spata1 (spata1,LOC102789799)


Basic Information

Item Value
gene id spata1
gene name spata1,LOC102789799
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20598582 ~ 20605337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811109.1
ATGCTCTAAATTCAGAGCAATGAAAGGGAAATGTGTAGATTTCACGTTTGTTTGTGCTTTGGTTAATTTATTTGCCAAAAGTTGTCTTATAGTGTACTTCAGTTTTGTTATGATTGTCGACGTAATTCATATTGTCTGGTCGCTCTAAACCTCACATCAAAAACACGACTAggctttgaaaaaaaagaaaagaaaaaaagagaattctCGTCAATCTTACATTTACGACAACTTCCAGTGTACGCGAAAGCAGCATCAATAGATCAATAGAAATTGCGGCCTATAGTGGCGATAAAGTATTATCACACTCAGACAAAATATCCAGATATTCAAGAAGAACTTGAGAAATCTCTCGACATAAAAGCCTGAATGTTATCAATATAATGTGACTTTTCTAAAATTATTTAGTATGCAGAAGTTATGTAAGTAGGCTAGTCAACAATATAACGTAAAATAGGATCACATGTTGCCTTGGCTACTAAAACTATAAAGGCTTAACATAGGCTGATTCCCTAAATTCATATTATACTTCAACGCAATAATAGTGTGATATAAATCAAACACTTCATTCCAACATTTAACCTtcggaaaaaaaactgtacatgCTGCCTGCCGATGAAACCTGTAGGACTGGTGACCACAGATTGGATTAGCAGATATTTTTTCTGCAGCAGTTGTCATCACCAGCACCAGAGCAACCACCGCTGGCACTCTCATAAAAGAAGCTCCACTGGGCTACTGTGTTGGATTGCGCCAGATTGTCACTGAGCAGTCCGCGACGTCGCAGCAAAAAAAGCAATTAAGGCTCCCTGCGATAAAGCTGACGGAAATCTAACGGTTTCTCTGCTTCTCCTTGCTGAGCTGCGCTGATAATGGAGCTGTCCTGTGAGTCCGTGAGGTATCCTGAGGACAGAAGACCGGCCAGTTGCAAGttcGTGGAGCTCCATGTGCTGTATGTGCCAGATGACCAGTGGAATATGAAGCTTAATAAAGTCCCTGCTGAAGCCATAGAGAACTTCATATCTGCCGGCTTTATCAGGGTTTATCCTGACATCACCTTGAAAACTCTGAGAAGCGAGCTGGGAGCTCTTCTTGGTGCTGAGAGGAGCATCAACAAATTCTCCTTCCTGAAATGTGTGGGGCGCAGTTTGGCACTGGTCAAGAGCACACAGGAGAGGGATCTGAAAGTGAAAACCTTTGCTCCACCGTATGCCCCACAGCCAGAGCTTTACCTGCTGCCCACTGTGGAGAATGACAGCAGTGTTTGCTCCCAGTCTCTCAGCCCAGACACCAGCAGCAGCTCTCCAGACCACCAGACCTATTACCAACCTCCCAAGACGTGCAGCCTGTCAGCAGGAACAAAGGAGCCTGTTAAATTCCCCCTTATCCCCCAGTGTTCCCATCAGCCACCTCCCACCCCCAGCcttgaagaggaggaggaagatgaggagcaGAGCTATAATTCTTCAGAGGCAGAAGCAGAAAATGAAGAGGAGAATATCTCTTCCAACAAGTTAGAGTGGGCAGAGCAGGAATGTTGCCCAAGGAAGCCTCTGAATCAAAGGGCCCCACAGCCAGTTTCACGGAATAAAGGGTGTGAAGCTGATTCAGCTCAGGTGAAGGAGTcgccagaaaaaaaagaaacctgcaGAAAGAAGAAACAGTACCACAGACAGAACAGAGCGGCCAGAGATTTAGGAGTCGCCCAGTCTCTGGAGGACAGAGATTCAGGCTTCTCCCTCACAGATGGGCTCGGGAAACCAAAAGATGTACATGCACTGAAGTCCATCAGGAATAAACCAACAAGTGGAGTGACAGAAAGACCAGCTGTGTTGTCTCGGTCTGTTGGGCTTACCTCCCCTCCTTCAGGACTAGACTTGGCCGTGGTCACTCAAAAAACGACTGCCTCTCCTGTCTTTCACACAAACAGAGAGGAACTGATCGAGGAAATCAAGCTGGTGAGGGACGAGAGAAAGCAGCTGGAGTGGACAAGGCAAGAGTTGCTAAGAAAGGGGAAAGATTTGTTGGCTCAAAATCGACACCGCAGGAACCAAGCACGTGACAGCTGGAAGAAGAAATACTTTGAAACCAAGAAAGCCACAGCACCACTGGAGGAAAATCTGAGAAACTTACGACAGGAGTTGGAGACATTTTACAACAAACTGTTGCACCAGCTCCAGGCCAGAGACAACAGAGGGAAGCCAAGACGACAGGGCAGATCTTCCATAAAGAATGAGCTCATCATTCAGATCATGACAGAGAGCCATGAGATTGACAACCTGAAGAGGAAGGTAGAGGATGCCAAGATGAAGCTGGTAACAGAGATAAAGTTGAGAAAGCAGGCTGCCACAGAGCTGAGGGCCCTGAAGGCTGAGCTGGCCCAGAAGAAGAGCCAGTCCTCTCATCCTGGTCCCACATCCTCTCTGTGTTTTGGAAATACCACACGGGACAGACCGCAAATTCAAAGCACCTCAATCTAATTCAGTACATACAGAACTGAATAAAACCTTTGCTGGGACAGCA

Function

symbol description
spata1 Orthologous to human SPATA1 (spermatogenesis associated 1).

NR:

description
spermatogenesis-associated protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811109.1 True 2523 mRNA 0.46 12 20598582 20605337

Neighbor

gene id symbol gene type direction distance location
rpf1 rpf1 coding upstream 3143 20588298 ~ 20595439 (+)
LOC120565357 NA coding upstream 10967 20582506 ~ 20587615 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding upstream 16318 20576523 ~ 20582264 (+)
samd13 samd13,LOC103130842 coding upstream 30470 20564975 ~ 20568112 (+)
adgrl2a adgrl2,LOC106923620 coding upstream 341988 20156410 ~ 20256594 (+)
vtg2 NA coding downstream 15258 20620595 ~ 20630337 (+)
LOC120565169 NA coding downstream 47611 20652948 ~ 20662698 (+)
LOC120565171 LOC104931934 coding downstream 63999 20669336 ~ 20671151 (+)
mfn1b mfn1 coding downstream 151450 20756787 ~ 20774813 (+)
actl6a actl6a coding downstream 204846 20810183 ~ 20816886 (+)
G96692 NA non-coding upstream 112696 20474807 ~ 20485886 (+)
LOC120565515 NA non-coding upstream 127835 20468553 ~ 20470747 (+)
LOC120565226 NA non-coding upstream 309201 20266651 ~ 20289381 (+)
G96653 NA non-coding upstream 549365 20047879 ~ 20049217 (+)
LOC120565691 NA non-coding upstream 551210 20047018 ~ 20047372 (+)
G96742 NA non-coding downstream 9595 20614932 ~ 20615202 (+)
G96753 NA non-coding downstream 66329 20671666 ~ 20674195 (+)
G96754 ssx2ip non-coding downstream 68920 20674257 ~ 20676737 (+)
G96758 NA non-coding downstream 96102 20701439 ~ 20701938 (+)
G96775 NA non-coding downstream 137730 20743067 ~ 20743775 (+)
prkacba prkacb other upstream 33758 20548999 ~ 20564824 (+)
G96513 NA other upstream 1066905 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 1812946 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 1933469 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 2739171 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 805999 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 949557 21554894 ~ 21557731 (+)
G97093 NA other downstream 1085560 21690897 ~ 21782000 (+)
G97321 NA other downstream 1678309 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1880174 22485511 ~ 22491235 (+)

Expression


Co-expression Network