chaf1a (chaf1a)


Basic Information

Item Value
gene id chaf1a
gene name chaf1a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28179468 ~ 28192130 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810323.1
GCAAGTGACACACTCCCGCCAATTCCGACTAGGGAGCGCGAGACAGGCAGCGGGGTACACTGGAGTATGTGGGAGATGCGGAAAGAGAATGCGTTATGTTTTATgtgaaataaataagaaatacaTGTCGTTTAAATAACCGCATACTATTTTGGTTCGTTATTGGGGCATTCTCGCAACCTCTACCGTTTTACCGTAGAATATCGCAAACTAGAGGAGCCCCGGCTTAGTGGTTGGGATGTTGGCGGCGGAAAACCACCCATCTGTGGACGGACATCTGGCAGCATCGACTCCCCGCAGAAGAGGCATGGATTGTAAGTCGAGTAAGACTGCTAAGAAGAAACTTATCCAAGCTCGTCTACCGTTCAAGCGCCTGAACCCTGAACCTAAAGAGAACCAGCTGCCTAAACGCCCCTGTGCACATGCCTGCCCTGAATCAGGAGTCTCAGACAGGGAGAATGAGTCCTCTGCACTCCCTGTTCACAATGGACCACCCTTGGTTAATGGTCGCGGTCCCCTTGATGGTTTCCTGAGCCGTAGGCGCCCTGTCCCCTCAGATGAGAACATGGTTATAGATCTGACTGAGGACAACACTTCATCTCCCGTAAAGGGCATTGTGTCACCTACTCCcgcctctccctgtctcccaaCAAAAGACAAGCATCAGGGCAAAGACAAAACTGCATCTTTTGGGAAATCCAACAACGTTGATCACACTCCTAAAACAGACACTTCAGACTGCACAGTAGACAGCGAAGATCAGGATGAGGAAGAAGATGTGGAGGAAGAAGATGGTAATCAGACGGCATCTATTTCACAGCTTGATACAACGCAGGATTCTGAAAGTGAGCCAGAGGAGCAGGATGAGTCAGAGAATGTTTCCAGTTTAGGAAACAGGTCTATGCTGTCAGCTTCATCTGTCAGCTCCACATCTGAAAGCTCACCAGAGATGCCCAAGACTGATGACCCTACACCCACTAGTAcacctacaGAGCCAAAGACCACCCCCAAGATACCATCAGATCAGAAACAGATCAAAAGACGCTCATTGAAGAGTTTACAAGAACAAGAGGAGAGACTTCTGCTGCAACGGGAGAAAGAACGGCAGAAGGAAGAGGCCAAAGCtgcaaaagagaaaaagaaagaagaggccCGCAGACTAAAGGATGAGCGAGAAAGGGAAAAacgagagaagaaagaaaaagatgagCGAGAGAAacgagagaaaaaagagaaggaggagaaggaaaagGCAGACAGGTTAAAAGCAAAAGAGGAGCTAAGGAAATCAAAGCTAGAGGCAAAGCTTGAAGAAAAGCggaaaaaagaagaggagaagcaaattaaggaagaagaaaaacggTTGAAAGAAGAGAAGGATCGCCTCAAAGCTGAGAAAGCTGAAATTACACGTTTTCTGCAGAAACCCAAGATCCAACAGGCTCCAAAGACACTTGCAGCTGCATGTGGGAAGTTTGCACCATTTGAGATAAAAGAACACATGGCTCTGGCACCACTATGTCGCGTTCAGTGTGAGGACTCTGTTCTGGAGGAACTGGACCGTTTTTTGTTGAACCCTGGGGATAACTTGAATGGACTTAAAGACTGGATCAGTCAGGGACCCCGCAGCTCAGGACCCACCAAACCCAGAAAGAGAAACTCACTCAGTGAGTGTATAACAGTAGAAGGGCCACCAGATGGTGTGCCAGATCGTAAACGTTATGGATCCATGAAGCTTCTGCAGTTCCATGCAAACTACCGTCCAGCCTACTGGGGCACCTGGAGTAAGAAGAGTTTACACATTTCACCTCGATGCCCCATCAGACAAGACAAGGATTTGTTAGACTATGAGGTGGACAGTGATGAAGAATGGGAGGAAGAAGAACCAGGAGAATCCCTGTCACATAGTGAAGGGgaagatgaggaggaaggaggtgaagatgatgatgatgatgacggcTTCTTTGTTCCTCATGGCTACCTTTCAGATGATGAGGGGGCTCTAGAAGAAGAGGAGGGTGGTGACCTGGAGAAGCAGAAACTACGTCAAAAAGTGAAAGCAAGGGAGTGGGATGAGCTGATGTCCAccaagaagaagatgaaggtgCTGGACCCAGTGGTGAGGGGCTGCGTCTGGGAGGGAGAAGGACCTGGTTTGCAGCTCTTCCAGCCTTTTGCTCTGTGTCTGGTCGAGCCTTTACCCAAGGCAGACACCAGCCCCAGCCCAGAGGAGCTTTCACGGAAGAGTCAGAGAGAAGCAcaatTACTCGGCCAGCTGCTGCCTCTGCTGCACGGTAACCTCAACAGCAGCAAAGTGATCATCACGGAGTTTCAGGAGTTCTGTCGTCAGCAGACCTCCTCCTCGTCATCTGCTCCTGAACTGTCCAGCCCTCAGAGCCCAGCAGAAAACATCCCTACCAGAATACAGGTGAAGCGCCTTATCAAGAGCAACGCTGTTTATGAGAAGCGATCAACCTACAGACGCTGCTGCTGGTATGTGCACACAGAGGTCCTGTCCCGTTTTGGGCAGGAGGCTCTTCCTGTGCCCTGCCAGTGGACCTACCTCACCACAGGAGCTCGAGAAGAGTCCCGTGAAGAACCCCAGGCAGCCACTGGCTCTCAGGGAAACTCTCCCACTACACCACAGACCTCCTCCACCACGTCTTCATCCTCCAACAAAAGAAAGAGCACAGGCAGCATGTCAATCACCAAGTTCATGAAGAGATGTACTGACCCTGAGCAGATGGAAGCAACAGAGGCAGACGGTTTTCAAGCTGACACTGAGGAAGACGACGAGGAAGACTGTGTCATCATCACCACACAGAATATCCCAACGAGAAAGAACTCCTCCAGCGAGGGAGACTGTCTGATGGAGGTCACCCCCTCTGACACAGCTGCTCTCCCCGTGGCCTGCGCTGCTCCTACACTCGCCACTGCCTGAGGACAGGATAGGCCGTCTCCTCTCACCAAGCTACCCCGTTATCCTCCTAAATATCTCCTTCCTGATTCTGAACTCTACTGTGTCCAAGACAGAATCAAGTCTTCAATCAAGATGGAGCAGCAAAGCAGCACACTCTGGTACAGGCAACTCACAGCTGGTGGCCTCTGCTCAGTATTATGAGTTCCCTCTcaccttaattttttttttttttttttttaaaggagtcGGGAGTCATCTTGCCTGTTAAATGTTGTGCAATGAGGAGTGTCTGACTTGATTATTGAGGGCAGTTTTGTCCATTGTTAATTAACTATCCGTCTGATTGATTTTTGCCTTGAAGTTTCAGTCAGGTGTGTTCAACATGGGTCTCTTTAAAGTCTCTCTGGCGCTGCTTTAACTACAGCAGATTGGGTTGAACAGAGAGAGCGAGCAAGAGCAACATTGAAATGCCCAATGTTCATGAGAAGAAGCATCCAAGACATCAAAAACAGCATTATTTACGGTTCTTGAAATGTTGAATATATGACATTATTGGATATCTTCTAGTCTAAATGTATATAGTTCACCAGAATTAAGAGTAAGGAAATGAGAGGCTGAAGTCCTCTGTACATTTCCCTTTGATTTCAATGGGTGCATTTATTCTGCAATTTCTAACTTTGACAACTCACTGGAGTAGTTGCTAGATCTGTACTTGTACAGTTAGGTCCACTGTCACAAtgttttataaatatgtattttctgtatttttttcaagAATACTTGAACAGGATAAATTCATTAAACATGAATAAAAGTACCGCACTTTTA

Function

symbol description
chaf1a Predicted to be involved in nucleosome assembly. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be part of CAF-1 complex. Predicted to be active in nucleus. Is expressed in several structures, including eye; pectoral fin; pharyngeal arch 3-7 skeleton; somite; and ventricular zone. Human ortholog(s) of this gene implicated in colon cancer; high grade glioma; neuroblastoma; and systemic lupus erythematosus. Orthologous to human CHAF1A (chromatin assembly factor 1 subunit A).

NR:

description
PREDICTED: chromatin assembly factor 1 subunit A

GO: NA

KEGG:

id description
K10750 CHAF1A; chromatin assembly factor 1 subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810323.1 True 3748 mRNA 0.48 16 28179468 28192130

Neighbor

gene id symbol gene type direction distance location
si:ch211-129c21.1 LOC103369187 coding upstream 9813 28146653 ~ 28169655 (+)
LOC120564863 NA coding upstream 52237 28111585 ~ 28127231 (+)
march2 march2 coding upstream 80663 28090705 ~ 28098805 (+)
LOC120564862 LOC104939946,LOC103370860,LOC101073928,LOC105932471,LOC103155165 coding upstream 88884 28085890 ~ 28090584 (+)
gpx4a gpx4 coding upstream 152230 28021945 ~ 28027238 (+)
uap1 uap1 coding downstream 13362 28205492 ~ 28218081 (+)
ddr2a ddr2 coding downstream 26072 28218202 ~ 28253130 (+)
hsd17b7 hsd17b7,LOC100698819 coding downstream 61165 28253295 ~ 28257604 (+)
serbp1a LOC106917776,LOC106949688,LOC103463733,LOC104930792 coding downstream 68925 28261055 ~ 28269639 (+)
LOC120565127 LOC101485093,LOC102207510 coding downstream 154285 28346415 ~ 28353756 (+)
G98770 LOC104966597,LOC101073477 non-coding upstream 297157 27879317 ~ 27882311 (+)
G98766 hapln4 non-coding upstream 320345 27855676 ~ 27859123 (+)
G98763 NA non-coding upstream 330530 27848733 ~ 27848938 (+)
G98723 NA non-coding upstream 592360 27586425 ~ 27587108 (+)
G98685 NA non-coding upstream 680581 27498223 ~ 27498887 (+)
G98972 NA non-coding downstream 120464 28312594 ~ 28318888 (+)
LOC120565132 NA non-coding downstream 257413 28449543 ~ 28460210 (+)
G99007 hook1,LOC102781169,LOC106584290 non-coding downstream 377518 28569648 ~ 28570858 (+)
G99108 NA non-coding downstream 495752 28687882 ~ 28688118 (+)
G99189 NA non-coding downstream 778357 28970487 ~ 28972086 (+)
LOC120564865 NA other upstream 33143 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 95081 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 346613 27659696 ~ 27832855 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 802414 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 1383181 26791729 ~ 26796287 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 580232 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 583245 28775375 ~ 28865487 (+)
G99297 NA other downstream 1471503 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 2235373 30427503 ~ 30429291 (+)
G99545 NA other downstream 2618388 30810518 ~ 30811236 (+)

Expression


Co-expression Network