tubgcp5 (tubgcp5)


Basic Information

Item Value
gene id tubgcp5
gene name tubgcp5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40052317 ~ 40069649 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810895.1
AGAGCCTTGAAGAGAAGAGGTTCCAACGGTTGCTACGTACTGTAACTTGCTGGAGTAACGTACAATTAATTGTGGGACATAGCGATAAATTAGTGCTCCCTTTGAATGGTGTATTTAGTCGGTTGTGTGTTCTTATCACTAGTCATTGGACGTTTTCGCTGCACAAGTTGACAGTTTTAAACATGAACTTTTACATGGAAATTTAAACATATCAATGTTTAAGTTTAGGTTGATGTTGCGCATGCGTATTCAGCCTCGTTTGTTGTTGGAGGCAAACGCCGCGCGGTTGTGAAATTGAAGGAATCAGTGGAAACGTAGCTAACGTTGTCGTGTCTTTGAAATAAATGGCAGTATTTAACATTTTATCTTTCGTGCTAGCCCTTTAGTTTGCAGAGTCGCAAGGTCAGCAGCAGGACTGACCGAAAGCGAGTtctactagctagctacatgctTGTAACGTCAAGCTAACTGCAGCGCCGCTGTCAACATCAACATGACACACTGGAGCACCTTcgaaaaggagacagagagagaaacgaAAGCGTTAATAAGATGTATCAGCGGGGTCGAGGAAGAGGATGACCAGAACTTTCAGCTGGCACTGAAATTTGCCTGGACTAATTTCAGGTTTCATCGTTTCTTGGACGTGGACAGCCATAAAGTCCAACGCAGTATAAGTGGAATCTATGAAAAGCTCATGGTCCACTCAGACGTGAGTAAAGCAGAAAGCTGGATGAGGCTGACTGAAGAGTTCCTGAACACACCTTTACCTAATACAGATGGAACAAAGAGTGATGTACACTACAGTGTCCTGTCACTGCTGCTCTTATTATCGGAGTCCCCCTCAAACACAAACTTTACTGAGAGACCCAGGGTAAAGGAGGCCGAAGAAGTGGACAACTTTGACTGGGCCAAATATCTGATGGAGGGTGAGGACATAGACATTGGACCATATCCAGATACCCCTgagtGGTCTGAGGAAGAGAGCGAAGATGATGACAGccagcagccaatcagcaggGAAGACTCTGGGATCCAGTTGGACAGAACGCCCCAGGAAGACcaggacaacaacaacaagacagtTCCAGTTACATGGAAAGtggGTGAGCCTGACGCTCGGGCCTGGCTTGAACAGCATGTAGTGACACCGTACTGGGTGGCTCATGCTCCTCGTTTTCCTCACAGCTTGCATTTGCACTCCAACTTGCTCAATGTGTGGGATCAGCACTTGTATAACACTGATCCATTGTATCTGCCGGAAGAAAAGGCCTTTGTCACAGAGACCCAAGTCATACGGGAGACATTGTGGCTTCTCTCTGGGGTGAAGAGACACTTTATATTCCAACACCATGATGGAAAAGTGTCAGTAAGGAATAACGTGGTGGTAACTCATCTGACCAGTaactgtctgcgctctgTACTGGAGCATATTGCTGTGTACGGGCAGGCGGTGTTCAGGCTGCAGAGGTTCATAGACGAGGTGACGGGGTACAGCTCGGAGCCGTGCCCACCAGGCTCCGGTTCCTCCTACAGCTCCAAGAAGGGCTCCGAGCCTCCCTTCAGGACCTACCAGGCCTTTGTGTGGGCACTCAACAAGTATTTTACCAGCTTCAAAGAGGAGCTCACCACAATTGAGAGAGAGATCATATGCAATGATGAGACGGTGACCCTGTCTGCCGTTCTGGAGCGACTCAACCCTCACTTGGCACAAATCAAAGTGCTGCACAAAGTCTTCTGCACCGGAGTCGCCGAAGTCCCCCCTGAGACCCCGAATGTGGTGCGGGCCTCTCACTTGCTCAACACCCTGTACAAAGCTATCATAGAGTATGACAGCGTCGGGGAAGCCTCAGAGCAAGCGGTGGCCTTGTTATTTTCTCTGTGGACGGAGACAGTCAGACCATATCTGGAGATTGTGGATGAATGGATTGTTCACGGCCACCTGTTTGACCCTGCCAAAGAGTTCATCATCCAGAGGAACAAGGACGTCCCAGTGAACCACAGGGACTTCTGGTACGCCACGTACACGCTGTACAGTGTGTCTGAGACGGTGGAGAATGAGGAGAAGCTGAACGATGCAGCCAGCGGGAGCTCTGGAGGCGATCAGGGCTCCAGCAACAGGCAGCTCACCATGGTGTCCTTCCTCAAACCCGTGCTCAAGCAGATCATCATGGCCGGGAAGTCCATGCAGCTGCTCAGAAATCTGGACTGCAAAGAGACGGAACAGTCTGAGAGATCCTCCAGAGATGCAGAGAGGAAGAGTTTATACACACTGTTTCTGGAGTCAGTGCAATCACGCCTTTGTAGCCAAGAGGAGTCTCCCACAGACACCGTAACGGAACAACAGGCCACCAGGAGGAGCCTCATAAAGATGCAGGCCATCATTGCACAGAACCTGGAGATCGAAGACGTCCACGATCCGTTGTTGGCCATCAACTTTGCCAGGCTGTACTTGGAGCAGACTGACTTCCATGAGCGTTTCTCTGGAGGCGATTTCATCGTGGACCGCTCATCTCAGGCTGTCACCTGCCAAACATTTGAGCTCACCCTGCGCTCTTGCCTCTACCCCCACATTGAGAGGAGGTACATTGAGTGCTGCGGGAACCTCATGAAGACACTGAAAAAAGACTACAAGCTGCTGGAATACCTCCAAGCTATGAGGAACTACTTCCTGCTGGAAGCTGGAGACACCATGTACGACTTTTACACGGCCATCTTTGACAAGGTGCAGGAGAAGGAGAGCTGGCAGCAGCCGTCTTTTCTCAACGTTCAGCTGCAGGAGGCAGTGGGACAGCGCTACCCGGAGGACAGCGGCAGGTTGTCAGTCTTCTTGGAGACCATTGACCCTGCCAGGAAAAAACATCCTGTGAATAATTTAGAAGTGCTTACCCTGGGTTACAAGGTTCCCTGGCCGGTTGACATTGTGATCAGCTCGGAGTGTCAGAAGATCTACAATCAAGTGTTTCTCCTCCTGCTGCAGATCAAATGGGCCAAAtacagtttggacacacttcGGTTCAGTGATTTCACAGACATCACTAAGAAACTGGAGGGAGCTCTGGCTGAGGAAGTAAAGGTCAAAGAGCCTATAAATCAGCAGATTCACAGAATGTGCCTGCTGCGGGTCAAACTAATGCACTTTGTCAACAGCCTTCACAACTACATCATGACCAGGATTCTACACAGCACGGGACTGGAGTTTCAGCACCAAGTACAGGAAGCAAAGGACCTGGACCAGCTGATCAAGATCCATTACAGATATTTGGCAACCATTCACGACCGCTGCCTCCTGAGGGAGAAGGTCAGTTTTGTGAAAGAGGCAATAATGAAGGTTCTCAATCTAGTCCTCATCTTCTCTGACCGGTGGCAAACTGGATTTGGAGCCTGGAAGATCGAGTCCATCGATAAAATGGAATCTGATTTCAAAAACTGTCACATGTTCCTTGTGACGATACTCAACAAGGCTGTATGTCGTGGCTCCTTCCCTCATTTGGAGTCTCTCGCCCTCTCCCTGATGGCAGGGTTTGAGCAGTGCTGAGGAACCACGCTGTCCATGCTGTCTGTTTGATGTGGTGGACTGAACTCCACTGTTTGCTTCTCTGTCTTGTTGCTGTCTGTTTTCTGACTGCTGTCATTGTTCATCATGATGATGTGCAACATATGATGTCATTATCTGCTCCGATTGCTGGAGATGGACTCGGACTACGAGATGTTGGAGGATTATCTGTGTCTTTTTAGGACCCTAGTCAAACAAGCTACTTGTGAACATACATTAAGAAAGTGTAACTTTTTGTATGAAGGTGTTTTTTATGAGCTGTTATGTCGATTGTTAATAATGTGTATATACGAAGCACAATAAATCTTGAACAAAGA
>XM_039810896.1
AGAGCCTTGAAGAGAAGAGGTTCCAACGGTTGCTACGTACTGTAACTTGCTGGAGTAACGTACAATTAATTGTGGGACATAGCGATAAATTAGTGCTCCCTTTGAATGGTGTATTTAGTCGGTTGTGTGTTCTTATCACTAGTCATTGGACGTTTTCGCTGCACAAGTTGACAGTTTTAAACATGAACTTTTACATGGAAATTTAAACATATCAATGTTTAAGTTTAGGTTGATGTTGCGCATGCGTATTCAGCCTCGTTTGTTGTTGGAGGCAAACGCCGCGCGGTTGTGAAATTGAAGGAATCAGTGGAAACGTAGCTAACGTTGTCGTGTCTTTGAAATAAATGGCAGTATTTAACATTTTATCTTTCGTGCTAGCCCTTTAGTTTGCAGAGTCGCAAGGTCAGCAGCAGGACTGACCGAAAGCGAGTtctactagctagctacatgctTGTAACGTCAAGCTAACTGCAGCGCCGCTGTCAACATCAACATGACACACTGGAGCACCTTcgaaaaggagacagagagagaaacgaAAGCGTTAATAAGATGTATCAGCGGGGTCGAGGAAGAGGATGACCAGAACTTTCAGCTGGCACTGAAATTTGCCTGGACTAATTTCAGGTTTCATCGTTTCTTGGACGTGGACAGCCATAAAGTCCAACGCAGTATAAGTGGAATCTATGAAAAGCTCATGGTCCACTCAGACGTGAGTAAAGCAGAAAGCTGGATGAGGCTGACTGAAGAGTTCCTGAACACACCTTTACCTAATACAGATGGAACAAAGAGTGATGTACACTACAGTGTCCTGTCACTGCTGCTCTTATTATCGGAGTCCCCCTCAAACACAAACTTTACTGAGAGACCCAGGGTAAAGGAGGCCGAAGAAGTGGACAACTTTGACTGGGCCAAATATCTGATGGAGGGTGAGGACATAGACATTGGACCATATCCAGATACCCCTgagtGGTCTGAGGAAGAGAGCGAAGATGATGACAGccagcagccaatcagcaggGAAGACTCTGGGATCCAGTTGGACAGAACGCCCCAGGAAGACcaggacaacaacaacaagacagtTCCAGTTACATGGAAAGtggGTGAGCCTGACGCTCGGGCCTGGCTTGAACAGCATGTAGTGACACCGTACTGGGTGGCTCATGCTCCTCGTTTTCCTCACAGCTTGCATTTGCACTCCAACTTGCTCAATGTGTGGGATCAGCACTTGTATAACACTGATCCATTGTATCTGCCGGAAGAAAAGGCCTTTGTCACAGAGACCCAAGTCATACGGGAGACATTGTGGCTTCTCTCTGGGGTGAAGAGACACTTTATATTCCAACACCATGATGGAAAAGTGTCAGTAAGGAATAACGTGGTGGTAACTCATCTGACCAGTaactgtctgcgctctgTACTGGAGCATATTGCTGTGTACGGGCAGGCGGTGTTCAGGCTGCAGAGGTTCATAGACGAGGTGACGGGGTACAGCTCGGAGCCGTGCCCACCAGGCTCCGGTTCCTCCTACAGCTCCAAGAAGGGCTCCGAGCCTCCCTTCAGGACCTACCAGGCCTTTGTGTGGGCACTCAACAAGTATTTTACCAGCTTCAAAGAGGAGCTCACCACAATTGAGAGAGAGATCATATGCAATGATGAGACGGTGACCCTGTCTGCCGTTCTGGAGCGACTCAACCCTCACTTGGCACAAATCAAAGTGCTGCACAAAGTCTTCTGCACCGGAGTCGCCGAAGTCCCCCCTGAGACCCCGAATGTGGTGCGGGCCTCTCACTTGCTCAACACCCTGTACAAAGCTATCATAGAGTATGACAGCGTCGGGGAAGCCTCAGAGCAAGCGGTGGCCTTGTTATTTTCTCTGTGGACGGAGACAGTCAGACCATATCTGGAGATTGTGGATGAATGGATTGTTCACGGCCACCTGTTTGACCCTGCCAAAGAGTTCATCATCCAGAGGAACAAGGACGTCCCAGTGAACCACAGGGACTTCTGGTACGCCACGTACACGCTGTACAGTGTGTCTGAGACGGTGGAGAATGAGGAGAAGCTGAACGATGCAGCCAGCGGGAGCTCTGGAGGCGATCAGGGCTCCAGCAACAGGCAGCTCACCATGGTGTCCTTCCTCAAACCCGTGCTCAAGCAGATCATCATGGCCGGGAAGTCCATGCAGCTGCTCAGAAATCTGGACTGCAAAGAGACGGAACAGTCTGAGAGATCCTCCAGAGATGCAGAGAGGAAGAGTTTATACACACTGTTTCTGGAGTCAGTGCAATCACGCCTTTGTAGCCAAGAGGAGTCTCCCACAGACACCGTAACGGAACAACAGGCCACCAGGAGGAGCCTCATAAAGATGCAGGCCATCATTGCACAGAACCTGGAGATCGAAGACGTCCACGATCCGTTGTTGGCCATCAACTTTGCCAGGCTGTACTTGGAGCAGACTGACTTCCATGAGCGTTTCTCTGGAGGCGATTTCATCGTGGACCGCTCATCTCAGGCTGTCACCTGCCAAACATTTGAGCTCACCCTGCGCTCTTGCCTCTACCCCCACATTGAGAGGAGGTACATTGAGTGCTGCGGGAACCTCATGAAGACACTGAAAAAAGACTACAAGCTGCTGGAATACCTCCAAGCTATGAGGAACTACTTCCTGCTGGAAGCTGGAGACACCATGTACGACTTTTACACGGCCATCTTTGACAAGGTGCAGGAGAAGGAGAGCTGGCAGCAGCCGTCTTTTCTCAACGTTCAGCTGCAGGAGGCAGTGGGACAGCGCTACCCGGAGGACAGCGGCAGGTTGTCAGTCTTCTTGGAGACCATTGACCCTGCCAGGAAAAAACATCCTGTGAATAATTTAGAAGTGCTTACCCTGGGTTACAAGGTTCCCTGGCCGGTTGACATTGTGATCAGCTCGGAGTGTCAGAAGATCTACAATCAAGTGTTTCTCCTCCTGCTGCAGATCAAATGGGCCAAAtacagtttggacacacttcGGTTCAGTGATTTCACAGACATCACTAAGAAACTGGAGGGAGCTCTGGCTGAGGAAGTAAAGGTCAAAGAGCCTATAAATCAGCAGATTCACAGAATGTGCCTGCTGCGGGTCAAACTAATGCACTTTGTCAACAGCCTTCACAACTACATCATGACCAGGGTACGGTATGCTGCAAGTAAAAGAAGAGAGACTATTTTGAAAAGTCATATTGGTGGTGCTTTCAATGACAGCAGGAAAGTACacaatttgattaaaaaaaacactagtaTGGTACTTCAAATTGAAATGTAATAATTTGCATACAACCTTAAATCTGTCTGCATTGTATCT

Function

symbol description
tubgcp5 Predicted to enable gamma-tubulin binding activity. Predicted to contribute to microtubule minus-end binding activity. Predicted to be involved in meiotic cell cycle; microtubule cytoskeleton organization; and mitotic cell cycle. Predicted to act upstream of or within microtubule cytoskeleton organization. Predicted to be located in cytoplasm and microtubule cytoskeleton. Predicted to be part of gamma-tubulin complex. Predicted to be active in centrosome and equatorial microtubule organizing center. Orthologous to human TUBGCP5 (tubulin gamma complex associated protein 5).

NR:

description
LOW QUALITY PROTEIN: gamma-tubulin complex component 5

GO: NA

KEGG:

id description
K16572 TUBGCP5, GCP5; gamma-tubulin complex component 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810895.1 True 3873 mRNA 0.49 23 40052317 40069649
XM_039810896.1 False 3346 mRNA 0.49 20 40052317 40068442

Neighbor

gene id symbol gene type direction distance location
slc9a7 NA coding upstream 15997 40006247 ~ 40036320 (+)
gtpbp6 gtpbp6,LOC103356937,LOC102777366 coding upstream 88781 39959058 ~ 39963536 (+)
nit2 nit2 coding upstream 98063 39945687 ~ 39954254 (+)
tbc1d23 tbc1d23 coding upstream 112910 39923558 ~ 39939407 (+)
tomm70a tomm70 coding upstream 131527 39911630 ~ 39920790 (+)
cyfip1 cyfip1 coding downstream 2393 40072042 ~ 40125946 (+)
herc2 LOC103356925 coding downstream 69784 40139433 ~ 40197238 (+)
oca2 oca2 coding downstream 136377 40206026 ~ 40260251 (+)
gabrb3 gabrb3,LOC106914751,LOC103365202 coding downstream 348344 40417993 ~ 40486609 (+)
ube3a ube3a,LOC103365788 coding downstream 498298 40567947 ~ 40582064 (+)
LOC120565265 NA non-coding upstream 6811 40044182 ~ 40045506 (+)
G101666 NA non-coding upstream 33624 39984470 ~ 40018693 (+)
G101674 rp2 non-coding upstream 48478 40000905 ~ 40003839 (+)
G101600 NA non-coding upstream 143807 39905036 ~ 39908510 (+)
G101579 NA non-coding upstream 180144 39871656 ~ 39872173 (+)
G101687 nipa1,LOC102781059 non-coding downstream 60152 40129801 ~ 40133354 (+)
G101688 NA non-coding downstream 65558 40135207 ~ 40135500 (+)
G101796 NA non-coding downstream 190714 40260363 ~ 40260609 (+)
G101823 NA non-coding downstream 417142 40486791 ~ 40487021 (+)
G101831 NA non-coding downstream 437851 40507500 ~ 40507759 (+)
LOC120565298 cdkl5,LOC103356958 other upstream 312040 39693912 ~ 39740277 (+)
reps2 reps2,LOC102792668 other upstream 459555 39561061 ~ 39592762 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other upstream 587867 39454120 ~ 39464450 (+)
prdm5 prdm5 other upstream 690584 39323584 ~ 39361733 (+)
usp46 usp46 other upstream 1171712 38866435 ~ 38880605 (+)
atp10a atp10a other downstream 445444 40515093 ~ 40559895 (+)
G102165 NA other downstream 1383025 41452674 ~ 41453306 (+)

Expression


Co-expression Network