cyfip1 (cyfip1)


Basic Information

Item Value
gene id cyfip1
gene name cyfip1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40072042 ~ 40125946 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810407.1
TACCTTTCGTCCCTGCCCTAGCGGATCAGGCTAGCACCGCAGCTCGGAGCAGAGTTTCCTGTTGAGTTTCCCTGTTTGAGGGACAGGAACTCCCTGTTCGGCTTCCCTCCCCCGCCCATGATAACACCGACCGAGGAAAGACGAGAGAAGAAAATTAAAGTTGGATAGAGGACTTCCAAACCTGGACTTCTCAGTCGCCAGATGGATCAACATTCCGGTTAAATGGCTCTCTAGTCTGGCTCATAACCGCACAAGTTTTCCTTGCTAACCAACAACTCCGGCATGACGTCCACAGTGACTTTAGAAGATGCCCTGTCCAACGTGGACCTGCTGGAGGAGCTGCCGCTCCCAGACCAGCAGCCATGCATCgagcccctcccctcctccatcATGTTTCAGCCCAACTTCAACACCAACTTTGAGGACCGAAATGCGTTCGTCACCGGCATCGCCAGATACATTGAGCAGGCCACCGTCCACTCCAGCATGAATGTGATGTTGGAGGAGGGGCAGGAGTACGCCATCATGCTCTACACCTGGAGGAGCTGCTCGCGTGCAATACCACAGGTGAAATGCAACGAACAGCCCAACAGAGTGGAGATCTACGAGAAGACCGTGGAGGTCCTGGAACCGGAAGTCACCAAGCTGATGAATTTCATGTACTTCCAGcGCACAGCAATCGACCGTTTCTGCGGAGAAGTCCGTCGTCTCTGTCACATCGAGCGCAGAAAAGACTTTGTCTCCGAGGCATACCTGCTAACCCTCGGAAAGTTCATCAACATGTTCGCTGTGCTGGATGAGCTGAAGAACATGAAATGCAGCGTCAAGAACGACCACTCCGCCTATAAACGTGCCGCCCAGTTCCTGAGAAAAATGTCTGAGCCTTCATCCATCCAGGAGTCTCAGAACCTGTCCATGTTCCTGGCAAACCACAACAAAATCACTCAGTCattgcagcagcagctggaagTGATTAATGGATATGAGGAGCTGCTGGCAGACATTGTCAACCTGTGTGTCGACTATTACGAGGACAAGATGTACCTCACTCCCAATGAGAAACACATGCTGCTCAAAGTAATGGGGTTTGGCTTGTACCTCATGGATGGAAACAGCAGCAACATCTACAAGCTAGATGCCAAGAAGAGAATAAACCTGACCAAGATCGACAAGTTTTTCAAGCAATTGCAGGTGGTCCCTCTGTTTGGCGACATGCAGATTGAGTTGTCCCGGTACATCAAGACCAGTGCTCACTTTGAGGAGAACAAATCTAGGTGGACTTGCACGTCTATATCCAGCAGCCCCCAGTACAACATCTGTGAGCAGATGATTCAGATCCGCGAGGATCATATGCGCTTCATCTCGGAGCTGGCTCGCTATAGCAACAGCGAGGTGGTGACGGGATCAGGGCGTCAGGAAGCCCAAAAGACTGATGCGGAGTACAGGAAGCTGTTTGACTTGGCCCTGCAGGGCATCCAGCTGCTCTCCCAGTGGAGCGCTCACGTCATGGAAGTGTACTCCTGGAAACTAGTTCATCCAACCGACAAGTACTCAAACAAAGAGTGCCCCGACAATGCTGAGGAATATGAGAGAGCCACCAGATACAACTACACCTGCGAGGAGAAGTTTGCTCTTGTGGAGGTGATGGCAATGATAAAGGGACTGCAGGTGCTGATGGGACGCATGGAGAGTGTGTTCAATCACGCCATCCGCCACACAATCTACTCGGCTCTGCAGGACTTTGCCCAGGTCACTCTGCGCGAACCACTGCGACAAGCcatcaagaagaagaagaatgtcaTCCAGAGCGTCCTCCAGGCCATCCGGAAGACAGTGTGTGACTGGGAGACCGGCCGGGAGCCACACAACGACCCTGCCCTCCGGGGAGAAAAAGATCCCAAGGGTGGCTTTGATATCAAGGTTCCTCGCCGAGCAGTGGGGCCCTCCAGTACACAGCTCTACATGGTGAGGACTATGCTGGAGTCTCTCATTGCTGACAAAAGTGGCTCTAAGAAGACTATGCGCAGCAGTCTGGATGGCCCCACCATCCTGGACATGGAGAAGTTCCACCGCGAGTCCTTCTTTTACACCCATCTGCTGAACTTCAGTGAGACCTTGCAGCAGTGTTGTGACCTTTCCCAGCTCTGGTTCAGGGAGTTCTTCCTGGAGCTCACAATGGGCCGCAGGATCCAGTTCCCCATCGAGATGTCCATGCCCTGGATCCTCACCGACCACATCCTGGAGACCAAGGAAGCGTCCATGATGGAGTATGTGCTGTATCCCCTGGATTTGTACAACGACAGTGCACACTACGCCCTGACCAAATTCAAGAAGCAGTTCCTCTATGACGAAATAGAGGCTGAGGTGAACTTGTGCTTTGATCAGTTTGTCTACAAGCTGGCTGATCAGATATTTGCCTACTACAAGATCCTAGCAGGAAGCCTTCTGCTTGACAAACGTTTGAGAGCCGACTGCAAGAACCAAGGGGCCAACATTCCATGGCCGGCCTCCAACCGCTACGAGACACTGCTGAAGCAACGCCACGTCCAGCTTCTAGGCCGCTCCATTGATCTGAACAGGCTCATCACTCAGAGGATTTCAGCTGCCCTTTACAAGTCTCTAGAGCTGGCCATCAATCGCTTCGAGAGTGAGGACCTCACCTCAATAATGGAACTGGAAGGTCTCTTGGACATCAACCGCATGACACACAAGCTTCTCAGTAAGTACTTGACCCTGGACAGCTTGGACGCCATGTTCCGCGAGGCCAACCACAATGTGTCGGCGCCCTACGGCCGGATAACACTGCACGTCTTCTGGGAGCTCAATTATGACTTCCTGCCCAACTATTGCTACAACGGCTCCACCAACAGGTTTGTGCGCACTGTCCTGCCATTCTCTCAGGAGTTTCAGAGGGACAAGCCGCCCAACGCTCAGCCCCAGTACTTGTACGGGTCAAAGACCTTGAATCTGGCGTACACTAGCATATTCAACACCTACAGGAACTTTGTGGGCCCCCCGCACATTAAGGTCATGTGCAGACTGCTGGGTTACCAGGGCATTGCCGTGGTGATGGAGGAACTGCTGAAGGTGGTCAAAAGCCTGCTTCAGGGCACCATAATGCAGTATGTGAAGACCCTGATGGAGGTGATGCCCAAGATCTGCAGACTCCCCCGCCACGAGTACGGTTCCCCAGGTATCCTGGAATTCTTTCACCACCAGCTGAAGGACATTGTTGAGTATGCCGAGCTCAAGACCGTGTGCTTCCAGAACCTGAGGGAAGTGGGCAACGCCATGCTGTTCTGTCTGCTGAGCGAGCAGAGTCTGTCACAGGAAGAAGTTTGTGATTTGCTGCACGCTGCACCTTTTCAGAACATTCTTCCAAGAGTCCATGTCAAAGAGGGGGAACGCCTGGATGCCAAGATGAAGCGCTTGGAGGCTAAATACACAGCCCTGCACCTGGTCCCACTGATAGAGCGCCTGGGAACCCCACAGCAAATTGCCATTGCTCGCGAGGCACCTTTATTGCCCAAAGAGAGGCTGTGTTGTCTATGTTCTGCCAAGGTCATCCGTCACACCATGCAGCGTGTCGACACCTGGCGTAAACGCGCCAGCAATGGCGTGATGCACGTGGACGAGTGTGTGGAGTTCCACCGTCTCTGGAGTGCCATGCAGTTTGTGTACTGCATCCCTGTGGGAGCCCACGAGTTCACAGTGGAGCAGTGCTTCGGAGACGGCCTCCACTGGGCCGGCTGCATGATCATCTCCCTCCTGGGACAGCACCGACGCTTTGACATCCTGGACTTCAGctaccaccttctcaaggtgcaGAAACACGACGGCAAGGATGAGGTCATCAAGAGCGTGCCACTGAAGAAGATGGTCGACAGAATCCGGAAATTCCAGATCCTCAACAATGAGATTTTTGCCATCCTGAATAAGTACCTGAAGTCTGGAGACGGCGAGAACATGCCGGTCGAACATGTCCGATGCTTCCAACCCCCGATCCATCAGTCACTTGCTAGCAGCTGAGGTGGACCAACGTGAAGTTCCAAACACTGTCAGCATTACTAGACTATCCGCAAATATTCCTCATTTACTTTGGGTCTTTAGTAGCGAAGGACCATTAAATGTACGGAAGATGGGccacgtttgtttttttttgtcagaattaattttttttgtattcactTGTGCCTTATCAGAAATTAATTGACATTTTCCCTTTTTGGATGAACTATTTGTTTTATACTTGCAGACAGCTTTAGATCAGGAAAGTGAAATTAGTTTTATCAGATACGTATTTAAGGctttgcagtggtggaatgttaaGGGTGGACAGTAACCTATTTTAAGTTGGGGGGGAGGTGAATATTCTATATTGTAGAACATGCATGCTAAATAttttaaaggaaattaaaaaGGTAACAAAGCTCATAGTCATGTTAAGCATTTATTCACTGTGCCTTGTGTTTCaaatgttttaaacattttaattcaataaatatgtaacaaatC

Function

symbol description
cyfip1 Predicted to enable RNA 7-methylguanosine cap binding activity and actin filament binding activity. Acts upstream of or within with a positive effect on axon extension. Predicted to be located in cytoplasm. Predicted to be part of SCAR complex. Predicted to be active in neuron projection and synapse. Human ortholog(s) of this gene implicated in autism spectrum disorder and schizophrenia. Orthologous to human CYFIP1 (cytoplasmic FMR1 interacting protein 1).

NR:

description
PREDICTED: cytoplasmic FMR1-interacting protein 1 homolog

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05749 CYFIP; cytoplasmic FMR1 interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810407.1 True 4515 mRNA 0.51 32 40072042 40125946

Neighbor

gene id symbol gene type direction distance location
tubgcp5 tubgcp5 coding upstream 2393 40052317 ~ 40069649 (+)
slc9a7 NA coding upstream 35722 40006247 ~ 40036320 (+)
gtpbp6 gtpbp6,LOC103356937,LOC102777366 coding upstream 108506 39959058 ~ 39963536 (+)
nit2 nit2 coding upstream 117788 39945687 ~ 39954254 (+)
tbc1d23 tbc1d23 coding upstream 132635 39923558 ~ 39939407 (+)
herc2 LOC103356925 coding downstream 13487 40139433 ~ 40197238 (+)
oca2 oca2 coding downstream 80080 40206026 ~ 40260251 (+)
gabrb3 gabrb3,LOC106914751,LOC103365202 coding downstream 292047 40417993 ~ 40486609 (+)
ube3a ube3a,LOC103365788 coding downstream 442001 40567947 ~ 40582064 (+)
tmem131 NA coding downstream 477588 40603534 ~ 40637684 (+)
LOC120565265 NA non-coding upstream 26536 40044182 ~ 40045506 (+)
G101666 NA non-coding upstream 53349 39984470 ~ 40018693 (+)
G101674 rp2 non-coding upstream 68203 40000905 ~ 40003839 (+)
G101600 NA non-coding upstream 163532 39905036 ~ 39908510 (+)
G101579 NA non-coding upstream 199869 39871656 ~ 39872173 (+)
G101687 nipa1,LOC102781059 non-coding downstream 3855 40129801 ~ 40133354 (+)
G101688 NA non-coding downstream 9261 40135207 ~ 40135500 (+)
G101796 NA non-coding downstream 134417 40260363 ~ 40260609 (+)
G101823 NA non-coding downstream 360845 40486791 ~ 40487021 (+)
G101831 NA non-coding downstream 381554 40507500 ~ 40507759 (+)
LOC120565298 cdkl5,LOC103356958 other upstream 331765 39693912 ~ 39740277 (+)
reps2 reps2,LOC102792668 other upstream 479280 39561061 ~ 39592762 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other upstream 607592 39454120 ~ 39464450 (+)
prdm5 prdm5 other upstream 710309 39323584 ~ 39361733 (+)
usp46 usp46 other upstream 1191437 38866435 ~ 38880605 (+)
atp10a atp10a other downstream 389147 40515093 ~ 40559895 (+)
G102165 NA other downstream 1326728 41452674 ~ 41453306 (+)

Expression


Co-expression Network