tbc1d23 (tbc1d23)


Basic Information

Item Value
gene id tbc1d23
gene name tbc1d23
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39923558 ~ 39939407 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810496.1
CTCTGATTATATATTAACAATCGCAGTTGCTCTTTAGCGTTGAACGACACGTCGGCCGTGTTGACGGCATTTGACGTGTCCCCGTCACAACAATGGCGGATACCGTAGACGAAGCTCTTCAGGGCAGCTGGGACCAGGATCTAGCTGAGGCTCTGGACTCGGGCAGCTCTGAcatggagatggagagaggcaTCATCCAGGTCCAGGAGCATTCAGCTCAACATAGGGCCAAGATGTGGAAGATCGCTCTAAATGTCTCTGGAAAAGGAGACAGCCTGTCTCCCTGGGACGGCGTCCTCGATTTACCAGAACAGACCCTCATTCACAACCGCAGTCAACAGCTGATTGACCAGCTGAAAGTATCGGAGGAAGAGAGACGTGATATGGTGTCTGACGTTGAGTCAGTCATCACTTTCTACTGCAAGTCCCGCAACATTTCCTTCACCCCAGAGCTGAGCTGGCCGCACCTGCTTAAACCACTGCTGGGGCTTCAGCTTCCCCGCAGCGACCTCTACAACTGCTTCTACGCTGTCATGAACAAATACATCCCCAGGGACTGCGTGCCAAACGGCCGGCCCTTCCACCTGTACAGACTACTGCTGCAGTACCATGAGCCAGAGCTCTGCTCCTTCCTGGACACCAAAAAGATCACACCTGACTCCTACGCCATCAACTGGATGGGAAGTCTGTTTTCCAGCCACTGCCCTCCAGACGTCACCCAGGCTGTGTGGGACTGCTACCTCCGGCAGGCCGACCCCTTCCTCATCTTCTTCCTCATGCTCATCATCCTCGTCAATGCCAAGGAAGCCATCCTTTCAGACGAAGGAGGCAGCAAAGAGGACATCATCAAAATGCTGGAAGCGTCTCCTTCTCACCTGGAATCGGAGGACATTGAAGATTTGTTTTCTCTGGCCCAGTATTACCAGAGCAAGACCCCTCTGTCTCTCAGAAAGATGAACCAGAATCTGTTTGGTAGCAGCCTGGTGGCTCTGAAAGAAGAGGACACTGACCTGAGTCAGGCACTGTGTCTCCCTGTGTCTGTCCCTGAGATCCTGCAGGCCAACCAGCTGCAGCAGGACGGGGTACGTTTCTTTGTGGTGGATTGTCGGCCTGCAGAGCAGTACAATGCTGGGCACCTGTCCACGGCCTTCCACCTGGACTCCGACCTGATGCTCCAGACCCCCTCTGAGTTTGCTCTATCTGTGAAGTCCCTGTTGGAGGCTCAGAAGCAGTCTTTAGAGTCGGGCTCCATTGCCAGCGGAGAGCACCTGTGCTTCATGGGCAGCGgtagggaggaggaggacatgTACATGAACATGGTGTTGGCCCATTTCCTGCAGaaaaacaaagaatatGTCAGCATTGCTAAAGGAGGTTTCATGGCCCTCCAAAAGCATCTGGTAGACATGAATATTGAGGGTCTCGACTCTTCGTACATCCACTGGATCGTCAGCACGTCCGGATCTCACAGCAGCCTCAGCTCTGCCGATGGAGAGTCACTAAGTAGCCCTGGAGACGGCAAAGGCGTCAAGTCTTTGGTCAACAAAATGACATTTGCTCTCAAGTCCAAGTCAGTGAACGTAAAGGAGAAGATGATCAGCTTCATCGAGAACACCTCCACCCCTGTAGACAGAATGTCTTTCAATCTGCCCTGGCCAGAGAAGGTGATTCCAGATCGGCACGTGAGCAGCAGCGACCACGTCGGAAAACCTTACCGGGGGGTGAAGCCTGTTTTCAGTATTGGTGACGAGGAGGAGTATGATACAGATGAGATCGACAGCTCATCCATGTCAGACGACGACAGGAAGGAGATTGTCAACATTCAAACCTGGACAAATAAACCAGATGTAAAGCATCACATTCCATGTAATGAGGTCAAAGAAACTGGCCACATGTTCCCCAGCCACTTGTTGATCACAGCGACTCACATGTACTGCCTCCGGGAGATCGCCTCGAGGAAAGGCTTTGCCTACATCCAATCCAGACAAGCACTGAACTCTGTGGTGAAGATCACATCCAAAAAGAAGCACCCAGAACTGATTACATTCAAGTTTGGCAGCAACAACTCAGCTGGAGTGGAGATATCAGCAGTCGAAAGATATTTGATACCCAACGCAGGCGATGCCACCAAAGTCATTAAGCAGCAGATCATGAAAGTCCTAGATGCTCTGGAGAGCTCGTAAAGGGAGACGGCGGGGTCGTGACGGCCAGCTGTAACACAAACTGTAACCAGAGTCTCTGTCTGCCGAGAGTGAAACCTTGTCCCGCTCTCCCTCGGGTGTCCTCCCTGCTGGACACACCAGTGCAGTGTTGACTGTGAagccctgtgtgtctgtgtttgggaCATGGCGGGCACACTGCTGGCTGCGGGGCCTGTGGCACAGGCTGTGAGTGTTGAAATACTTAGGTGCTCCACGGTCGTCCAACCATTCTCTTTCActaagttaaaaaaacaatattggttgtactgtatgtttttcttAATCATTGATAAAACATGGGATCTACAATTCTACTTTGGCAAACTTCCCTCTGGCCTTAAGGTAGCGTACTGACCGAGCTCTTTAATCACTACATGACCGACCTTTTCCTTTCCACTTAAAGCATCTCAGTTCTGACCCAGCTGTTTTGTAGGGAACAGTATTGCAGCTCAGTCATGTCTTTTAGTTTCCCTCTCAGACCCCCTCAAA
>XM_039810497.1
CTCTGATTATATATTAACAATCGCAGTTGCTCTTTAGCGTTGAACGACACGTCGGCCGTGTTGACGGCATTTGACGTGTCCCCGTCACAACAATGGCGGATACCGTAGACGAAGCTCTTCAGGGCAGCTGGGACCAGGATCTAGCTGAGGCTCTGGACTCGGGCAGCTCTGAcatggagatggagagaggcaTCATCCAGGTCCAGGAGCATTCAGCTCAACATAGGGCCAAGATGTGGAAGATCGCTCTAAATGTCTCTGGAAAAGGAGACAGCCTGTCTCCCTGGGACGGCGTCCTCGATTTACCAGAACAGACCCTCATTCACAACCGCAGTCAACAGCTGATTGACCAGCTGAAAGTATCGGAGGAAGAGAGACGTGATATGGTGTCTGACGTTGAGTCAGTCATCACTTTCTACTGCAAGTCCCGCAACATTTCCTTCACCCCAGAGCTGAGCTGGCCGCACCTGCTTAAACCACTGCTGGGGCTTCAGCTTCCCCGCAGCGACCTCTACAACTGCTTCTACGCTGTCATGAACAAATACATCCCCAGGGACTGCGTGCCAAACGGCCGGCCCTTCCACCTGTACAGACTACTGCTGCAGTACCATGAGCCAGAGCTCTGCTCCTTCCTGGACACCAAAAAGATCACACCTGACTCCTACGCCATCAACTGGATGGGAAGTCTGTTTTCCAGCCACTGCCCTCCAGACGTCACCCAGGCTGTGTGGGACTGCTACCTCCGGCAGGCCGACCCCTTCCTCATCTTCTTCCTCATGCTCATCATCCTCGTCAATGCCAAGGAAGCCATCCTTTCAGACGAAGGAGGCAGCAAAGAGGACATCATCAAAATGCTGGAAGCGTCTCCTTCTCACCTGGAATCGGAGGACATTGAAGATTTGTTTTCTCTGGCCCAGTATTACCAGAGCAAGACCCCTCTGTCTCTCAGAAAGATGAACCAGAATCTGTTTGGTAGCAGCCTGGTGGCTCTGAAAGAAGAGGACACTGACCTGAGTCAGGCACTGTGTCTCCCTGTGTCTGTCCCTGAGATCCTGCAGGCCAACCAGCTGCAGCAGGACGGGGTACGTTTCTTTGTGGTGGATTGTCGGCCTGCAGAGCAGTACAATGCTGGGCACCTGTCCACGGCCTTCCACCTGGACTCCGACCTGATGCTCCAGACCCCCTCTGAGTTTGCTCTATCTGTGAAGTCCCTGTTGGAGGCTCAGAAGCAGTCTTTAGAGTCGGGCTCCATTGCCAGCGGAGAGCACCTGTGCTTCATGGGCAGCGgtagggaggaggaggacatgTACATGAACATGGTGTTGGCCCATTTCCTGCAGaaaaacaaagaatatGTCAGCATTGCTAAAGGAGGTTTCATGGCCCTCCAAAAGCATCTGGTAGACATGAATATTGAGGGTCTCGACTCTTCGTACATCCACTGGATCGTCAGCACGTCCGGATCTCACAGCAGCCTCAGCTCTGCCGATGGAGAGTCACTAAGTAGCCCTGGAGACGGCAAAGGCGTCAAGTCTTTGGTCAACAAAATGACATTTGCTCTCAAGTCCAAGTCAGTGAACGTAAAGGAGAAGATGATCAGCTTCATCGAGAACACCTCCACCCCTGTAGACAGGCACGTGAGCAGCAGCGACCACGTCGGAAAACCTTACCGGGGGGTGAAGCCTGTTTTCAGTATTGGTGACGAGGAGGAGTATGATACAGATGAGATCGACAGCTCATCCATGTCAGACGACGACAGGAAGGAGATTGTCAACATTCAAACCTGGACAAATAAACCAGATGTAAAGCATCACATTCCATGTAATGAGGTCAAAGAAACTGGCCACATGTTCCCCAGCCACTTGTTGATCACAGCGACTCACATGTACTGCCTCCGGGAGATCGCCTCGAGGAAAGGCTTTGCCTACATCCAATCCAGACAAGCACTGAACTCTGTGGTGAAGATCACATCCAAAAAGAAGCACCCAGAACTGATTACATTCAAGTTTGGCAGCAACAACTCAGCTGGAGTGGAGATATCAGCAGTCGAAAGATATTTGATACCCAACGCAGGCGATGCCACCAAAGTCATTAAGCAGCAGATCATGAAAGTCCTAGATGCTCTGGAGAGCTCGTAAAGGGAGACGGCGGGGTCGTGACGGCCAGCTGTAACACAAACTGTAACCAGAGTCTCTGTCTGCCGAGAGTGAAACCTTGTCCCGCTCTCCCTCGGGTGTCCTCCCTGCTGGACACACCAGTGCAGTGTTGACTGTGAagccctgtgtgtctgtgtttgggaCATGGCGGGCACACTGCTGGCTGCGGGGCCTGTGGCACAGGCTGTGAGTGTTGAAATACTTAGGTGCTCCACGGTCGTCCAACCATTCTCTTTCActaagttaaaaaaacaatattggttgtactgtatgtttttcttAATCATTGATAAAACATGGGATCTACAATTCTACTTTGGCAAACTTCCCTCTGGCCTTAAGGTAGCGTACTGACCGAGCTCTTTAATCACTACATGACCGACCTTTTCCTTTCCACTTAAAGCATCTCAGTTCTGACCCAGCTGTTTTGTAGGGAACAGTATTGCAGCTCAGTCATGTCTTTTAGTTTCCCTCTCAGACCCCCTCAAA

Function

symbol description
tbc1d23 Involved in embryonic brain development. Acts upstream of or within brain development. Predicted to be located in cytoplasmic vesicle. Predicted to be active in trans-Golgi network. Is expressed in head. Used to study pontocerebellar hypoplasia. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TBC1D23 (TBC1 domain family member 23).

NR:

description
PREDICTED: TBC1 domain family member 23 isoform X2

GO:      GO:0005097,GO:0032851

KEGG:

id description
K22555 TBC1D23; TBC1 domain family member 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810496.1 True 2690 mRNA 0.51 19 39923558 39939407
XM_039810497.1 False 2645 mRNA 0.51 18 39923558 39939407

Neighbor

gene id symbol gene type direction distance location
tomm70a tomm70 coding upstream 2768 39911630 ~ 39920790 (+)
wwc3 wwc3 coding upstream 60297 39828956 ~ 39863261 (+)
cldn34a NA coding upstream 100191 39816828 ~ 39823367 (+)
shroom2a shroom2 coding upstream 106842 39775793 ~ 39816716 (+)
LOC120565276 ap1s2,zgc:162858,LOC106942561,LOC107095773,LOC106921341,LOC103356955,LOC102795551,LOC101477195,LOC103463884,LOC102192022,LOC102311043 coding upstream 157379 39747748 ~ 39766179 (+)
nit2 nit2 coding downstream 6280 39945687 ~ 39954254 (+)
gtpbp6 gtpbp6,LOC103356937,LOC102777366 coding downstream 19651 39959058 ~ 39963536 (+)
slc9a7 NA coding downstream 66840 40006247 ~ 40036320 (+)
tubgcp5 tubgcp5 coding downstream 112910 40052317 ~ 40069649 (+)
cyfip1 cyfip1 coding downstream 132635 40072042 ~ 40125946 (+)
G101600 NA non-coding upstream 15048 39905036 ~ 39908510 (+)
G101579 NA non-coding upstream 51385 39871656 ~ 39872173 (+)
G101519 LOC103356959,LOC104928288 non-coding upstream 243032 39680078 ~ 39680526 (+)
G101484 NA non-coding upstream 485493 39437654 ~ 39438065 (+)
G101464 NA non-coding upstream 644605 39278652 ~ 39278953 (+)
G101666 NA non-coding downstream 45063 39984470 ~ 40018693 (+)
G101674 rp2 non-coding downstream 61498 40000905 ~ 40003839 (+)
LOC120565265 NA non-coding downstream 104775 40044182 ~ 40045506 (+)
G101687 nipa1,LOC102781059 non-coding downstream 190394 40129801 ~ 40133354 (+)
G101688 NA non-coding downstream 195800 40135207 ~ 40135500 (+)
LOC120565298 cdkl5,LOC103356958 other upstream 183281 39693912 ~ 39740277 (+)
reps2 reps2,LOC102792668 other upstream 330796 39561061 ~ 39592762 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other upstream 459108 39454120 ~ 39464450 (+)
prdm5 prdm5 other upstream 561825 39323584 ~ 39361733 (+)
usp46 usp46 other upstream 1042953 38866435 ~ 38880605 (+)
atp10a atp10a other downstream 575686 40515093 ~ 40559895 (+)
G102165 NA other downstream 1513267 41452674 ~ 41453306 (+)

Expression


Co-expression Network