Item | Value |
---|---|
gene id | nfic |
gene name | nfic,LOC102792909 |
gene type | coding |
species | eurasian perch (Perca fluviatilis) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_053120.1 |
NCBI id | CM020917.1 |
chromosome length | 41568296 |
location | 36563454 ~ 36594440 (+) |
genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
symbol | description |
---|---|
nfic | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human NFIC (nuclear factor I C). |
description |
---|
PREDICTED: nuclear factor 1 C-type isoform X2 |
id | name | namespace |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0006260 | DNA replication | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0003677 | DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
id | description |
---|---|
K09170 | NFIC; nuclear factor I/C |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_039810546.1 | False | 9391 | mRNA | 0.47 | 12 | 36563454 | 36594440 |
XM_039810548.1 | False | 9480 | mRNA | 0.47 | 13 | 36563454 | 36594440 |
XM_039810549.1 | False | 9529 | mRNA | 0.47 | 13 | 36563623 | 36594440 |
XM_039810550.1 | True | 9618 | mRNA | 0.47 | 14 | 36563623 | 36594440 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
ctns | ctns | coding | upstream | 140979 | 36409868 ~ 36422475 (+) |
b4galt6 | b4galt6,LOC104925469 | coding | upstream | 189848 | 36351943 ~ 36373606 (+) |
ttr | ttr | coding | upstream | 213724 | 36343295 ~ 36349730 (+) |
LOC120565107 | NA | coding | upstream | 236076 | 36298542 ~ 36327378 (+) |
LOC120565108 | NA | coding | upstream | 278648 | 36237852 ~ 36284806 (+) |
dohh | dohh,LOC102789931 | coding | downstream | 110012 | 36704452 ~ 36712253 (+) |
rsph4a | LOC104961853 | coding | downstream | 118935 | 36713375 ~ 36720899 (+) |
lonp1 | lonp1 | coding | downstream | 130749 | 36725189 ~ 36741996 (+) |
plpp6 | plpp6,LOC103354162,LOC102785296 | coding | downstream | 281207 | 36875647 ~ 36882393 (+) |
LOC120566029 | LOC104964070,LOC103354160 | coding | downstream | 294978 | 36889418 ~ 36917143 (+) |
G100566 | NA | non-coding | upstream | 21280 | 36469528 ~ 36542174 (+) |
G100584 | NA | non-coding | upstream | 32579 | 36529802 ~ 36530875 (+) |
G100578 | rpl36,LOC106560598 | non-coding | upstream | 48648 | 36511245 ~ 36514806 (+) |
G100537 | NA | non-coding | upstream | 77762 | 36483286 ~ 36485692 (+) |
G100557 | NA | non-coding | upstream | 101984 | 36459521 ~ 36461470 (+) |
LOC120565379 | NA | non-coding | downstream | 48466 | 36642906 ~ 36651890 (+) |
G100667 | LOC102192127,LOC101475420,LOC102307792 | non-coding | downstream | 80009 | 36674449 ~ 36677928 (+) |
G100668 | NA | non-coding | downstream | 84058 | 36678498 ~ 36678830 (+) |
G100699 | NA | non-coding | downstream | 160140 | 36754580 ~ 36754825 (+) |
G100714 | LOC104926011,LOC100703953 | non-coding | downstream | 269540 | 36863980 ~ 36868994 (+) |
smim24 | NA | other | upstream | 28872 | 36495484 ~ 36534582 (+) |
G100568 | lmnb2 | other | upstream | 88259 | 36473538 ~ 36475195 (+) |
dsg2.1 | NA | other | upstream | 328855 | 36215464 ~ 36234599 (+) |
G100174 | calr3 | other | upstream | 2055902 | 34504643 ~ 34507552 (+) |
G100087 | NA | other | upstream | 2685123 | 33875209 ~ 33878331 (+) |
sass6 | sass6,LOC102776185 | other | downstream | 1601 | 36596041 ~ 36611746 (+) |
G100671 | NA | other | downstream | 100997 | 36695437 ~ 36698869 (+) |
prrc2c | NA | other | downstream | 338215 | 36932655 ~ 36958360 (+) |
G100843 | NA | other | downstream | 869474 | 37463914 ~ 37490072 (+) |
usp46 | usp46 | other | downstream | 2271995 | 38866435 ~ 38880605 (+) |