGGAGGCAAAGCCAGAGCTAAGGCCAAGACCAGGTCTTCTCGTGCCGGGCTTCAGTTCCCAGTCGGCCGTGTCCACAGGCTGCTCCGCAAAGGGAACTACGCTCAGCGTGTCGGTGCCGGAGCCCCCGTGTACCTGGCGGCCGTGCTGGAGTACCTGACCGCTGAGATCCTGGAGCTGGCTGGAAACGCTGCCCGCGACAACAAGAAGACCCGCATCATCCCCCGCCATCTGCAGCTGGCCGTCCGCAACGACGAGGAGCTCAACAAGCTGCTGGGCGGAGTGACCATCGCTCAGGGCGGCGTGCTGCCCAACATCCAGGCCGTCCTGCTGCCCAAGAAGACCGAGAAGCCCGCCAAGAAGTAAACAACCGAGGCTCTCTGACTGCTGGAAACCGGCCCCCCAAAaggctcttttaagagccaaACACTTCTGATAAAGAGCGCCGATTCCCATGTTTCTCTTCTGCACTTGCACCTTTTAATCTTATGATTCACACATTAATGATTTTAGTTTACCTGTGGATTGTGGGTTTACATGAATGTATTAATTGCCGTGGATGACTATATTATGATTAAGTTGGACTTGTGTCTgatgaacacagaaaaataCACATTGCAGGCAATATATGCATTTAAAGAAGAATTTCCTATTTGTGTGTTTACTATAAATATCCCCTTTTAACTGCTAAggaattaattatttatgtgaag

Function

NR:

description
PREDICTED: histone H2A-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005874 microtubule cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810251.1 True 929 mRNA 0.51 1 4373826 4374754

Neighbor

gene id symbol gene type direction distance location
LOC120565398 LOC108262407,LOC104935308,LOC104932967 coding upstream 7265 4366122 ~ 4366561 (+)
LOC120565392 LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799 coding upstream 28697 4344659 ~ 4345129 (+)
LOC120565402 LOC106958509,LOC103391927,LOC106963510,LOC107690788 coding upstream 212384 4160909 ~ 4161442 (+)
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding upstream 222823 4146493 ~ 4151003 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding upstream 231720 4141578 ~ 4142106 (+)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 33889 4408643 ~ 4419781 (+)
LOC120565669 NA coding downstream 64586 4439340 ~ 4443524 (+)
LOC120565674 NA coding downstream 140298 4515052 ~ 4519593 (+)
LOC120565681 NA coding downstream 224718 4599472 ~ 4603153 (+)
LOC120565686 LOC104953734 coding downstream 283007 4657761 ~ 4662185 (+)
LOC120565406 NA non-coding upstream 33228 4332961 ~ 4340598 (+)
G93170 NA non-coding upstream 74068 4281451 ~ 4299758 (+)
G93169 NA non-coding upstream 90531 4282869 ~ 4283295 (+)
LOC120565405 NA non-coding upstream 108461 4235808 ~ 4265365 (+)
G93149 NA non-coding upstream 186364 4179115 ~ 4187462 (+)
G93281 NA non-coding downstream 38507 4413261 ~ 4413921 (+)
G93294 NA non-coding downstream 85517 4460271 ~ 4465434 (+)
G93293 NA non-coding downstream 86375 4461129 ~ 4467311 (+)
G93288 NA non-coding downstream 121299 4496053 ~ 4502052 (+)
G93286 NA non-coding downstream 125795 4500549 ~ 4505974 (+)
LOC120565391 NA other upstream 60311 4284755 ~ 4313515 (+)
G93150 NA other upstream 156000 4174602 ~ 4217826 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 550044 3714919 ~ 3823782 (+)
G92848 NA other upstream 767001 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 778438 3540034 ~ 3595388 (+)
trmt1l trmt1l other downstream 310470 4685224 ~ 4713233 (+)
G93613 NA other downstream 1660615 6035369 ~ 6051520 (+)
G93638 NA other downstream 1827331 6202085 ~ 6214017 (+)
rhpn1 rhpn1 other downstream 1980138 6354892 ~ 6381598 (+)
G93938 NA other downstream 2975056 7349810 ~ 7350587 (+)

Expression


Co-expression Network