foxe3 (foxe3,LOC104952243,LOC102794361)


Basic Information

Item Value
gene id foxe3
gene name foxe3,LOC104952243,LOC102794361
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24278396 ~ 24281064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810519.1
CACCATGGCATGCTTGTGTTTAAAGGGTGTTGTGTGCATGAACTGTGTTTTTACTTAAAGATCCATAAGATAACACTTCTTCTCTCTGGCCGGGGGACTGTTTGATTATCACTctcaaaaattgaaaatgaaataagGGGATATTTACTTTTCTTCCCCAAAAGCTTTGATAGCTCAATTGCTTGTTTTCAGTGgcttgttattatttttcaattgGTGGATTGGCTGTTGGGTTTGGAGTAGCACAGAGCAGCTCTGTGAGTGTTGTTTCTGCCCTGGATATACACAGAGCTGTCAGTGAAAGCAGCtagagaacagtggacacagAGAGATAGAAGGGGTCATCAGTAAATCTCGGTTAGTGCCTCAAACACTAATAATGTGTGGTGTCTGACATAATCACTAAGTTATACGATCTAGGCTACCTAACTGGGCCATAACTTACCATGGACATTGAGCTGGCAAAAGGCCTTTTCaaattaaagtatttttttagtAGCTTAAATAAATCCTAAAATCCTTTTTTGAAAACTGCCACCTAGAACACTAATTATCCTAACAGCGTAACATGAAAACATACCTCAAACTCCATGAGCTCTTACATCAGAGTCAGAGGAACATTAAACTGTTCTTTTGGGTTTTGTCCTCCTGCCTCCATCGTCACAGGCGAGCCAGTGGCGTCATTCCTGCCTCGCTTTATAAAACTGTCAACGCCTTCCTCTCACCTGGACTGACACACACCACCCCAAACACCAGGACAGCAGGACAGGGGCTATTTTTGTCCAGAGCAGGAGATCAGTAGGCTAAACTACGCACCTAACTTGTTGCTTTCACGggcattcccccccccccccaagctgATCATTTCAACAAAAAGAAGACCATCACgtagttttttttatgaatcTGGCAAATTATTCTTACTTCTCTGGCATGTGCAACATGACCGCTGAGACGCAGCACTCGCCCGCCGAGGCAAGTCCTATACAAGTCATGTCTCCGAATGTGAGCCTGGACTCGCCGCTGGCACCGCCGCCTCTGATGCTGCAGGCCCGGTCAAAGGACAATGTTTTGATCAAGTCCGAGCCCCGGGGAACCAGTCCAAACACGGAGGATGGAGCCGCTCTGGGGCAGACTGAGGAGCACCTGCCCACCGGGAGCCGCCGGAGGAAGAGGCCCGTCCAGAGGGGGAAACCTCCCTACAGCTACATCGCTCTCATCGCCATGGCCATTGCCAACTCTCCCGAGAGAAAGCTCACCCTGGGGGGCATTTATAAGTTCATCATGGAGCGTTTTCCTTTCTACAGGGAGAACTCGAAGAAGTGGCAAAACTCCATCCGCCACAACCTCACCCTCAACGACTGTTTTGTCAAGATCCCCCGGGAGCCCGGCAGACCGGGTAAAGGCAACTACTGGACTTTAGACCCCGCCGCTGAGGACATGTTTGACAACGGGAGCTTtctgaggaggaggaaaagattCAAGCGCACAGATGTGAGCACCTACCCCGGCTACATGCAAAGCTCCAGCGCGTTCACCCCAACCCCAATGGGCAGGCCCTCTTACCCGAACACCCTGTACGCTGGGATAGGGTCCGGGTATGGCTCCCAGCTGACTGCCACATCCCCGCATCCGGCCATGCTGCATCACTACCAGACCTCCGCCGGGGCCGGCCAAGGACAGCCGCGCATGTTCAGCATCGACAATATCATCAACCAGCAGACAGGTCAGGGGGTAGACCTAAACTCCCAGGCGCTTGGTTTGGGTCTGGGCCTGGGAGGAGGTGACCTGGGCTCCATGACCTCCAACTGCGCGGTCACCGGCACCGACCCGTCTGCGTGCTTCCAGACCCAGACTGGCAACCCCTCGGCGAACATGCTGAGCAGAAACAGCGGAAACCTCTCATCCAACCTGGCCGCCGGGTACCCgtactcctcctcctcggcctcTCCTCCAAACCTGCCCACCATGACCCAGTCCGGTTTCTCTCCGGGGAACTCTCAAGTGTACTGCTCCGGCAACCGGCTGTCCCTGCCGGCCTTGCGCCCGGGCTCCTGCGCCGAGCACACGGAGCAGCTGCTGGGCCTCTCCAGTCCAATGAACTCCTACAACAACACCTACATGAGACAAGCCAACTTTGCGTCAGGATTAGAGCGGTATATGTGAGGCATtatttgcaaaaaatatatatatatcctaatTAATTATAGGCCACTAAATAGTCCCATATTAGAGGAATACGCCCTCAATAAGAGATGAATATAGGTCTGACATAAAAATACTATTATTGGGATATTAGAGCCGAATATAAGGCCTCTATTTCAAAATGTCGTAAGTGGCCTAATTATGTCACTTATTAAACGATGAATTTATAAGTTCCTGTAAGGATTTCGGTGATTTATATTTGCCAGGATCAGACAAAGATTAGCCACACACAAAATGACCGAGCCTCATGATAAAACATTCCTATTTTAAAAGCCATTTAGATCCGTTTGACACATTCCATGactgtttaatgtattttattgtgccattcatatttgtgttttagAGTTAGCTTTTACACGTGTTTGTTAGTATATTTGAATTCAAGTCTGCAGTTTttcatgtaaatagtttgttgATGTATAAAAACTTTATTAAAAGAGTGTTATCATTGCTGACGACAG

Function

symbol description
foxe3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within aorta development; lens morphogenesis in camera-type eye; and negative regulation of lens fiber cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including adenohypophyseal placode; hatching gland; lens; lens placode; and optic primordium. Human ortholog(s) of this gene implicated in anterior segment dysgenesis; anterior segment dysgenesis 2; cataract 34 multiple types; and thoracic aortic aneurysm. Orthologous to human FOXE3 (forkhead box E3).

NR:

description
forkhead box protein E4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09398 FOXE; forkhead box protein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810519.1 True 2669 mRNA 0.49 1 24278396 24281064

Neighbor

gene id symbol gene type direction distance location
ankrd24 ankrd24,LOC106918341,LOC106947862,LOC102780339,LOC103142601 coding upstream 95368 24168358 ~ 24183028 (+)
s1pr3a LOC104942240,LOC103398206 coding upstream 140882 24133664 ~ 24137514 (+)
tle2b LOC103463550,LOC105936873,LOC103142606,LOC108230720,LOC101484064,LOC102310211,LOC101064354 coding upstream 280012 23913948 ~ 23998384 (+)
tle5 aes,LOC108430095 coding upstream 398230 23836670 ~ 23880166 (+)
LOC120565386 LOC104923650,LOC102308979,LOC100710383,LOC103369973,LOC102790487 coding upstream 442742 23790086 ~ 23835654 (+)
foxd2 LOC104918470,LOC103372816,LOC100707784 coding downstream 6040 24287104 ~ 24288689 (+)
scyl3 scyl3 coding downstream 200639 24481703 ~ 24488751 (+)
sele NA coding downstream 234370 24515434 ~ 24519540 (+)
LOC120565835 NA coding downstream 239570 24520634 ~ 24524358 (+)
LOC120566076 NA coding downstream 243409 24524473 ~ 24531588 (+)
G97807 sac3d1 non-coding upstream 22315 24254470 ~ 24256081 (+)
G97789 NA non-coding upstream 64537 24211860 ~ 24213859 (+)
G97788 odf3l2,LOC104949085 non-coding upstream 69106 24208229 ~ 24209290 (+)
G97728 NA non-coding upstream 187077 24090543 ~ 24091319 (+)
G97702 NA non-coding upstream 278174 23998401 ~ 24000222 (+)
LOC120565067 NA non-coding downstream 28545 24309609 ~ 24365175 (+)
G97896 LOC104918463,LOC104952282 non-coding downstream 230907 24511971 ~ 24513033 (+)
G97938 NA non-coding downstream 357402 24638466 ~ 24642085 (+)
G98014 LOC106904844,LOC106963772,LOC102314236,LOC103463589,LOC106513892,LOC102207185,LOC100706092 non-coding downstream 503732 24784796 ~ 24785342 (+)
G98015 NA non-coding downstream 506267 24787331 ~ 24787540 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other upstream 70255 24204341 ~ 24208141 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other upstream 627883 23631119 ~ 23650513 (+)
G97596 lpl,LOC108280930,LOC105906969 other upstream 800578 23474782 ~ 23477818 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other upstream 898021 23378731 ~ 23380375 (+)
pole4 NA other upstream 954912 23321464 ~ 23323484 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 467953 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 500854 24781918 ~ 24783881 (+)
elovl1b LOC106963699,LOC101078639 other downstream 571223 24852287 ~ 24873916 (+)
G98194 NA other downstream 1251761 25532825 ~ 25547089 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other downstream 1449161 25730225 ~ 25738789 (+)

Expression


Co-expression Network