LOC120565171 (LOC104931934)


Basic Information

Item Value
gene id LOC120565171
gene name LOC104931934
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20669336 ~ 20671151 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810649.1
TATAGACTATGAAATGTCTGATATTTGGAAATTATTTTGCAGGGTGTGTGATGTCATTCCAGCTTCCATAATGGCTGGCATGGTTCAAGGAAAGGATAAAAACACCGCTAAGCAGCGCTCACTTACAGTCTTTGCCACATCTGACAGGACCATTGACTTAATTTGGAAAACACCAACACATACTGTCTATAAGATGGCTTTGAGTCTTCCAATTGCACTGCCACTTGAAGAAATCACAGGTCTCACCCCCTTCGATGACATTGCTGATAACGTCCACTACTTGTTTGCCAAGGCTGGCGCAGGTTAAAGTTGTGGAATGGATGAGAGGACAGACCTGTGGACTCTGTGGAAAGGCTGATGGGGAAATCAGACAAGAATACCGCACGCCCAATGGACGCTTGACCAAGAACGCAGTCAGCTATGCTCATTCCTGGGTTCTGCCAGCCACGAGTTGTAGGGACAGCATTGAGTGTCGTATGAAGCTTGAATCTGTGCAACTGGAGAGGCAGGTAAATCTCCATGGCCAGGAATCCCAATGCCACTCTGTTGAGCCCGTACTGCGCTGCCTGCCCGACTGTTTCCCTGTGAAAACCACCACTGTCACTATTGGCTTCCACTGCCTTCCTGCTGATTCTGCCCTGAATCGTCCAGAGAGTCTGCGAAGCATCTACGAGAAGAGCGTGGACCTGAGAAAAACAGAAGCCCATCTAGCCTGCAGCTGCACTGCTCAGTGTGCTTAATAACACTTTCTTCTATTGGTCACTTACATCAATTCCATTTAAATAAATTGCATCTCAAAATAAGCGTTCTGTTAAGTTATTTTGACTATTGTGACTTCATAGATCTACAGTGATGCATTACTTAAAGGGAAAATGCACTATATGATCAATGTCCTTCCATATTGAGAATCGGtgtgctaaaaaaaaagtattttaccTTACTACTACACTGATTAGTCagctgctttttttcttttaatgtaaaTGTTTGGGAGGCTTATTccattattgttaaagaatgtACATTTGTGGACGACTATTGGCACCTTTTTATTTGAATCGTAAAACAATTGTGGAATCCAGAAAAAATGTTTGGTGTTCATATGTATTTCTTTGGTATGCAGAGAAACAAAAGTTGTAAAAATCTGTGACTATACAGATAAA

Function

NR:

description
vitellogenin-1-like precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810649.1 True 1163 mRNA 0.42 5 20669336 20671151

Neighbor

gene id symbol gene type direction distance location
LOC120565169 NA coding upstream 6638 20652948 ~ 20662698 (+)
vtg2 NA coding upstream 38999 20620595 ~ 20630337 (+)
spata1 spata1,LOC102789799 coding upstream 63999 20598582 ~ 20605337 (+)
rpf1 rpf1 coding upstream 73897 20588298 ~ 20595439 (+)
LOC120565357 NA coding upstream 81721 20582506 ~ 20587615 (+)
mfn1b mfn1 coding downstream 85636 20756787 ~ 20774813 (+)
actl6a actl6a coding downstream 139032 20810183 ~ 20816886 (+)
ndufb5 ndufb5 coding downstream 149097 20820248 ~ 20824575 (+)
usp13 NA coding downstream 154369 20825520 ~ 20867988 (+)
ccdc50a ccdc50 coding downstream 365126 21036277 ~ 21060839 (+)
G96742 NA non-coding upstream 54134 20614932 ~ 20615202 (+)
G96692 NA non-coding upstream 183450 20474807 ~ 20485886 (+)
LOC120565515 NA non-coding upstream 198589 20468553 ~ 20470747 (+)
LOC120565226 NA non-coding upstream 379955 20266651 ~ 20289381 (+)
G96653 NA non-coding upstream 620119 20047879 ~ 20049217 (+)
G96753 NA non-coding downstream 515 20671666 ~ 20674195 (+)
G96754 ssx2ip non-coding downstream 3106 20674257 ~ 20676737 (+)
G96758 NA non-coding downstream 30288 20701439 ~ 20701938 (+)
G96775 NA non-coding downstream 71916 20743067 ~ 20743775 (+)
G96777 NA non-coding downstream 78061 20749212 ~ 20749896 (+)
prkacba prkacb other upstream 104512 20548999 ~ 20564824 (+)
G96513 NA other upstream 1137659 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 1883700 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2004223 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 2809925 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 740185 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 883743 21554894 ~ 21557731 (+)
G97093 NA other downstream 1019746 21690897 ~ 21782000 (+)
G97321 NA other downstream 1612495 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1814360 22485511 ~ 22491235 (+)

Expression


Co-expression Network