henmt1


Basic Information

Item Value
gene id henmt1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10617375 ~ 10627039 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811026.1
TCTTCGTTGTCCAAAAAAacgaataaaataaaaatactgcgTCAACACTAAATAATAACAGCGCCCTCTGGGGTCCGACGAGGACGGTAGCTGGACGCGAAAATGGATCCAATCTTCAGTCCTCCActtcacagacagagacatcagTTTGTCATAGATTTTGTCAAGAGGAACAAACCCAAAAAGGTGGTGGACTTGGGCTGCAGTGAGTGCAGCCTTCTTCAAAAACTGAAGTTTCACCGTGAAATTGAACTACTGGTTGGAGTGGACATCGATGGtgccaatataaaaaaaaagatGCATGGATTAGCGCCTATGTCGACTGACTATCTGCAGCCAAGTTATGATCAGCTGCGCATTGAGCTGTACCAGGGCTCAGTCACACAAGAAGACGCCCGTCTCAGAGGATTTGATCTGGTGACCAGTATAgagctCATAGAGCACCTCACTCTGGCTGACGTGGAGCGCTTCTCTGAGGTGGTGTTTGGTTACATGACCCCAGTGGCTGTTATCGTCAGTACTCCAAACTCTGAGTTCAACCCCCTTTTCCCTCGACCGGCAGGTTTCAGGCACAGTGATCACAAGTTTGAGTGGACCAGAGCAGAGTTCAAGTCCTgGGCTCTGAAGGTGTGTTTGGAGTACGGTTATGAGGTGGAGTTCACTGGTGTTGGACAGGCGCCACGCGGCCAGCAGGAGAGAGTCGGCTTCTGCTCTCAGATTGGTGTGTTCCGCTGGCTCGGGGGGAGACAGCACTGCAACATGTTGTTTGGTGATGATGCTGAGGATGTGTTTTCATACACACTGCTCTATAGTATAAACTACCCCAGCCTGCATGACAATAACATCTTGCAGAGGGTCCTGGTGAGTGAGGTGTTGTACTGGGCAGAAAAGCTGAAGAGAAACTGGATAGAGGAGAAGACTGGTGAGAGGGATGACACTTCCACATTGTGTCCGGCTGAGGGTGAAGGGGAGGAATGCCTCAGAACGTCGGAGCGACACATGgagatggaagacagacagacagCAGAATGTGGAGCAGAGACGAAAAATCCGGGGGAGCGTCAGGAATCAGAGCTGTTTTGGACAAATGGCAAAGGACAACAGGAGTCCTGCAAATTGCGCAGgtgtgtgtctgtacctCTGGCTGTGCTTTGGTCCTGCTGCCCAAAACTCAGTGTCCTGAGTGGAAGTCTCAGTAATCTCAGACATGTCCTGATGGATAACCCCGAAGTTAAACTGAGCCAGGACGGCTCTGCTGTGCTCCTAAATGACCAGGAACGAGaccttgaagaggaagaagaggatcGTGATGATTTGGAGGACAGCGGGTATGCAGTATGCTCCCACAGTGCTGAGCCAGAGGAAGACTGGGAGAGAAATGTTTGATCTGGAAGGTGCAGCTTTGTTGTTGAGCGAGCAAACGGTTTTCCTTGGTTACTACTGGGCAGTGCAGTTGTAGCAACAGTTCCCAACTGCACTGTAGAAACTGGCTTTTGGATTTATTAGATGGTTTATTTTGACTGCATCTTTGTGTTGTAGGCGACAATAAAGCTCTAAATGTGAGAAAAGG
>XM_039811027.1
TCTTCGTTGTCCAAAAAAacgaataaaataaaaatactgcgTCAACACTAAATAATAACAGCGCCCTCTGGGGTCCGACGAGGACGGTAGCTGGACGCGAAAATGGATCCAATCTTCAGTCCTCCActtcacagacagagacatcagTTTGTCATAGATTTTGTCAAGAGGAACAAACCCAAAAAGGTGGTGGACTTGGGCTGCAGTGAGTGCAGCCTTCTTCAAAAACTGAAGTTTCACCGTGAAATTGAACTACTGGTTGGAGTGGACATCGATGGtgccaatataaaaaaaaagatGCATGGATTAGCGCCTATGTCGACTGACTATCTGCAGCCAAGTTATGATCAGCTGCGCATTGAGCTGTACCAGGGCTCAGTCACACAAGAAGACGCCCGTCTCAGAGGATTTGATCTGGTGACCAGTATAgagctCATAGAGCACCTCACTCTGGCTGACGTGGAGCGCTTCTCTGAGGTGGTGTTTGGTTACATGACCCCAGTGGCTGTTATCGTCAGTACTCCAAACTCTGAGTTCAACCCCCTTTTCCCTCGACCGGCAGGTTTCAGGCACAGTGATCACAAGTTTGAGTGGACCAGAGCAGAGTTCAAGTCCTgGGCTCTGAAGGTGTGTTTGGAGTACGGTTATGAGGTGGAGTTCACTGGTGTTGGACAGGCGCCACGCGGCCAGCAGGAGAGAGTCGGCTTCTGCTCTCAGATTGGTGTGTTCCGCTGGCTCGGGGGGAGACAGCACTGCAACATGTTGTTTGGTGATGATGCTGAGGATGTGTTTTCATACACACTGCTCTATAGTATAAACTACCCCAGCCTGCATGACAATAACATCTTGCAGAGGGTCCTGGTGAGTGAGGTGTTGTACTGGGCAGAAAAGCTGAAGAGAAACTGGATAGAGGAGAAGACTGGTGAGAGGGATGACACTTCCACATTGTGTCCGGCTGAGGGTGAAGGGGAGGAATGCCTCAGAACGTCGGAGCGACACATGgagatggaagacagacagacagAATGTGGAGCAGAGACGAAAAATCCGGGGGAGCGTCAGGAATCAGAGCTGTTTTGGACAAATGGCAAAGGACAACAGGAGTCCTGCAAATTGCGCAGgtgtgtgtctgtacctCTGGCTGTGCTTTGGTCCTGCTGCCCAAAACTCAGTGTCCTGAGTGGAAGTCTCAGTAATCTCAGACATGTCCTGATGGATAACCCCGAAGTTAAACTGAGCCAGGACGGCTCTGCTGTGCTCCTAAATGACCAGGAACGAGaccttgaagaggaagaagaggatcGTGATGATTTGGAGGACAGCGGGTATGCAGTATGCTCCCACAGTGCTGAGCCAGAGGAAGACTGGGAGAGAAATGTTTGATCTGGAAGGTGCAGCTTTGTTGTTGAGCGAGCAAACGGTTTTCCTTGGTTACTACTGGGCAGTGCAGTTGTAGCAACAGTTCCCAACTGCACTGTAGAAACTGGCTTTTGGATTTATTAGATGGTTTATTTTGACTGCATCTTTGTGTTGTAGGCGACAATAAAGCTCTAAATGTGAGAAAAGG
>XM_039811028.1
AAACACACTTTAGCTTCCAAACCAATGTTTGTTTGAGCATGTATGCTAACGATAATTCACAAGCTAACGGAATCGTCGCAGCTAAAGGTTTTACCGAACCAATAAGGTCGTAGAGCTAACGTTAGGTGGTGGACTTGGGCTGCAGTGAGTGCAGCCTTCTTCAAAAACTGAAGTTTCACCGTGAAATTGAACTACTGGTTGGAGTGGACATCGATGGtgccaatataaaaaaaaagatGCATGGATTAGCGCCTATGTCGACTGACTATCTGCAGCCAAGTTATGATCAGCTGCGCATTGAGCTGTACCAGGGCTCAGTCACACAAGAAGACGCCCGTCTCAGAGGATTTGATCTGGTGACCAGTATAgagctCATAGAGCACCTCACTCTGGCTGACGTGGAGCGCTTCTCTGAGGTGGTGTTTGGTTACATGACCCCAGTGGCTGTTATCGTCAGTACTCCAAACTCTGAGTTCAACCCCCTTTTCCCTCGACCGGCAGGTTTCAGGCACAGTGATCACAAGTTTGAGTGGACCAGAGCAGAGTTCAAGTCCTgGGCTCTGAAGGTGTGTTTGGAGTACGGTTATGAGGTGGAGTTCACTGGTGTTGGACAGGCGCCACGCGGCCAGCAGGAGAGAGTCGGCTTCTGCTCTCAGATTGGTGTGTTCCGCTGGCTCGGGGGGAGACAGCACTGCAACATGTTGTTTGGTGATGATGCTGAGGATGTGTTTTCATACACACTGCTCTATAGTATAAACTACCCCAGCCTGCATGACAATAACATCTTGCAGAGGGTCCTGGTGAGTGAGGTGTTGTACTGGGCAGAAAAGCTGAAGAGAAACTGGATAGAGGAGAAGACTGGTGAGAGGGATGACACTTCCACATTGTGTCCGGCTGAGGGTGAAGGGGAGGAATGCCTCAGAACGTCGGAGCGACACATGgagatggaagacagacagacagCAGAATGTGGAGCAGAGACGAAAAATCCGGGGGAGCGTCAGGAATCAGAGCTGTTTTGGACAAATGGCAAAGGACAACAGGAGTCCTGCAAATTGCGCAGgtgtgtgtctgtacctCTGGCTGTGCTTTGGTCCTGCTGCCCAAAACTCAGTGTCCTGAGTGGAAGTCTCAGTAATCTCAGACATGTCCTGATGGATAACCCCGAAGTTAAACTGAGCCAGGACGGCTCTGCTGTGCTCCTAAATGACCAGGAACGAGaccttgaagaggaagaagaggatcGTGATGATTTGGAGGACAGCGGGTATGCAGTATGCTCCCACAGTGCTGAGCCAGAGGAAGACTGGGAGAGAAATGTTTGATCTGGAAGGTGCAGCTTTGTTGTTGAGCGAGCAAACGGTTTTCCTTGGTTACTACTGGGCAGTGCAGTTGTAGCAACAGTTCCCAACTGCACTGTAGAAACTGGCTTTTGGATTTATTAGATGGTTTATTTTGACTGCATCTTTGTGTTGTAGGCGACAATAAAGCTCTAAATGTGAGAAAAGG

Function

NR:

description
small RNA 2'-O-methyltransferase

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K20798 HENMT1; small RNA 2'-O-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811026.1 True 1570 mRNA 0.49 9 10617375 10627039
XM_039811027.1 False 1567 mRNA 0.49 9 10617375 10627039
XM_039811028.1 False 1509 mRNA 0.49 9 10617581 10627039

Neighbor

gene id symbol gene type direction distance location
LOC120565623 NA coding upstream 8149 10592837 ~ 10609226 (+)
LOC120565703 NA coding upstream 63523 10543708 ~ 10553852 (+)
zmat3 zmat3 coding upstream 114309 10493529 ~ 10503066 (+)
kng1 NA coding upstream 166393 10440558 ~ 10450982 (+)
sox2 sox2 coding upstream 502053 10112982 ~ 10115322 (+)
slc25a24 slc25a24,LOC104951356,LOC104935995 coding downstream 26600 10653639 ~ 10668886 (+)
LOC120565966 LOC101466472,LOC102777579,LOC108238401,LOC101066382,LOC106527066 coding downstream 54500 10681539 ~ 10691086 (+)
tm4sf18 LOC100702951,LOC102305373,LOC101466751,LOC102228636,LOC103155263,LOC104936000,LOC103374892,LOC105936905 coding downstream 68984 10696023 ~ 10714882 (+)
LOC120566058 LOC103374891,LOC102305063,LOC100702684,LOC101467020 coding downstream 95863 10722902 ~ 10733961 (+)
LOC120566056 LOC103374891,LOC100702684,LOC101467020,LOC102305063 coding downstream 121890 10748929 ~ 10759929 (+)
G94515 NA non-coding upstream 85994 10530696 ~ 10531381 (+)
G94450 NA non-coding upstream 107837 10507652 ~ 10509538 (+)
G94426 NA non-coding upstream 212142 10339236 ~ 10405233 (+)
G94427 NA non-coding upstream 258587 10346197 ~ 10358788 (+)
LOC120565491 NA non-coding upstream 320117 10204140 ~ 10297258 (+)
G94587 NA non-coding downstream 84164 10711203 ~ 10711496 (+)
G94604 NA non-coding downstream 321464 10948503 ~ 10948822 (+)
G94609 NA non-coding downstream 336509 10963548 ~ 10977065 (+)
G94613 NA non-coding downstream 369438 10996477 ~ 10997201 (+)
G94674 NA non-coding downstream 474289 11101328 ~ 11101569 (+)
atp11b atp11b other upstream 202549 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 457494 9985719 ~ 10159881 (+)
ttc14 ttc14 other upstream 669138 9933613 ~ 9948237 (+)
G94376 NA other upstream 714186 9902285 ~ 9903189 (+)
LOC120565620 NA other upstream 771100 9844271 ~ 9846275 (+)
G94598 NA other downstream 289886 10916925 ~ 10941244 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other downstream 319893 10946932 ~ 10948316 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other downstream 732651 11359690 ~ 11458146 (+)
znhit6 znhit6,LOC102790327 other downstream 1162096 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 1534599 12161638 ~ 12443080 (+)

Expression


Co-expression Network