ppat (ppat)


Basic Information

Item Value
gene id ppat
gene name ppat
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38198996 ~ 38209487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811036.1
ATCCACTGAACTAAACTGCATCCAATTTTCTCTTGACGAGACGATTGATTTATCAAAATGTAATCAAGAGCAAACAATTGGCCGCTCGACCGTATCGATTAATCAGATTTCGATAAGTTGTTGTCCTCGTAAAAAATACCACGTGTTTCGCCAGTTCAATAAGTTTGATAAGAAATGCTTTCTGATTATGTCATATCAGTTATAGTGGCCTGTTGCGTTTGTTAAAGCTGCGCTCAGTGATGCTTTTTATGTCGCAGCTTTGTTTTTCCGACTCGTGATTTCGAGGCCACTTGTACAATGTCAGCTGAGTTTATGTTGTCTTAACGAGCCACGTTGTAGTGACCGCCTGCAGCCATATCAACGCTCTCTGCACGTGCTCGGTCAATACTTTCGGAGCGCGTATAGGTAAGCACGAGCACGATTGCCCAGGCAACCACCGGGCACGAGACCGTCAACCGGGGTTAACCGAGGACAGAGACCCACGGCGGCTGGATGGAGTTTGAGGCGTCCGGTATCGGGGAGGAGTGCGGTGTTTTCGGGTGTGTGGCCGCCGGAGAGTGGCCCACACAGCTGGAGGTGGCTCAGGTCTTAACTCTGGGACTTACGGCGTTACAACACCGGGGTCAGGAAAGTGCTGGGATTGTCACAAGTAATGGAGCCAGTCCACCCACGTACACAGCCCACAAGggaatGGGATTAGTGAGCAGTGCTTTCCCACCTGATGCTCTTCTGAAGCTGCGCTATGGTAACCTCGGTATTTGTCACACACGCTATTCAACTACTGGGATCTCAGAGCTGCAGAACTGCCAGCCCTTTGTGGTGGATACACTGCATGGCAAGATTGCCGTAGCACACAATGGAGAGCTGATTAATGCGCATGCCCTGCGGAAAAAAGTAATGCGCCATGGTGTGGGCCTCTCCACCAGCTCAGACAGCGAGCTCATCACCCAACTGCTGGCATTGACTCCACCTATGGAGGAGCAGGACGCACCAGACTGGGTTGCCAGGATTAAAAATCTGATGACTGAGACCCCTACATCGTACTCCCTGTTGGTGATGTTCAAAGATGTTATCTATGCGGTGCGTGACCCATACGGAAATCGACCTCTCTGCATCGGACGGGTCGTTCCTGTCTCTAAACTGCACAGTTCAGGTGCCGAAGAGGAGGACACTGAGGGGTGGGTTGTGTCGTCCGAGTCCTGCAGCTTCCAGTCCATCGGTGCCAAGTATTACAGAGAGGTCTTACCAGGAGAGATAGTCCAGATATCCAACCACGGGGTCAAGTCTCTAAGTGTTGTCCCTCGCCCTGAAGGAGACCTCCCTGCCTTCTGCATATTTGAATATGTGTACTTTGCCAGACCGGACTCTATTTTTGAAGGTCAGATGGTCTACACCGTCAGGCAGCGCTGTGGTCGGCAGTTAGCCATCGAGGCTCCAACAGACGCAGACGTGGTCAGCACTGTGCCAGAGTCTGCGACTCCTGCTGCACTGGGCTACGCTCAGCAGTCTGGGCtgccatatatagaggttctgTGTAAGAACCGCTACGTCGGGAGAACATTTATTCAACCAAATACCCGGCTGAGACAGCTAGGAGTTGCCAAGAAATTTGGGGCTCTGACAGACAACTTTGCTGGGAAACGAGTGGTGCTGGTAGATGACTCCATCGTCCGAGGCAACACCATCTCCCCCATTATAAAACTGCTGAAGGACGCCGGTGCAACGGAGGTCCACATCAGGGTGGCCTCTCCACCCATCAGACACCCTTGCTACATGGGCATTAATATTCCCACCAAGGAGGAGCTCATCGCCAACAAGCCAGAGTTTCAGGACATTGCTGGATACATTGGTGCCGCCAGTGTTCAGTATCTGACTGTGGAGGGCCTGGTATCAGCCGTTCAGGAGGGAATCTCCTCCCTCCAGCAGAAGGACAAGATCAGCTCCAATAACAAGTCCAGCAAGCGAGTGGGCCACTGCACTGCCTGTCTGACTGGGAAGTACCCAGTGGAGCTGGAGTGGTAACGCCATGACTGACCAGAGTTAGAGCAGCAGCACTGTGGGTTTACTGCAAGCGCCTGCATGTGAATGTAATGTTCTCTGTAGACTAGAAAACAGGCTGGGCATTTGTATACTGCTATCTGGGACACTAAATACACGCAGTAGTTTCACATTTCAAGCCTTAACAAGACAGGAGTGTCAAATAGAATGTACTATGTCAGAAAAGCGCACAAGGCCCGTGACCAAAATGTTAAATTGTCTTTATTTTCCTTGTCACGTTTACTTTTCTACCTTTTACCTTAAATGAAACATTATGCTCTTTTGTTTTGGGTCTGACTGTtgcatattttgtttttctaacTTTAAATCTTGCATGAAATATAATGGAAAAGAAATGATAAACATTAACTATAATAAACAATATCTACAATGACAA
>XM_039811037.1
TTTATCCACTGAACTAAACTGCATCCAATTTTCTCTTGACGAGACGATTGATTTATCAAAATGTAATCAAGAGCAAACAATTGGCCGCTCGACCGTATCGATTAATCAGATTTCGATAAGTTGTTGTCCTCGTAAAAAATACCACGTGTTTCGCCAGTTCAATAAGTTTGATAAGAAATGCTTTCTGATTATGTCATATCAGTTATAGTGGCCTGTTGCGTTTGTTAAAGCTGCGCTCAGTGATGCTTTTTATGTCGCAGCTTTGTTTTTCCGACTCGTGATTTCGAGGCCACTTGTACAATGTCAGCTGAGTTTATGTTGTCTTAACGAGCCACGTTGTAGTGACCGCCTGCAGCCATATCAACGCTCTCTGCACGTGCTCGGTCAATACTTTCGGAGCGCGTATAGGTAAGCACGAGCACGATTGCCCAGGCAACCACCGGGCACGAGACCGTCAACCGGGGTTAACCGAGGACAGAGACCCACGGCGGCTGGATGGAGTTTGAGGCGTCCGGTATCGGGGAGGAGTGCGGTGTTTTCGGGTGTGTGGCCGCCGGAGAGTGGCCCACACAGCTGGAGGTGGCTCAGGTCTTAACTCTGGGACTTACGGCGTTACAACACCGGGGTCAGGAAAGTGCTGGGATTGTCACAAGTAATGGAGCCAGTCCACCCACGTACACAGCCCACAAGggaatGGGATTAGTGAGCAGTGCTTTCCCACCTGATGCTCTTCTGAAGCTGCGCTATGGTAACCTCGGTATTTGTCACACACGCTATTCAACTACTGGGATCTCAGAGCTGCAGAACTGCCAGCCCTTTGTGGTGGATACACTGCATGGCAAGATTGCCGTAGCACACAATGGAGAGCTGATTAATGCGCATGCCCTGCGGAAAAAAGTAATGCGCCATGGTGTGGGCCTCTCCACCAGCTCAGACAGCGAGCTCATCACCCAACTGCTGGCATTGACTCCACCTATGGAGGAGCAGGACGCACCAGACTGGGTTGCCAGGATTAAAAATCTGATGACTGAGACCCCTACATCGTACTCCCTGTTGGTGATGTTCAAAGATGTTATCTATGCGGTGCGTGACCCATACGGAAATCGACCTCTCTGCATCGGACGGGTCGTTCCTGTCTCTAAACTGCACAGTTCAGAGGAGGACACTGAGGGGTGGGTTGTGTCGTCCGAGTCCTGCAGCTTCCAGTCCATCGGTGCCAAGTATTACAGAGAGGTCTTACCAGGAGAGATAGTCCAGATATCCAACCACGGGGTCAAGTCTCTAAGTGTTGTCCCTCGCCCTGAAGGAGACCTCCCTGCCTTCTGCATATTTGAATATGTGTACTTTGCCAGACCGGACTCTATTTTTGAAGGTCAGATGGTCTACACCGTCAGGCAGCGCTGTGGTCGGCAGTTAGCCATCGAGGCTCCAACAGACGCAGACGTGGTCAGCACTGTGCCAGAGTCTGCGACTCCTGCTGCACTGGGCTACGCTCAGCAGTCTGGGCtgccatatatagaggttctgTGTAAGAACCGCTACGTCGGGAGAACATTTATTCAACCAAATACCCGGCTGAGACAGCTAGGAGTTGCCAAGAAATTTGGGGCTCTGACAGACAACTTTGCTGGGAAACGAGTGGTGCTGGTAGATGACTCCATCGTCCGAGGCAACACCATCTCCCCCATTATAAAACTGCTGAAGGACGCCGGTGCAACGGAGGTCCACATCAGGGTGGCCTCTCCACCCATCAGACACCCTTGCTACATGGGCATTAATATTCCCACCAAGGAGGAGCTCATCGCCAACAAGCCAGAGTTTCAGGACATTGCTGGATACATTGGTGCCGCCAGTGTTCAGTATCTGACTGTGGAGGGCCTGGTATCAGCCGTTCAGGAGGGAATCTCCTCCCTCCAGCAGAAGGACAAGATCAGCTCCAATAACAAGTCCAGCAAGCGAGTGGGCCACTGCACTGCCTGTCTGACTGGGAAGTACCCAGTGGAGCTGGAGTGGTAACGCCATGACTGACCAGAGTTAGAGCAGCAGCACTGTGGGTTTACTGCAAGCGCCTGCATGTGAATGTAATGTTCTCTGTAGACTAGAAAACAGGCTGGGCATTTGTATACTGCTATCTGGGACACTAAATACACGCAGTAGTTTCACATTTCAAGCCTTAACAAGACAGGAGTGTCAAATAGAATGTACTATGTCAGAAAAGCGCACAAGGCCCGTGACCAAAATGTTAAATTGTCTTTATTTTCCTTGTCACGTTTACTTTTCTACCTTTTACCTTAAATGAAACATTATGCTCTTTTGTTTTGGGTCTGACTGTtgcatattttgtttttctaacTTTAAATCTTGCATGAAATATAATGGAAAAGAAATGATAAACATTAACTATAATAAACAATATCTACAATGACAA

Function

symbol description
ppat Predicted to enable amidophosphoribosyltransferase activity. Predicted to be involved in purine nucleotide biosynthetic process. Predicted to act upstream of or within nucleoside metabolic process and purine nucleobase biosynthetic process. Is expressed in several structures, including alar plate midbrain region; digestive system; nervous system; pectoral fin bud; and segmental plate. Orthologous to human PPAT (phosphoribosyl pyrophosphate amidotransferase).

NR:

description
amidophosphoribosyltransferase isoform X1

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0004044 amidophosphoribosyltransferase activity molecular_function

KEGG:

id description
K00764 purF, PPAT; amidophosphoribosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811036.1 True 2434 mRNA 0.49 11 38198999 38209487
XM_039811037.1 False 2428 mRNA 0.49 11 38198996 38209487

Neighbor

gene id symbol gene type direction distance location
LOC120564983 LOC100690982,LOC103357424,LOC102799593,LOC101477196,LOC104919101 coding upstream 10310 38179031 ~ 38188686 (+)
nrl LOC104947091,LOC103357430,LOC105353878 coding upstream 20633 38168461 ~ 38178363 (+)
LOC120565755 LOC103357426,LOC102194044,LOC102293839,LOC102798827 coding upstream 62816 38093026 ~ 38136180 (+)
impact hrh4,impact,LOC100712525,LOC102292561,LOC101478323,LOC102218847,LOC105928845,LOC103137092,LOC103376683 coding upstream 208720 37951158 ~ 37990276 (+)
LOC120565667 hrh4,LOC104967234,LOC100712525,LOC102292561,LOC101478323 coding upstream 214254 37983334 ~ 37984742 (+)
aasdh NA coding downstream 8328 38217815 ~ 38235264 (+)
chst14 chst14 coding downstream 51038 38260525 ~ 38263359 (+)
nmu NA coding downstream 98387 38307874 ~ 38314350 (+)
clocka clock,LOC102778122 coding downstream 108446 38317933 ~ 38344663 (+)
kdr kdr coding downstream 169729 38379216 ~ 38410217 (+)
G101081 NA non-coding upstream 136324 38057588 ~ 38062672 (+)
G101080 NA non-coding upstream 152173 38046044 ~ 38046823 (+)
LOC120565003 NA non-coding upstream 183722 38013189 ~ 38015274 (+)
G101066 LOC108281047 non-coding upstream 200293 37998455 ~ 37998703 (+)
G100978 NA non-coding upstream 225805 37956604 ~ 37973191 (+)
LOC120565354 NA non-coding downstream 38041 38247528 ~ 38248312 (+)
G101208 NA non-coding downstream 159210 38368697 ~ 38370401 (+)
G101211 NA non-coding downstream 163077 38372564 ~ 38372975 (+)
G101232 kit non-coding downstream 251187 38460674 ~ 38463579 (+)
G101245 pdgfra non-coding downstream 304885 38514372 ~ 38514831 (+)
G100843 NA other upstream 708924 37463914 ~ 37490072 (+)
prrc2c NA other upstream 1240636 36932655 ~ 36958360 (+)
G100671 NA other upstream 1500127 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 1587250 36596041 ~ 36611746 (+)
smim24 NA other upstream 1664414 36495484 ~ 36534582 (+)
usp46 usp46 other downstream 656948 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 1114097 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 1244633 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 1351574 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 1484425 39693912 ~ 39740277 (+)

Expression


Co-expression Network