si:ch73-61d6.3 (LOC107392864,LOC108238350,LOC103359431)


Basic Information

Item Value
gene id si:ch73-61d6.3
gene name LOC107392864,LOC108238350,LOC103359431
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14480454 ~ 14498574 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810587.1
GGTGGGCCTCATCACCGCGGACAGGCGGGACAAAGCACTTGTTCAGAGGCTGTTTGTCGAAGCAAACCGTTGTCTCTATCTTCGCCTCGGACTGCAGCTTAAAGCGGAGTCGCTACTTTTAAAGATAGCCTCGAATGAAGAGGttcactttaatattaattcatCTCGGAGACAGGTTAGTTTTCTAACGGACACATTATTTAGCTCCTAACTTTCAGAAGGGGAGTTTTGACAGGAAACAGGGATTGGCTGGAAGTTCCTATTCCCCTTTAGCGTTCCACAGTACGGGATATCTTTGAGCGATGTTCGACAAGCAGCACTATGAGAGTCCACCTGTTTACTCTCCTCCTTTCCGCTCGCCATCCAACAATGGCTTTGGCCCTCCAGGCAGCTTCAATGCTCCTCAGAGCGGTTACAACGCATACCCACCTCCGCCGGGATCTTACTACATTGAGGACAAACCTCAGCACTTCTACAAATGGCTGTCACCTCCAGGGATCATCAAGGCCATGATGGCTACAGTGATCGTGTTGTGTGTGGCGATTTTTGCCTGCGTGGCCTCCACTCTCATGTGGGACATGCAGTATGGAATGGGAATGGGAATGGGCTACGGCAGTGGATACGGCGGCGGCAGCTACGGCTCAGGATACGGTGGTTATGGAGGTTATGGAGGAGGCTACGGAGGAGGCTATGGAAATGGCTATGGCTCCTACCTCTCTCCTTACTCAGCCAAAACCACCATGATTGCCATGGCAGCCATTAACTTCATAGGGGCACTGGCCTTCTTCATCACAAGCTTCTCTAAATCCAACACTGTCCGTGGTAGAAAGTTCTTCCTGGCCGTCATGATAGCCAGCATCATCATGGCAATCCTGCAGGGCATCATAAACATTGTCTACATTGTCGGGGTGAACCCCATGTCCCAGGGCACCTCCAGTATGATGTACAATCCGATGCTTATGATGTGCCAGAACCTCTACCAGACCAGCTACTCTCAGATGGGAGGAGTGGGAGGCTTCCCCATCTACAACCAGTACCTCTACCATTACTGCTTTGTGGACCCACAGGAGGGAGTTGCCATGGTGTGTGGATTCGTGGTTGTCATCGCCTTCGGTGTTGCGGCTttctttgcacacaaaacaagaGGGAAGATCTGGCGATACGGGAAACCAAACATCTACTGGGAAGAGCCTCTCGTTGGTGGGAAGGCCTCAGAGGGCAGGGACGTAGAGGAATGGGTGAACAATGTAGAGGAAAGCCGCAGTGTTCAAGACGCCCCTACCCTGCTGGTATCAGAGAAGGGAGCCGGGCTGCTCAACGCCTCAGCGAACAGTGTCATCTCCTACCCCCCAGCTAAGGTGGACAGCAGCTCCTATAACGAGGACAACTATGACAACAATGAGTACTCAGATAGAACCACCAGCAGACCATCAGAAGCCTTCTCCCACGGTGGACGAACCAGCTCGAGCCCTTCAGAGGGGACCGGCGGGGGCCGCAAACCCTCTGCCAACAGGGGCAAGAGACGCAGACGTAACCCAGAGCTGGATGAGTCTCAGTATGAGACAGAGTACACCACAGGAGGAGAAACAGGCAATGAACTCGATGGAGAAGAGTGGGAGAAtatGTACCCAGAAATAACATCTGATGCTCAGCGTCATGACTATAAGAGAGAGTTTGATGCCGACCTTAAGGAATACAAGCGCCTGTGTGCTGAGATGGACGACATTAATGACCAGTTAAACAAACTCAGCCGTCAGCTGGACACACTGGATGAAAACTCTGCCAAATATCAGGCTGTAGCAGTGGAATATAATCAGTTGAAGGATCTGAAGCAGACATCGGACTACCAATCTAAGAAGAAACAGTGTCGCAGCCTGAGACACAAACTGTTCCACATCAAGGGCATGGTGAAGGACTACGACAAGAACCACTGATGAATCCGCTGAGTCCTGACGCTCAACTCTGTGGTCCACACAGcaaacactcacagacacacaggccaAGATACACTCCTAAACACTGCAAAGACTCTGTGACATGCCGAGACCAAa
>XM_039810588.1
TCACAAATGTAATTCCTATTGCCCCTTTGGGAAACCACGGACCATGGGAGATTTCAAGTGACAGTTCAGCTCAAGTTGCACGGTGTtcgttttcccaagatggcgcccgacTGTATACGTGAAAGTACGGGATATCTTTGAGCGATGTTCGACAAGCAGCACTATGAGAGTCCACCTGTTTACTCTCCTCCTTTCCGCTCGCCATCCAACAATGGCTTTGGCCCTCCAGGCAGCTTCAATGCTCCTCAGAGCGGTTACAACGCATACCCACCTCCGCCGGGATCTTACTACATTGAGGACAAACCTCAGCACTTCTACAAATGGCTGTCACCTCCAGGGATCATCAAGGCCATGATGGCTACAGTGATCGTGTTGTGTGTGGCGATTTTTGCCTGCGTGGCCTCCACTCTCATGTGGGACATGCAGTATGGAATGGGAATGGGAATGGGCTACGGCAGTGGATACGGCGGCGGCAGCTACGGCTCAGGATACGGTGGTTATGGAGGTTATGGAGGAGGCTACGGAGGAGGCTATGGAAATGGCTATGGCTCCTACCTCTCTCCTTACTCAGCCAAAACCACCATGATTGCCATGGCAGCCATTAACTTCATAGGGGCACTGGCCTTCTTCATCACAAGCTTCTCTAAATCCAACACTGTCCGTGGTAGAAAGTTCTTCCTGGCCGTCATGATAGCCAGCATCATCATGGCAATCCTGCAGGGCATCATAAACATTGTCTACATTGTCGGGGTGAACCCCATGTCCCAGGGCACCTCCAGTATGATGTACAATCCGATGCTTATGATGTGCCAGAACCTCTACCAGACCAGCTACTCTCAGATGGGAGGAGTGGGAGGCTTCCCCATCTACAACCAGTACCTCTACCATTACTGCTTTGTGGACCCACAGGAGGGAGTTGCCATGGTGTGTGGATTCGTGGTTGTCATCGCCTTCGGTGTTGCGGCTttctttgcacacaaaacaagaGGGAAGATCTGGCGATACGGGAAACCAAACATCTACTGGGAAGAGCCTCTCGTTGGTGGGAAGGCCTCAGAGGGCAGGGACGTAGAGGAATGGGTGAACAATGTAGAGGAAAGCCGCAGTGTTCAAGACGCCCCTACCCTGCTGGTATCAGAGAAGGGAGCCGGGCTGCTCAACGCCTCAGCGAACAGTGTCATCTCCTACCCCCCAGCTAAGGTGGACAGCAGCTCCTATAACGAGGACAACTATGACAACAATGAGTACTCAGATAGAACCACCAGCAGACCATCAGAAGCCTTCTCCCACGGTGGACGAACCAGCTCGAGCCCTTCAGAGGGGACCGGCGGGGGCCGCAAACCCTCTGCCAACAGGGGCAAGAGACGCAGACGTAACCCAGAGCTGGATGAGTCTCAGTATGAGACAGAGTACACCACAGGAGGAGAAACAGGCAATGAACTCGATGGAGAAGAGTGGGAGAAtatGTACCCAGAAATAACATCTGATGCTCAGCGTCATGACTATAAGAGAGAGTTTGATGCCGACCTTAAGGAATACAAGCGCCTGTGTGCTGAGATGGACGACATTAATGACCAGTTAAACAAACTCAGCCGTCAGCTGGACACACTGGATGAAAACTCTGCCAAATATCAGGCTGTAGCAGTGGAATATAATCAGTTGAAGGATCTGAAGCAGACATCGGACTACCAATCTAAGAAGAAACAGTGTCGCAGCCTGAGACACAAACTGTTCCACATCAAGGGCATGGTGAAGGACTACGACAAGAACCACTGATGAATCCGCTGAGTCCTGACGCTCAACTCTGTGGTCCACACAGcaaacactcacagacacacaggccaAGATACACTCCTAAACACTGCAAAGACTCTGTGACATGCCGAGACCAAa

Function

NR:

description
PREDICTED: occludin-like

GO:

id name namespace
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810587.1 True 2051 mRNA 0.51 9 14480454 14498574
XM_039810588.1 False 1893 mRNA 0.52 9 14482779 14498574

Neighbor

gene id symbol gene type direction distance location
mfsd12b mfsd12 coding upstream 1387 14469044 ~ 14479067 (+)
csnk1g2b LOC106925954,LOC106953035,LOC103468226,LOC104921814,LOC103394965 coding upstream 13166 14424219 ~ 14467288 (+)
zgc:101100 NA coding upstream 57352 14418540 ~ 14423102 (+)
rexo1 rexo1 coding upstream 71032 14391912 ~ 14409422 (+)
mknk2b mknk2 coding upstream 91957 14374703 ~ 14388497 (+)
babam1 babam1 coding downstream 39002 14537576 ~ 14544528 (+)
plvapb NA coding downstream 50015 14548589 ~ 14554920 (+)
ano8b ano8,LOC103359425,LOC104965807 coding downstream 80453 14579027 ~ 14619203 (+)
abhd8b abhd8,LOC103359436 coding downstream 125705 14624279 ~ 14637054 (+)
axdnd1 axdnd1 coding downstream 450594 14949168 ~ 14961237 (+)
G95372 NA non-coding upstream 111228 14368922 ~ 14369226 (+)
LOC120565959 NA non-coding upstream 216568 14258285 ~ 14263886 (+)
G95299 NA non-coding upstream 257860 14220571 ~ 14222594 (+)
G95297 NA non-coding upstream 271892 14206339 ~ 14208562 (+)
G95287 NA non-coding upstream 335136 14145005 ~ 14145318 (+)
G95447 NA non-coding downstream 47962 14546536 ~ 14639046 (+)
LOC120565827 NA non-coding downstream 288494 14787068 ~ 14791606 (+)
G95492 NA non-coding downstream 380508 14879082 ~ 14879287 (+)
G95493 NA non-coding downstream 425378 14923952 ~ 14925603 (+)
G95496 crb1,LOC102787887,LOC102294192,LOC103365562 non-coding downstream 431938 14930512 ~ 14932081 (+)
LOC120564965 LOC102299696 other upstream 1080710 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 1097707 13379398 ~ 13382747 (+)
LOC120565776 NA other upstream 1138356 13335734 ~ 13342098 (+)
G95046 NA other upstream 1260082 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 1380009 13005568 ~ 13100445 (+)
G95460 NA other downstream 120784 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 190808 14689382 ~ 14704353 (+)
dennd1b NA other downstream 311794 14810368 ~ 14923845 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 1025355 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 1791249 16289823 ~ 16301000 (+)

Expression


Co-expression Network