foxd3 (foxd3,LOC102785247)


Basic Information

Item Value
gene id foxd3
gene name foxd3,LOC102785247
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12661919 ~ 12663893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810268.1
TCTATCAGACAGTCCTTTTAAAGCTCTGGCCTTTAAAAGCAGCAGATGTGTCATCTCGACTTGGTTCTCCAAATATCACTAGGAAATATACGCACCGAGAAGGGACGGCTGAGCGCAAAACATCTCCAAACAACTTCGATGCAAGAATCGCCGCTTTACACAGGCCTGCTCACTTACCGAGTGGAGAAATatttgtagaagttgaagtttCTTTGGCTTGACTGGCTTGCCGCCGGTTCAAccacatttagattttttggaGACATCCGATCTCTTGACAGGGGCGACCAGAAGAAGTCCAGCAGACCCGCCGTGTGTGCGCACAGACCGCGCTGGTCTCGCCATACCCATCACACCCGGCTCGGCAGActtcaaaaacaaatacaaaaagtgtAAGTAAGCCGTGAGATGACCCTGTCTGGAGGCAGCGAACGAGCCAGCGACATGTCCGGCCAAACTGTGCTCACGGCGGAGGACGTGGATATCGACGTGGTGGGCGAGGGAGACGAGGAGGGCATGGAGAGGGTGGACAGCGACTGCGACAGCCCGGTGGGAGGCATCCTGCACGACCTCCGAGGAGAAGCAGGCGACGAGGAAGATGAGATCGAGGTGGAGAAGGAGGAGATGAGGTCCGGTGGAGGGAGTCCGTGCTGCGAGAGCTCCGGGGAGGGAGAGACGGGCACCGGAAAGGGAGAGGGTCAAGACCAGAGCGCAACGGGAGGGGGGATCCAGAAGCCCAAAAACAGCCTGGTAAAGCCGCCTTACTCCTACATCGCCCTCATCACCATGTCCATCCTCCAGAGCCCGCAGAAAAAGCTCACCCTCAGCGGGATCTGCGAGTTCATCAGCAGCCGTTTCCCGTATTACCGAGAAAAGTTCCCGGCGTGGCAAAACTCCATTCGCCACAACTTGTCCCTCAACGACTGCTTTGTGAAAATCCCCCGGGAACCTGGCAACCCCGGCAAGGGCAACTACTGGACCCTGGATCCCGCTTCGGAGGACATGTTCGACAACGGCAGCTTCctcaggaggaggaaaaggtTCAAGAGAGTTCAGCCGGACATGCTCAGGGACCAGACCGCTCTAATGATGCAAAGTTTCGGTGCGTACAGCCTTGGGGGCCCGTACGGGAGGCACTACGGGATCCACCCGGCTTATTCCCATCCGGCGGCTTTGCAGTACCCGTACATCCCCCCTGTAGGTCCCATGCTGCCCCCGGGCGTCCCTCTCCTGTCCTCGGCGGAGCTGAACAGAAAAGCGTTTAACTCCCATCTCAGCCCGAGTCTTCAACTTCAGCTCAACAGTCTGAGCACAGCGTCCATGATCAAATCCGAGCCTTCAAACAGACCGTCTTTTAGTATAGAGAACATCATCGGCGTCTCCAGCGCCTCCTCGGTCTCACCGGGCGCTGCTTTCCTGCGGCCTCCGGTGACCGTTCAGTCGGCCCTGCTGAGCGCGCAGTCCCTCTCTCTGAGCCGGACCTCCGCCGCTATCGCTCCCATCCTCAGTGTACCGTCAAATATCCTTTCTGGACATGTTTTACCCTCagcagcggcggcggcggcggcagtGTCCAAATGGCCTTCACAATGACTTCTAACGAAGAGAAGATAAACTCTTATTTTTATATAGAGACATTATTACGGAGGGAGTGTGAAAAGCACAAATCAATAGGCAACACTGGACTCTGTAGCCATGTAAAGACTgttgaaacagagaaaaaaaagaaaaaggagatattTCTGTACAGGTAATATTTGTAAATATTtgtacaaaaaataataataataataataatgattttacctgtctttttttctttggttCCTGTTTGAGATCtgtgattattattttacattttcttttttgtatcgGAAGCTCAACTGGACACACTTTTTGCTTCCTTTTCATACAAGACACAAAAAGCTCTGAAAAATAGTCTGTTTATAAAAAAGTTCAAATATATGTAATTTTA

Function

symbol description
foxd3 Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within several processes, including iridophore differentiation; negative regulation of macromolecule metabolic process; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural crest; neural keel; and neural plate. Human ortholog(s) of this gene implicated in vitiligo. Orthologous to human FOXD3 (forkhead box D3).

NR:

description
forkhead box protein D3

GO: NA

KEGG:

id description
K09397 FOXD; forkhead box protein D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810268.1 True 1975 mRNA 0.52 1 12661919 12663893

Neighbor

gene id symbol gene type direction distance location
atg4c atg4c coding upstream 139485 12512606 ~ 12522434 (+)
angptl3 angptl3 coding upstream 162872 12494754 ~ 12499047 (+)
usp1 NA coding upstream 202774 12450052 ~ 12459145 (+)
ebna1bp2 NA coding upstream 600294 12056138 ~ 12061625 (+)
ap1m3 LOC104919037,LOC103355575,LOC103463064,LOC107392936,LOC106528254 coding upstream 647485 11981529 ~ 12014434 (+)
alg6 alg6,LOC102784959 coding downstream 6328 12670221 ~ 12690258 (+)
efcab7 efcab7 coding downstream 39251 12703144 ~ 12717685 (+)
pgm1 pgm1 coding downstream 56198 12720091 ~ 12730969 (+)
cachd1 cachd1 coding downstream 232394 12896287 ~ 12994764 (+)
ak4 ak4,LOC102785469 coding downstream 485957 13149850 ~ 13158641 (+)
G94813 NA non-coding upstream 741882 11916631 ~ 11920037 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding upstream 1002847 11651522 ~ 11659072 (+)
G94747 NA non-coding upstream 1084658 11576788 ~ 11577261 (+)
G94706 NA non-coding upstream 1421682 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 1466989 11194647 ~ 11194930 (+)
G94997 NA non-coding downstream 202019 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 331342 12995235 ~ 12995654 (+)
G95027 jak1,LOC102785183 non-coding downstream 443796 13107689 ~ 13112320 (+)
G95040 NA non-coding downstream 482412 13146305 ~ 13146795 (+)
LOC120564967 NA non-coding downstream 708551 13372444 ~ 13375668 (+)
lrp8 LOC103355569 other upstream 218839 12161638 ~ 12443080 (+)
znhit6 znhit6,LOC102790327 other upstream 840037 11789135 ~ 11821882 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 1203773 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 1713603 10946932 ~ 10948316 (+)
G94598 NA other upstream 1720675 10916925 ~ 10941244 (+)
ror1 ror1 other downstream 78912 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 341675 13005568 ~ 13100445 (+)
G95046 NA other downstream 509132 13173025 ~ 13220372 (+)
LOC120565776 NA other downstream 671841 13335734 ~ 13342098 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other downstream 715505 13379398 ~ 13382747 (+)

Expression


Co-expression Network