si:ch73-63e15.2 (sbno2)


Basic Information

Item Value
gene id si:ch73-63e15.2
gene name sbno2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27894716 ~ 27971455 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810691.1
GAAATATTTTTTCGCTATTCAAAATGGCACCGTCTTAATCAGGAAGTGGAGAAAACAACTAAGAAGAATAAGTTGGATAAAATCCCTTATTTCTGTTACTTTGACGCGAGTCTTCTTTTAAAATCAGCCGGTGTGCCCGTGGTTTGGATTGAGAATAAGAAACATATTGACGGTCATGGAAAGCGTTTGCCCTTGTTAGAAGTACTATCTCAGACACAGCCAACGTGTGTGCGGCGGTCGGAGGGTGCATAGCCTAAGTCAGCTGGTGGTCATGTGTGAAGCTCTGGTCTGATGCCCACCCTGCCCTCAGCGCTGGCCATGGACGGGGAGAACTACCTGCATCCAGAAGGCCCTCAGCTGGACAGCAGCTTGTTCTCTGTGGCCACCTCTAACATGGAGaGTTCAATATATGCCTCCTCTGGTTCCTGGGGACCCTATCAGCAGGCTGGATACAGCATACACTGCCCTATGCAATCTGGAAACCAGCAATACCACTTGAACAGCAGcactaccaccaccactccgGATGTGCCCATGGACATGTACTCGGGATTCCCTGACGTGGACTTTGGCCTCAACCTCCCTAGGAATGGAGACTTCTCTCAGGACCTGTCCTGCATTGATGACCTCTCCACAAACTCTCTGTTCTCCTCTCCGGCTGACTCCCTGTCGGAGTATGCTGATGCCCAGCCCTTCATCAGCCCAGACAACCTGAACACAGTGCCCACCCTCTGGGACATCAACACTAGTACCACCACTGTACCAGCACAGAGCCAGTTAGAgCTGAATGGCACCAGCAGGTTTCATGGCTTGGCCAGTTTGGATGATATAACTGCTATTATCAGCACCCCACCTTTAGGAGGATTCCAGCCTCAGAGAACCCAGTCACccccagaggaggaagaggatgctgaggaagaggagacagaggaactGGGACATGTAGACACATATGCTGAGTACAGACCTTCCAAATCCACTATAGGAATTTCTCATCCTGACATAGTGGTGGAGACCAACACGCTATCCAGTGTCCCTCCTCCTGACATCACATACACTTTGTCTATCCCTGAGGCAACTATTAACCGTGGCCTACTGTCAGCTCTGCAGCTAGAGGCCATCATCTACGCCtgccagCAACACGAGGTTATCCTTCAGAACAACCAGAGGGCAGGCTTCCTGATCGGAGATGGAGCAGGGGTCGGAAAGGGACGCACCGTGGCAGGAATCATCCTGGAGAACTACCTTAAGGGAAGGAAGAAATCACTATGGTTCAGCATATCCAATGACCTGAAATTTGATGCAGAGAGGGATCTCAAAGACATAGATGCTCAGAATATTCCTGTGCATGCCTTAAACAAGATTAAGTATGGAGACACAGCTACCTCAGAAGGAGTCCTGTTTGCGACTTACTCTGCGCTGATTGGAGAGAGCCAGGCAGGAGGGCAGCACCGGACGAGAATTAAACAGATCATAGATTGGTGCAAGCCAGACTTTGACGGAGTTattatttttgacGAATGCCACAAAGCCAAGAACGCCACATCTACAAAGATGGGCAAGGCGGTGCTTGACCTGCAAAACAAGCTGCCCCGGGCCAGAGTGGTGTATGCCAGTGCCACAGGTGCCTCTGAGCCAAAGAACATGATCTATATGAGCCGCCTGGGGATCTGGGGTGAGGGCACGCCCTTCAGAGCCTTTGATGACTTCCTGCACGCCATCGAGAAGAGAGGTGTCGGTGCCATGGAGATTGTTGCCATGGACATGAAAGTGAGCGGGATGTACATCGCCAGGCAGCTTAGCTTCTCAGGGGTGTCTTTCCGCATTGAAGAGATCGCACTGGACAATGACTTCAAACTGGTCTATAACAAAGCTGCCATACTGTGGGCGGAGGCGTTGCAGGTGTTCATGCGTGCAGCCGATGAGCTGGGCCTGGTCAGCAGGAAGTCTCTCTGGGGGCAGTTCTGGTCGTCTCACCAGCGCTTCTTCAAATACCTCTGTATCGCCGCCAAGGTCCGCTGCCTGGTGGAGCTGGCCCAAAAGAGACCAAGGTGCATCGTTATTGGGCTGCAGTCTACTGGAGAGTCCCGAACCAGAGAAGTCCTGGATGAGAATGATGGGCATCTCGACAGATTTGTCTCTGCAGCAGAGGGAGTGTTCCAGTCTCTTGTAACAAAACATTTCCCTTCAGagaaacagaggagagagaaggcaCCAGGGAATAAGAGAAAACGGAAGCCTAGAGGTCGCCAGCCCAAGGTGCCCAAGCACACCATGGACAGCGGCGGTGTGATCAACATTAGCGACGACAGCAGCAGTGACTCCGATGGCATGGACACAGACTCCAACTCCTCACCAGACTCCCTGCTAGACAATGATGATGTCATCTTTGTTAACCACACTAGCTGCCAGACAGCCCGGATAGAGGAGATGAAACAGGGCCTCCTCAATAAAATAGCCATGCTGGGAAAAGAACTACCTCTCAATACCTTGGACGAGCTCATCGATAAGTTTGGAGGACCAGATAAAGTCTCAGAGatGACCGGTCGTAAGGGTCGTGTGGTGCGGTGTCTTGATGGCAGCGTCCGTTATGAGTCACGTGCTGAGCAGGGTCTTACCATCGACCACATCAACATCAAGGAGAAAGATCGCTTCATGGGTGCAGAGAAGTTGGTGGCCATCATCTCCGAAGCGGCCAGCTCTGGGATTTCCCTGCAGGCGGACAAGCGAGTGAAAAACCAGAAGCGCAGGGTCCACATGACTTTGGAGCTGCCTTGGAGTGCAGACAGGGCCATTCAGCAATTTGGTCGCACCCATCGGTCCAATCAGGTGACAGCCCCAGAGTACATCTTCCTCATCTCAGAGTTGGCTGGGGAGAGACGTTTTGCCTCCATTGTGGCTAAGAGACTAGAGAGCCTGGGTGCATTGACGCATGGAGACAGAAGAGCCACAGAATCAAGAGACCTGAGCAAGTACAACTTTGAGAACAAGTATGGTACCAAGGCTCTTGATAAAATCACCAAAGCAATCCTTGGCCACATAGAGAACAAGGTGCCCCCTCCCAAAGGCTACCCTGGGGGTGATGCCACTTTCTTCAGAGACATGAAAATTGGAATGATGGATGTGGGCATCTTTTGTCGAGAGTCTCGCTTTGGGATCAGTACTGAGAAAGACTGCAGCATCACCAAGTTCTTAAATCGCATTTTGGGCCTGGAGGTCCACAAGCAGAACTATCTCTTCCAGTACTTCACCGACAACTTTGACTATCTAATCGAGAAGGATAAGAAGGAGGGCAAATATGACATGGGAATCCTAGACCTAGCCCCGGGTAACGATGAGATCTATGAGGAAAAGCAGGAAACTTTCTTGACAGTTGGAAACCCTCAGGATGGACAGGTTGTTCTCTATAAGATCAGCGTGGACAGAGGCATGCCCTGGGAGGAGGCCTTCAACAGGTCACTGAAGCTCAGCGGCCCTGACGAGGGATTCTACCTGTCGCTGAAGCTGCGAGGTAACCACCCATGTGTGCTGCTAGCTGAGCAAGGAAGAGGCAAGAACCTGATTGTCTACAAGCCTAATATTGGCAAGCAGACCCATCCCGAGAGCCTGGACAACCTGCAGCAGCGTTACCGGAAGTCAACTCCGGAAGAAGCCAGGGACAGCTGGGAGAACCAGTTCACCTTCTCCTTCAAGAAGTGTAGTCATGCCAACTGGAATGGGAAGTGTAAGAAAATAGAAGAAGGTCAGGAGTGTTTGCAGGGCATGCGCCTCCGCCAGTACCACATGTTGTGCGGTGCTCTGTTGCGTGTGTGGAAGCGCGTATCCGATGTGGTGTCTGACATCACCAGCTCCAGCATCCTGCAGATTGTCCGCCTTAAAACCAAACAGCATAACAAGCAAGTCGGTATCAAGATTCCAGAAAACTGCGTGGCCCGTGTGCGCGACGAGCTGTTGCAAATGGACGAGGAGGTGAAGCGGAGACGAAAGGAGAGGGAGCAGCAGGCCGCCGAGCTGCGGCTGGTTGAGGAGCGCAATCGTAAAATGGAGCAGGAGAACAAACACCTCCTGGCAAATCTGTTCAACTCGAAGCCCATGCTCAACCACTCCCTCGTTCGGTCTCTCCCCCAGAATCAGATCTCTCCGCAACAGCGACTGCAAGCCCAAACCCAGTCCCCTTTACAGCAGCCCTCCCAGAACTTACCCCTGTCCCTACAGAGAAATCCCAGCCAAACCCAGCAAAGGACCCACATCTGGCCCAACAATTCCACCGCCACCAGCCAGGGCCCTGTCCCCAACACGGTTAGCATCCGCTCCAACTTCTCACAGTTTTACCCCCAGTCCTTTGTAACCCCTTTTCAGCAGCCGAAGAACCCATCACGTCCACTCCATCAGACCACACTGTCTCCCAACTTGTCTTCCAAGAATCCCCTGGACGAGATCTTGGACCTGACTGTGAGCTCGCCGTCTCCCTCCCCAGACACCACGGAGGGCGGACTCCATCTGGACAGTCTAGGGGTGCACACAGCATTCGGAGATGACTTTAACCTGGAGTCTCTGATCTCCCAGACTGCACCGAATGCCCAGCAGGCCGCACCAGTACAGCAGCCTATTTtgctacagcagcagcagcagcagcaacatctGCAGGCAACACAGCAGCAGAACCACAGCCTGCTCGCCAATAACCAAGACTTATTAGATTTATTTGACCTGCCCCTTTCTCCCCAGATGCCCACACAGAAAGCCAGCCCTTCGCCCTCTACCTCCTCCTGCTCTTCCTCCACGTCCTCCACCTCAAACAACCTGGCTTCGCACGTCTCCGCCGGCCTCCTGCCCGCATCCACCCTCATCCCGACATcgtcctcctcttccctcttctCCAACccgtcctcgtcctcctccttgTTTTCCAACTCTTCCCCTCACTTCTCCTCCAACTATCTCCTCCCTCAGTCAGACTCGCTGTCCTTGCCCAACGGCCACTCCGGCACCCTAGACGTTCGCGAGGCTCTGAACAGCATGCTACAGCGCGGTCTGGACCGGACGTCTGTCATTAGGTACCGGCAAGAAGACTCGGAGCTTTAACAGCAACAGCTCGTCTGGACTTTGTTTTCCTTCTgggtcattttgttttgttctgtcttTTAAAGCAGATTGTCTTGTTTGCTGCTGTCTATGATCGCACCCACGGACCTACTCCCTCTCCCCTCAGGGCCTATAGTCACATCACTGCCTGTCCTGCACTCGGCTCGCCCTTCTCTTTATCCACCTGTAGCGTTCACCTGCTTGAGGCTGTTTAGGCGATAGCAGGCTCCCATCAGTATCAGATTTCTGCACCAAAGTgtgtcctccacagtgaaaggCAGCTGTGAAAACAACAACCGTgataactgtattttattgaATATACGAGCtgtcaacaaacaacaaaagctcatTCATCGAGGTTCGGAAATCTGTAATAAGCCTCCCCGCTGCTGATTTTACGAGGTATGATTGGTGAAGTTGCTGGAAGCTCTAAATGCCTTTTCACCAGTTAAAACCACATCTTTAGACTTTGCTTTACTGCTACTTCGCTTCATGGCCGTTTTTGTCTTGACTAAAACAAGGCTGTATGCAAGGCTTGGTTTGAGTGAAACAAAAGATAGCGTTGAACTGGAAGatgaggaaagaaaacaaaacaaaaacagattaaaTCTTTTAGCTGATAAGCCATGAAATGCCtcagttttcatttgttttttcttctacaTGCTCCCTCTTGTTTCTCTCCCTGCTTGTATGAACACTAGTGTGAGGGGaaaaagggagaggaagagcagtcCGCTGTTGCAAACAGTGCCTTCTGGAGAAATCTTTAAATGCAGTCTTTAAAAATCCATGTAGCCTAATGTATAGATTTGTACTCTTggttattcattttaatttaaacatggtatatttgtatttaactTTTAGCCCCCTCAGTCAGTCAGTCGTTTGTGTTACACTATGGTGGTGGGTTTCAGGAAGAAGCCTCCGTTAAGCCTGTATGTGCTCGTATGATTGTCTGTGTGGACTTGTCCTTTTTTCTGTGTTCTTCTGTCCCCGTTGATATGACAATGTGCTTTTATTATTGAGCAGCATGGATAGGAATTGTGTCCAAAAATTTGATCtccctattttattttatttttagtttaagCTGACTATAACATTTAGTGATGTGACTCCTGGTTTTGATCTGATTTTGAATTTCTCAGGAACGTCTCGAATGCTTTGCTGTTGGTGTCGTTTTGACCAACaaacatatattaaaaaaaaaaaattgttttcaaGTCTGAGTACAGTGGATGACAAAGAATTTCAAGGTTTTATGGTCTTGAGTCtgaaaagctgtttttttttgtttttttttctttcaacaaaatcctcacttttttttttttttcagacaaaTTTCTGATTAaatgtgtttccatttcagGCGCCAAGGCTGTAAAACCATTTGAAACGTGCAGATTTGTGATGTTCACTGTGTATGATAGTGCATAGTTAAAAACCTGTGAGATCTGGCCATCTTTGTGTGAAAACGATGCACTGTAGTTGGTTCGTGACAAAATGCCGGGGTAAGTTCAAGTGATCAAAAAGCAATAAAACCATAATTCTACATTTGTTGTGAAACAGACATGCCTAAATACTGTTTACGCTCAACGGGCAAAGCTTTGTGGTTACCTTTGCATGGTATGAATCTCCTTATTTCTGTTGTGCTTCATAGTCTTTTAGTCAAACTGATTCTGAAATGCTTACAACCTTTTTTGTATAGTAAGTTTTCACGGGATGAACGCAATGCGTTCTTGGTGTTTTAGTCATCGTTATTATAAAAGTTcttgttatttatatttaagggatatttagattttagatatGTTATCCTGCTTATTAGAATAGTTAACAAAATGTTTGGTCAGGGAAGTTTCTAGTTTTCAAGATTACTATAAAACAAATTCTATTATAACCTGCCACCAAATAAGATTGCACTGTTCTGTACTGCTGTACAGCGTCTGGATTTATTTCTGCTCATTTCAGCTTTTGCTTTTCTCAAGCAGAATTGTTTCTCCAACTCGTAGACCTTTTTTGTCAGGCCTCCAGTTTGCAGAGAGATACCAAAGTATTCCACAGacacccctcccacccccaccccgacccccacccccacccctaaaGTTACTGGCTCGAAGATAGCAGACCTTTTTTTCTCaatctcaggaagaaacctacAGGAGGTGTTAACGGCGGGGCGTTTAGCAGAAATCTACCATTTCCCCTTACAACAGTGGTGAAACTATCCAGTACGTGTGCTATTTTTGTTCTTAACTCTGTGCTGTGACACTTGCTGTATTTATGTTTTAGACTTTATGTAATGGGTTTGTTGTTTGTCCTTGTGAACATGTCAATGATTCTAAAACGTTTATGCCTTCTTAGGGCAAAGAGCAAAAGGCGGTTTCTTTTTaagaaacattatttttctgtggaccgttttttttcattttcattttcatttgtgtTGGACATTTAATTCTTGTTAAAACTGACCGATCTTTAAGTCGATTCGCACCTGGATTATACTGATATGTGCAATTGATCTGTCCAAGCCTTCACCTCTCCCCTCAGTGTAACAGATGTTTAGGTTTAGACTCACAGTATCTCCAGTTCTTGTaaacacttttctttcttttttattagcAGACTATAGCATTCATATAGTCTTTTCTGGTACCCTCGATAATTTTGCTTTAAATATTCCTCGTCAGGCACATTCCGAGACATCAGTCTGCAATAGACTtgcctttgttttttcttttatagccACACAAATAAAGCTTTATGCATTTGAGGGATATGGACCgcatttaaggaaaaaaaaaaagatttgtagTAACAGTATAGTTTTAACGTTTTATTATCATTTTGCACTAAGAATGGCATAATCAAGTTACTGTTCTCTTGTGGGTTATGATTGAGCGTTGCaagctttttcttttctgatCTTTGATGGATAGCTCTGTGTATACTGTAACCATCTTTCCTGTTTCTCCACCGTTTGCATATTACATACATGTTATCACTCTCAAAATAATTTATTgctaacaaaaaaaatgaaacaaaaaacatgctactgattgtatgtatttttaaacaaagcctattttttctgtaaaaaacaaacaaaaaaaactgtgttcAGCACTTTTATTCTGGGTTGTGCTTTtgttttctatatatttataatttagatccaaatgtatatattgtaaaATTTGTGCCTTTCGACtaattcttttaaaaaaaaaaaaaaagttttctac

Function

symbol description
sbno2 Predicted to enable chromatin DNA binding activity and histone binding activity. Involved in several processes, including cellular response to interleukin-6; macrophage activation involved in immune response; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: protein strawberry notch homolog 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810691.1 True 8348 mRNA 0.47 32 27894716 27971455

Neighbor

gene id symbol gene type direction distance location
rfxank rfxank coding upstream 279249 27612852 ~ 27615467 (+)
tmem221 tmem221 coding upstream 283634 27605960 ~ 27611082 (+)
tmem161a tmem161a coding upstream 309776 27577974 ~ 27584940 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding upstream 374375 27513155 ~ 27520341 (+)
midn midn,LOC101067279 coding upstream 747560 27120698 ~ 27147156 (+)
tjp3 tjp3 coding downstream 1338 27972793 ~ 27997414 (+)
arhgap45b arhgap45 coding downstream 28636 28000091 ~ 28017688 (+)
gpx4a gpx4 coding downstream 50490 28021945 ~ 28027238 (+)
LOC120564862 LOC104939946,LOC103370860,LOC101073928,LOC105932471,LOC103155165 coding downstream 114435 28085890 ~ 28090584 (+)
march2 march2 coding downstream 119250 28090705 ~ 28098805 (+)
G98770 LOC104966597,LOC101073477 non-coding upstream 12405 27879317 ~ 27882311 (+)
G98766 hapln4 non-coding upstream 35593 27855676 ~ 27859123 (+)
G98763 NA non-coding upstream 45778 27848733 ~ 27848938 (+)
G98723 NA non-coding upstream 307608 27586425 ~ 27587108 (+)
G98685 NA non-coding upstream 395829 27498223 ~ 27498887 (+)
G98972 NA non-coding downstream 341139 28312594 ~ 28318888 (+)
LOC120565132 NA non-coding downstream 478088 28449543 ~ 28460210 (+)
G99007 hook1,LOC102781169,LOC106584290 non-coding downstream 598193 28569648 ~ 28570858 (+)
G99108 NA non-coding downstream 716427 28687882 ~ 28688118 (+)
G99189 NA non-coding downstream 999032 28970487 ~ 28972086 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 61861 27659696 ~ 27832855 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 517662 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 1098429 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 1552423 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 1599334 26283052 ~ 26295382 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 56509 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 165814 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 800907 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 803920 28775375 ~ 28865487 (+)
G99297 NA other downstream 1692178 29663633 ~ 29665090 (+)

Expression


Co-expression Network