LOC120564993 (LOC104965956)


Basic Information

Item Value
gene id LOC120564993
gene name LOC104965956
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21073118 ~ 21075438 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810280.1
GGCATGTAGCATACTGTCTAACGGTCTGTGAGAGCAGTTGACTACTGGCTTCAGCGACTTCTGCTCACTCTCTGCTAAGTTTCCAAACAAGTTATCAgagtttttttaattcattgctCTCTTGCCGCTCTGCTGTTGTCTGGATAACATGGCCAGCTCGGGACTTCAGCTCCTCGGTTACTTCCTCGCACTTATCGGTCTCGCGGCCACTGTTGCCGCTACTTTGATGGTTGAATGGAAGAAGCAGTACCAGGGCAAAACTTACCGCATCTATGAGGGCTTGTGGATGAGCTGCAGTGGCAATGAGAGAACAACCTGTGAATTTCACCAGTACCTCCTGAAGCTGCCAcCTGAGGTCCAGGCTACCAGGGCCGTGATGCTGGTCAGcgtcttcctctcctctgtggcGCTGATGGTCTCAACCGTGGGAATGAAATGCACCCGCTTCATGGACGGCAAAGCTGAGTTCAAATCCGCAGTAGCTATGATTGGAGGAATCATGTTCCTGATTGCAGgtttattgaccattacCATGACTTCCTGGTATGTCAAAATGATTGTCCAGAAATCCTATGAATACCATAGCCTGACCagTGCTGAGTTTGGTAATGCCGTCTTTGTCAGCTGGGCTGGCGGCTTCTTCACTATGGCTGGAGGGGCTTTCCTAAGCTGTCGGAGATGCTCAGGGTCCCAGACTGGGTCCATCAGCTCCAACCACCTCCTCCCCACCACCCACCCTAAGTCAAACTACGTCTAGTGGAGGAGGGCAGGGGAGAGGCCCTGATACAGTCATTTCAGCGGTGAATTTACAAACTGGAGCAGGTTGTGTTTTTACGATGTGGAAAATGCCAATGCAGGATTATAAATACTACCTATCGAACATGAACACAGTTACCAGGATCAGAATTACACACACGATCAGTCTGTTTGTACTGACTTTAAATCCCAGTTTATAGCTTGAGCTTTTCTATTTT

Function

NR:

description
PREDICTED: claudin-1-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810280.1 True 974 mRNA 0.49 4 21073118 21075438

Neighbor

gene id symbol gene type direction distance location
ccdc50a ccdc50 coding upstream 12279 21036277 ~ 21060839 (+)
usp13 NA coding upstream 205130 20825520 ~ 20867988 (+)
ndufb5 ndufb5 coding upstream 248543 20820248 ~ 20824575 (+)
actl6a actl6a coding upstream 256232 20810183 ~ 20816886 (+)
mfn1b mfn1 coding upstream 298305 20756787 ~ 20774813 (+)
p3h2 p3h2 coding downstream 4196 21079634 ~ 21146410 (+)
cpox cpox,LOC102782768 coding downstream 77140 21152578 ~ 21157082 (+)
tmem47 tmem47,LOC102234870,LOC103464126 coding downstream 107365 21182803 ~ 21189074 (+)
nexn nexn coding downstream 127494 21202932 ~ 21215185 (+)
mindy4 NA coding downstream 142293 21217731 ~ 21226366 (+)
G96898 NA non-coding upstream 10814 21061672 ~ 21062304 (+)
G96871 NA non-coding upstream 63808 21005731 ~ 21009310 (+)
G96782 NA non-coding upstream 292200 20776558 ~ 20780918 (+)
G96777 NA non-coding upstream 323222 20749212 ~ 20749896 (+)
G96775 NA non-coding upstream 329343 20743067 ~ 20743775 (+)
G96906 LOC103364786,LOC104920247 non-coding downstream 51625 21127063 ~ 21174307 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding downstream 235474 21310912 ~ 21314520 (+)
G97009 NA non-coding downstream 292680 21368118 ~ 21456800 (+)
G97011 dmap1 non-coding downstream 297503 21372941 ~ 21373533 (+)
G97064 NA non-coding downstream 583112 21658550 ~ 21676349 (+)
prkacba prkacb other upstream 508294 20548999 ~ 20564824 (+)
G96513 NA other upstream 1541441 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2287482 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2408005 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 3213707 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 335898 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 479456 21554894 ~ 21557731 (+)
G97093 NA other downstream 615459 21690897 ~ 21782000 (+)
G97321 NA other downstream 1208208 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1410073 22485511 ~ 22491235 (+)

Expression


Co-expression Network