rfxank (rfxank)


Basic Information

Item Value
gene id rfxank
gene name rfxank
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27612852 ~ 27615467 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810830.1
GGACCTTCTGACGTGTTCCTGCAGTCGGTAGAGAGCCACTGACGGCTCGTTAGCTAGCACGTACATGCTCTCCGTGAATTTGTCCGTCACTGTAGAATCAAAGAAGTACAGACAAATGCAGAGAATACCTGACCAGTGttagaaaaggagagaaaaccAGAGGGGAAACATCCAACAGCATGGGACATGAACAAACAGCGATGTAAAcatagctagcattagcttagcGGCTAAGGCGAGCTAACAGCTACTAGCTTCGTTGCAAGGTGAACAATGAGtgATGATGCAGGCCAGAGGTGATGAAGAGGTTGCAGATGGCCAAAATAGTCGGTCATCTAACGCGAATGTTTGTCCTTCCGAGTCCAGAGATGAGAGGTCCAATGTGTCTCCAGAAAACATGGATGTGGATGAAGAGGGTTTGTTCATACACCCCACCACTCTGACCAACAAGCAGCGTGGGAATGAGGTTACAGTACGCCCAGCAACATTAGACGCTCTGTCCATACACCAGTTGGCAGCTCAAGGCGAGGTTTCACAAGTGGCGGCACACCTGAGTAAAGACAGTTCACTGCTGAGCAAACAGGATGAACGGGGCTTTACGCCTCTCATgtgggcagcagcgtttggagAGAAAGCAGTGGTGGATTTTCTCTTGGAAAAGggCGCAGACCCCAAAGCAATTGCGAGGGAGCGAGAGAGTGCCCTGACACTGGCCAGCTCTGGGGGTTATGTGGACATTGTCGAGGCTCTTCTCAGACATGGAGTAGACATTAACACTTACGATTGGAACGGTGGGACTCCTCTTCTTTATGCTGTACGAGGGAACCACATCAAATGTGTAGAGGCACTCTTGGCCAAAGGGGCTGACATGACCATTGAGTCTGATTCTGGGTACAGTCCAATGGCCTTGGCTGTTGCCCTTGGACACAAAAAGATTCAGAAAGTGTTGGAGGACCATATTCTCAAACTCTACAAACCAACAACATGACACTGGTTAAAGTCAATAACTGGAAATCTGGGCTCACACAGTTGATCTCAGATCTGCAACCAGCTATCATCGATGGTGAGATGACCAAGACTTCTGTCACAATAACAAGTCATTGTAATACATCAGTTTATATGCAGAGACATTTAAACTAAAATGCAACATTGTGCAGCAGAATTATTTTGTTTGGCTGAAGGACAGCAAAAAAAGGACTGTGAACCAAGTTTTaataaaaatttattttta
>XM_039810831.1
CGTTACACCGGTTGAATCCAACGTGTCCTCGTTTattttgtgaaaataaatgatttattaaatagCTAATCAACTGAGCGACAAGTAATGTATCTCGGTACATTTCGTGCACTTCCAGCAAGACCCATCGTGCGACGCGAAATAATTTACTTTCAGTTTGTCCAAAAGGAAGTTAGCGCAAATTAGACTCTAAGGCTGGATGTGtgATGATGCAGGCCAGAGGTGATGAAGAGGTTGCAGATGGCCAAAATAGTCGGTCATCTAACGCGAATGTTTGTCCTTCCGAGTCCAGAGATGAGAGGTCCAATGTGTCTCCAGAAAACATGGATGTGGATGAAGAGGGTTTGTTCATACACCCCACCACTCTGACCAACAAGCAGCGTGGGAATGAGGTTACAGTACGCCCAGCAACATTAGACGCTCTGTCCATACACCAGTTGGCAGCTCAAGGCGAGGTTTCACAAGTGGCGGCACACCTGAGTAAAGACAGTTCACTGCTGAGCAAACAGGATGAACGGGGCTTTACGCCTCTCATgtgggcagcagcgtttggagAGAAAGCAGTGGTGGATTTTCTCTTGGAAAAGggCGCAGACCCCAAAGCAATTGCGAGGGAGCGAGAGAGTGCCCTGACACTGGCCAGCTCTGGGGGTTATGTGGACATTGTCGAGGCTCTTCTCAGACATGGAGTAGACATTAACACTTACGATTGGAACGGTGGGACTCCTCTTCTTTATGCTGTACGAGGGAACCACATCAAATGTGTAGAGGCACTCTTGGCCAAAGGGGCTGACATGACCATTGAGTCTGATTCTGGGTACAGTCCAATGGCCTTGGCTGTTGCCCTTGGACACAAAAAGATTCAGAAAGTGTTGGAGGACCATATTCTCAAACTCTACAAACCAACAACATGACACTGGTTAAAGTCAATAACTGGAAATCTGGGCTCACACAGTTGATCTCAGATCTGCAACCAGCTATCATCGATGGTGAGATGACCAAGACTTCTGTCACAATAACAAGTCATTGTAATACATCAGTTTATATGCAGAGACATTTAAACTAAAATGCAACATTGTGCAGCAGAATTATTTTGTTTGGCTGAAGGACAGCAAAAAAAGGACTGTGAACCAAGTTTTaataaaaatttattttta
>XM_039810832.1
TCCGTCACTGTAGAATCAAAGAAGTACAGACAAATGCAGAGAATACCTGACCAGTGttagaaaaggagagaaaaccAGAGGGGAAACATCCAACAGCATGGGACATGAACAAACAGCGATGTAAAcatagctagcattagcttagcGGCTAAGGCGAGCTAACAGCTACTAGCTTCGTTGCAAGGTGAACAATGAGtgATGATGCAGGCCAGAGGTGATGAAGAGGTTGCAGATGGCCAAAATAGTCGGTCATCTAACGCGAATGTTTGTCCTTCCGAGTCCAGAGATGAGAGGTCCAATGTGTCTCCAGAAAACATGGATGTGGATGAAGAGGGTTTGTTCATACACCCCACCACTCTGACCAACAAGCAGCGTGGGAATGAGGTTACAGTACGCCCAGCAACATTAGACGCTCTGTCCATACACCAGTTGGCAGCTCAAGGCGAGGTTTCACAAGTGGCGGCACACCTGAGTAAAGACAGTTCACTGCTGAGCAAACAGGATGAACGGGGCTTTACGCCTCTCATgtgggcagcagcgtttggagAGAAAGCAGTGGTGGATTTTCTCTTGGAAAAGAACGGTGGGACTCCTCTTCTTTATGCTGTACGAGGGAACCACATCAAATGTGTAGAGGCACTCTTGGCCAAAGGGGCTGACATGACCATTGAGTCTGATTCTGGGTACAGTCCAATGGCCTTGGCTGTTGCCCTTGGACACAAAAAGATTCAGAAAGTGTTGGAGGACCATATTCTCAAACTCTACAAACCAACAACATGACACTGGTTAAAGTCAATAACTGGAAATCTGGGCTCACACAGTTGATCTCAGATCTGCAACCAGCTATCATCGATGGTGAGATGACCAAGACTTCTGTCACAATAACAAGTCATTGTAATACATCAGTTTATATGCAGAGACATTTAAACTAAAATGCAACATTGTGCAGCAGAATTATTTTGTTTGGCTGAAGGACAGCAAAAAAAGGACTGTGAACCAAGTTTTaataaaaatttattttta

Function

symbol description
rfxank Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency and severe combined immunodeficiency. Orthologous to human RFXANK (regulatory factor X associated ankyrin containing protein).

NR:

description
DNA-binding protein RFXANK-like

GO: NA

KEGG:

id description
K08062 RFXANK; regulatory factor X-associated ankyrin-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810830.1 True 1231 mRNA 0.47 9 27612852 27615467
XM_039810831.1 False 1157 mRNA 0.45 9 27613380 27615467
XM_039810832.1 False 1023 mRNA 0.45 8 27612934 27615467

Neighbor

gene id symbol gene type direction distance location
tmem221 tmem221 coding upstream 1770 27605960 ~ 27611082 (+)
tmem161a tmem161a coding upstream 27912 27577974 ~ 27584940 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding upstream 92511 27513155 ~ 27520341 (+)
midn midn,LOC101067279 coding upstream 465696 27120698 ~ 27147156 (+)
atp5f1d atp5d coding upstream 512596 27090223 ~ 27100256 (+)
si:ch73-63e15.2 sbno2 coding downstream 279249 27894716 ~ 27971455 (+)
tjp3 tjp3 coding downstream 357326 27972793 ~ 27997414 (+)
arhgap45b arhgap45 coding downstream 384624 28000091 ~ 28017688 (+)
gpx4a gpx4 coding downstream 406478 28021945 ~ 28027238 (+)
LOC120564862 LOC104939946,LOC103370860,LOC101073928,LOC105932471,LOC103155165 coding downstream 470423 28085890 ~ 28090584 (+)
G98723 NA non-coding upstream 25744 27586425 ~ 27587108 (+)
G98685 NA non-coding upstream 113965 27498223 ~ 27498887 (+)
G98663 yjefn3,LOC104950619 non-coding upstream 208015 27401644 ~ 27404837 (+)
G98654 NA non-coding upstream 217569 27394321 ~ 27395283 (+)
G98653 NA non-coding upstream 219886 27392273 ~ 27392966 (+)
G98763 NA non-coding downstream 233266 27848733 ~ 27848938 (+)
G98766 hapln4 non-coding downstream 240209 27855676 ~ 27859123 (+)
G98770 LOC104966597,LOC101073477 non-coding downstream 263850 27879317 ~ 27882311 (+)
G98972 NA non-coding downstream 697127 28312594 ~ 28318888 (+)
LOC120565132 NA non-coding downstream 834076 28449543 ~ 28460210 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 235798 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 816565 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 1270559 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 1317470 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 1572986 26034751 ~ 26039866 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 44229 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 412497 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 521802 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 1156895 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 1159908 28775375 ~ 28865487 (+)

Expression


Co-expression Network