rangrf (rangrf,LOC102787952)


Basic Information

Item Value
gene id rangrf
gene name rangrf,LOC102787952
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36985858 ~ 36986961 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810312.1
gaagacccctgctttagactacaccactgggtgCATGTCATGTCTCGCCTGTAGATGGCAGCAGTGCGCATGACATGCGTCTAACGGGCCTAAAATGTaacgagaagaagaagagaaacttTTTACCGGAAGAGAGTTCTGGCTAGCTGAGAGATGCAGGGTGCCGGAGGCTGCGCCGGTCAGTCTCATCCTCTGTTCGGAGGAGCACTGTCAGCCTTCCTCCCTCACAGCGCCAAAGACACCAGCGAGCTGAGGGAGATCCCGGACAACCAGGAGGTGTTTGCCCACGAACACACCGACCAGAGCCTGATCGTGGAGCTGGTGGAGTACCAGGATCAGGTGGCGGACCAAGACGCTGCCAGGTATCACTTTGAAGACATCGCAGGCAGCAACAAAGCTTTGGAGCCAGGTGCTTTCGAAGTGACCGGTGTCGCGCCTCTGTCCAAATCCGAGCTGTCCCTGTCAGACTGCAGCTCTGCCTGGATGCTGACTGGCACACAGCGTGTATCCAAATTCAACGAGGAAGCGAGGAATACAGTGACCCTTCACCTGGGTCTGTTCCGTCTGCCACAGTTCTCCACAGATGTCCTGATATCCTTCAACGACCCGCAGAGGATCAGCCCCGAGAGCAGCAGTGCTGCCTCAgcggagacacacagagagccatGGACGGTGCAGGACTTCCAGCGCTTGTTGCAGACTCTGACCCTGCACAACCCAGGCCTGTTTGGGTAGAACAACTGCTGCTTTCTCAGGCACGGGACCCTTTGTCTCAGGCACGTTTAAACATAGTAGGACTGTCACTGCCATGACACACATACTCTGTTCTGCCTTTTgatgttgacttttttttctactttgttGTCTCTGACATTTAAAGTTAAATGAAAACCAAACATTTCATGATATGATGATAGTTGTGTCATAATAAATGTGTGTGGATGGAACATC

Function

symbol description
rangrf Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within heart contraction and heart looping. Predicted to be located in nucleus; perinuclear region of cytoplasm; and plasma membrane. Is expressed in blastomere; brain; eye; fin; and heart. Orthologous to human RANGRF (RAN guanine nucleotide release factor).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810312.1 True 951 mRNA 0.53 2 36985858 36986961

Neighbor

gene id symbol gene type direction distance location
LOC120565044 LOC104959247,LOC103354158,LOC101062866 coding upstream 54613 36922493 ~ 36931245 (+)
LOC120566029 LOC104964070,LOC103354160 coding upstream 68715 36889418 ~ 36917143 (+)
plpp6 plpp6,LOC103354162,LOC102785296 coding upstream 103465 36875647 ~ 36882393 (+)
lonp1 lonp1 coding upstream 243862 36725189 ~ 36741996 (+)
rsph4a LOC104961853 coding upstream 264959 36713375 ~ 36720899 (+)
mettl13 mettl13,LOC102788519 coding downstream 6182 36993143 ~ 37005146 (+)
dnm3a dnm3 coding downstream 18480 37005441 ~ 37029588 (+)
suco suco coding downstream 60316 37047277 ~ 37107092 (+)
mysm1 mysm1,LOC106613979 coding downstream 121612 37108573 ~ 37114224 (+)
oma1 oma1 coding downstream 140824 37127785 ~ 37141592 (+)
G100726 myoc non-coding upstream 7696 36968687 ~ 36978162 (+)
G100727 NA non-coding upstream 11809 36935167 ~ 36974049 (+)
G100714 LOC104926011,LOC100703953 non-coding upstream 116864 36863980 ~ 36868994 (+)
G100699 NA non-coding upstream 231033 36754580 ~ 36754825 (+)
G100668 NA non-coding upstream 307028 36678498 ~ 36678830 (+)
G100738 LOC103354147,LOC103137061,LOC106938442 non-coding downstream 52287 37039248 ~ 37043566 (+)
G100747 NA non-coding downstream 59940 37046901 ~ 37047118 (+)
G100749 NA non-coding downstream 113826 37100787 ~ 37102889 (+)
G100847 NA non-coding downstream 212276 37199237 ~ 37199455 (+)
G100846 NA non-coding downstream 479213 37466174 ~ 37475077 (+)
prrc2c NA other upstream 27498 36932655 ~ 36958360 (+)
G100671 NA other upstream 286989 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 374112 36596041 ~ 36611746 (+)
smim24 NA other upstream 451276 36495484 ~ 36534582 (+)
G100568 lmnb2 other upstream 510663 36473538 ~ 36475195 (+)
G100843 NA other downstream 476953 37463914 ~ 37490072 (+)
usp46 usp46 other downstream 1879474 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 2336623 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 2467159 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 2574100 39561061 ~ 39592762 (+)

Expression


Co-expression Network