rsph4a (LOC104961853)


Basic Information

Item Value
gene id rsph4a
gene name LOC104961853
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36713375 ~ 36720899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810322.1
TTGCAGCCTAGCAACCGTTGTATTCCCGTGACCATAGCAACGGTGCAGTTGGCGTGCTAACAGAAGTTGTTGTGGCTGCCGTTAgccggtgtgtttgtgtgtgtgtgtcgaagCTGCTGGAAGACAAGAGAAGACAAAGAAACGGAGGAGAAGAAAGATGGAGTCCGAGGACAGCCGGCGGCTGCAGTCAGCGGCCTCGTTCAAGGCCTTCCTGTTGAAGAGCAGCACGGAGAGCCACCTGAACCTCTATGACCACCTGACCGGGATGCTGCTGAAGGTGATGGATGAGCATCCTCCCAACGTGGTGGATGTGATTGAGGATATGAGCCGCGACGTGAAGCGGGCCATGTTGGAGGAACAGCAGAGCAGCCTGAGAGAGCTCCCAGAGACCAGCGCCGCTGAGCTGCTGGCGGAGCAGCAGCGCTCGCTCTTCAGCCGGCCGGAGGACGCCGACCAGGAGGACGAACTGATGGAGACGCCCCTCCCTAATGTGAGCGAGCTGGGCTTCTACCTGGAGCAGGCCGGGGTGGGGCTGGGTCGCGAGGAGACACAAAGGGTCTTCCTTGCTCTCAAGCAGCTGGTGGAGTCGCAGGCGCTGCTGCGCTGCCGCCTGTGGGGCAAGGTTCTGGGCACAGAAAGCAGCTACATCGTAGCTGAGGCAGAGTacagagagggggaggaagaggaggagcccAGCCTCGACGAAGACGAGACAGAGCCGGAGACGGAAGACACCGAGACGGACCCTCTCCCTCAGTCGACCTATAAACCCCTCCCAGAAGTGCCGAAGGAGGCCCTGGGAACAGGGGCTAACAAGTATGTTTATTACGTGTGCAAAGAGCCGGGTCTTCCCTGGGTGAAGCTCCCGTCAGTCAGTCCTGCACAGATCACCGCTGCTCGCCAAATCCGTAAATTCTTCACGGGGCGGCTGGACAACCCGGTGGCCAGCTACCCGCCCTTCCCCGGGAATGAAGCCAACTACCTGAGAGCACAGATCGCTCGCATCTCCGCCGGAACACAGGTCAGCCCCCAGGGCTTCTTCCAGGCCGGGGAGGAGGAGGGCGATGAGGAAGACACGTCTCCCCGGGACAGCTACGAAGCCAATCCTGACTTTGAGGGCCTTCCGGTTACTGACATGGCGGAGAGTTTGTCCAGCTGGGTGCATCATGTTCAGCACATCCTGCAGCAGGGCCGCTGTACCTGGGTGAACCTGGCTGTGAAGCCAGGAGAAGACCCTAATGAGGAAGGAGAGGcggaggagaaggaagaggagccTGATGAGCCCGAGCCAGAAGTCGGACCCCCTCTGCTCACCCCCCTCTCCCAGGATGCAGAAATGTTTGGCACTCCTCCCTGGACCTCCAAGGTGTCCTCCACTCTCACCTCCCAGCATGCAGTAGCTGTGCTGCGCTCTAACCTCTGGCCGGGCTCATGTGCATATGCTTGTGGAAAGAAGTTTGAGAACATTTATGTTGGCTGGGGTCTGAAGTATGCAGGGGAAGGCTACAGCCCGCTTGTCCCCCCGCTGCCACAGAAAGAATACCCCAGCGGGCCCGAAATCACAGAGGCCCTGGACCCGTCGCTGGAGGAGGAGCAGGTGCTGAAAGAAGCTTTGGAGGAGCAGCAAGCTGCCCAGGAAGAGCTGCAGGACTCGGGAGACGAGGCTGAGGAAGATGACGACTGATAAAACACATATTATATTTCAAGTATTTATTTGTGAGTCAGTGGCCAATAAATCAG

Function

NR:

description
radial spoke head protein 6 homolog A-like

GO: NA

KEGG:

id description
K19756 RSPH4_6; radial spoke head protein 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810322.1 True 1740 mRNA 0.59 7 36713375 36720899

Neighbor

gene id symbol gene type direction distance location
dohh dohh,LOC102789931 coding upstream 1122 36704452 ~ 36712253 (+)
nfic nfic,LOC102792909 coding upstream 118935 36563454 ~ 36594440 (+)
ctns ctns coding upstream 290900 36409868 ~ 36422475 (+)
b4galt6 b4galt6,LOC104925469 coding upstream 339769 36351943 ~ 36373606 (+)
ttr ttr coding upstream 363645 36343295 ~ 36349730 (+)
lonp1 lonp1 coding downstream 4290 36725189 ~ 36741996 (+)
plpp6 plpp6,LOC103354162,LOC102785296 coding downstream 154748 36875647 ~ 36882393 (+)
LOC120566029 LOC104964070,LOC103354160 coding downstream 168519 36889418 ~ 36917143 (+)
LOC120565044 LOC104959247,LOC103354158,LOC101062866 coding downstream 201594 36922493 ~ 36931245 (+)
rangrf rangrf,LOC102787952 coding downstream 264959 36985858 ~ 36986961 (+)
G100668 NA non-coding upstream 34545 36678498 ~ 36678830 (+)
G100667 LOC102192127,LOC101475420,LOC102307792 non-coding upstream 35447 36674449 ~ 36677928 (+)
LOC120565379 NA non-coding upstream 61485 36642906 ~ 36651890 (+)
G100584 NA non-coding upstream 182500 36529802 ~ 36530875 (+)
G100578 rpl36,LOC106560598 non-coding upstream 198569 36511245 ~ 36514806 (+)
G100699 NA non-coding downstream 33681 36754580 ~ 36754825 (+)
G100714 LOC104926011,LOC100703953 non-coding downstream 143081 36863980 ~ 36868994 (+)
G100727 NA non-coding downstream 214268 36935167 ~ 36974049 (+)
G100726 myoc non-coding downstream 247788 36968687 ~ 36978162 (+)
G100738 LOC103354147,LOC103137061,LOC106938442 non-coding downstream 318349 37039248 ~ 37043566 (+)
G100671 NA other upstream 14506 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 101629 36596041 ~ 36611746 (+)
smim24 NA other upstream 178793 36495484 ~ 36534582 (+)
G100568 lmnb2 other upstream 238180 36473538 ~ 36475195 (+)
dsg2.1 NA other upstream 478776 36215464 ~ 36234599 (+)
prrc2c NA other downstream 211756 36932655 ~ 36958360 (+)
G100843 NA other downstream 743015 37463914 ~ 37490072 (+)
usp46 usp46 other downstream 2145536 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 2602685 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 2733221 39454120 ~ 39464450 (+)

Expression


Co-expression Network