rpf1 (rpf1)


Basic Information

Item Value
gene id rpf1
gene name rpf1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20588298 ~ 20595439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811116.1
CCACCACAGTCATTTCCGGTCCCCGGTCGTGAGCACACGAACAGGAAGTCAGCTACTGTCTATGCTCCACACGTGAAATATTTTAGCCAAAACAGACGGCTGACACTAGATGGATATCACGGAGGTTCCCGTGAGTCAGGACAACAAAGgtaagaaaaagaagaataagAAGGCAAAAAAGAAGAGTGTGAGTCAGGAGGGAAATGGAGAAAGCGTCGGAGTTGAGACGAAggaggagaagatggagaaGAGCGAGCCAGCCTTCCCCCCCACCTTCAGTGTGTCCGAAATCAAGAATAAACAGCGAAGACACCTCATGTTCATGAAACTCAAGCAGGAGAAAAGAAAGCAAAAGATGcagataaagaaaaagaagaaaaaagaaagggaagCTTTAGGTGACAAgGCACCGCCTAAAGAGGTCCCAAAGACGATAGAAAACCAGAGGGTGTACGACGAGACAACCGTTGACCCAGAAGACGAAGAGATTGCATTCGACGAGGGAACTGATGAATTTTCTGCCTACTTCAACGGGTTGACAAACCCCAAAGTTCTCATCACAACATCAGACAGACCAAGAGGGaggacggtgaggttttGTGAGCAGCTGGCCACAGTAATCCCAAACGCCCACGTGTACTACAGAAGAGGTTTGGCCCTGAAGAGGATCATTCCTCAGTGCGTCGCCAGGAACTTCACCTACCTCATTGTCATCAACGAGGATCGCAAAGTGCCCAATGGTTTGGTTCTCTGTCATCTCCCTGACGGGCCGACTGCACACTTCAAGATCAGTAGTGTTCGACTACGCAAGGAGATGAAGAGAAGAGGCAAAGATCCAACTGAACACTCCCCAGAGGTGATCCTCAACAACTTCACCACACGCCTGGGACACAGCATCGGCCGGCAGTTCGCTGCCCTCTTTCCACAAGACCCTCAGTTTGTGGGTCGACAGGTCGCCACCTTCCACAACCAGAGAGACTTTGTCTTTTTCAGATTCCACAGGTACATCTTCAAGAATGAGAAGAAAGTTGGTATTCAAGAGCTCGGACCTCGCTTCACCCTCAAACTCCGCTCTCTACAGAAAGGCACATTCGACTCAAAGTTTGGCGAGTATGAGTGGGTCCTGAAGCGCCATGAGATGGATGCCTGCCGACGGAAGTTCCAGCTTTGAATACAAATAACCAGCTTTTTGGTCAGGCAAGGACGACCTTGTTTATTATCGAAGATATTACTGCCATTTGTGGCTTTGCACAAATGGACTTAAAGATTGGATATCCAGATTCTTTGTGCAAACAGTTAACCCTTGTCCTTTCAACTTGTATTTGATGTTCAACACCGATGACCGATTTTAGGAGATCGCATTGCTGTAGATTCACACCTGCCCTGAAAAAGGACTTCTATAAAGCTGCATCTGCAATTCTTTTTTGAAGACCAAGTGTGGGACACGAGCATGTAGCTCATTGCAAGGATGTTTACCCTCTGTTAGTTGGGAGACACCAGGAAGGAGACATGTAATTTTCAGGTTACTGGGATTCATGTGGAGTGCCTCCATCAGACCTGCGAGTGTATGCAAAAGTTGTATTGGCAGATGGCTAGTTTGTAATAAATTAATCTCCACAAACCGTATAAATGTAGCCCCGACATAAATCTGAGTTATTGTCCCATTCTGTCATGAATACAGACATACACCTGTTCATTCCTGGTCTGCAAATGACAAGGAGCGGTGAATTAGTGTCTGGAAAAAGGTAAATGGTTCACATTGCAGCTGCTTTTGTATTTGACAGGCTTTCAAAATAATTATGGATGACTCATTGAACACATTTCTTAATGTAAATActcattttaataaaaacatgttgcaagtttaaaa
>XM_039811117.1
GACCACCACAGTCATTTCCGGTCCCCGGTCGTGAGCACACGAACAGGAAGTCAGCTACTGTCTATGCTCCACACGTGAAATATTTTAGCCAAAACAGACGGCTGACACTAGATGGATATCACGGAGGTTCCCGTGAGTCAGGACAACAAAGgtaagaaaaagaagaataagAAGGCAAAAAAGAAGAGTGTGAGTCAGGAGGGAAATGGAGAAAGCGTCGGAGTTGAGACGAAggaggagaagatggagaaGAGCGAGCCAGCCTTCCCCCCCACCTTCAGTGTGTCCGAAATCAAGAATAAACAGCGAAGACACCTCATGTTCATGAAACTCAAGCAGGAGAAAAGAAAGCAAAAGATGcagataaagaaaaagaagaaaaaagaaagggaagCTTTAGGTGACAAgGCACCGCCTAAAGAGGTCCCAAAGACGATAGAAAACCAGAGGGTGTACGACGAGACAACCGTTGACCCAGAAGACGAAGAGATTGCATTCGACGAGGGAACTGATGAATTTTCTGCCTACTTCAACGGGTTGACAAACCCCAAAGTTCTCATCACAACATCAGACAGACCAAGAGGGaggacggtgaggttttGTGAGCAGCTGGCCACAGTAATCCCAAACGCCCACGTGTACTACAGAAGAGGTTTGGCCCTGAAGAGGATCATTCCTCAGTGCGTCGCCAGGAACTTCACCTACCTCATTGTCATCAACGAGGATCGCAAAGTGCCCAATGGTTTGGTTCTCTGTCATCTCCCTGACGGGCCGACTGCACACTTCAAGATCAGTAGTGTTCGACTACGCAAGGAGATGAAGAGAAGAGGCAAAGATCCAACTGAACACTCCCCAGAGGTGATCCTCAACAACTTCACCACACGCCTGGGACACAGCATCGGCCGGCAGTTCGCTGCCCTCTTTCCACAAGACCCTCAGTTTGTGGGTCGACAGGTCGCCACCTTCCACAACCAGAGAGACTTTGTCTTTTTCAGATTCCACAGGTACATCTTCAAGAATGAGAAGAAAGTTGGTATTCAAGAGCTCGGACCTCGCTTCACCCTCAAACTCCGCTCTCTACAGAAAGGCACATTCGACTCAAAGTTTGGCGAGTATGAGTGGGTCCTGAAGCGCCATGAGATGGATGCCTGCCGACGGAAGTTCCAGCTTTGAATACAAATAACCAGCTTTTTGGTCAGGAGATCGCATTGCTGTAGATTCACACCTGCCCTGAAAAAGGACTTCTATAAAGCTGCATCTGCAATTCTTTTTTGAAGACCAAGTGTGGGACACGAGCATGTAGCTCATTGCAAGGATGTTTACCCTCTGTTAGTTGGGAGACACCAGGAAGGAGACATGTAATTTTCAGGTTACTGGGATTCATGTGGAGTGCCTCCATCAGACCTGCGAGTGTATGCAAAAGTTGTATTGGCAGATGGCTAGTTTGTAATAAATTAATCTCCACAAACCGTATAAATGTAGCCCCGACATAAATCTGAGTTATTGTCCCATTCTGTCATGAATACAGACATACACCTGTTCATTCCTGGTCTGCAAATGACAAGGAGCGGTGAATTAGTGTCTGGAAAAAGGTAAATGGTTCACATTGCAGCTGCTTTTGTATTTGACAGGCTTTCAAAATAATTATGGATGACTCATTGAACACATTTCTTAATGTAAATActcattttaataaaaacatgttgcaagtttaaaa

Function

symbol description
rpf1 Predicted to enable RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human RPF1 (ribosome production factor 1 homolog).

NR:

description
ribosome production factor 1

GO: NA

KEGG:

id description
K14846 RPF1; ribosome production factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811116.1 True 1870 mRNA 0.46 9 20588300 20595439
XM_039811117.1 False 1717 mRNA 0.46 10 20588298 20595439

Neighbor

gene id symbol gene type direction distance location
LOC120565357 NA coding upstream 683 20582506 ~ 20587615 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding upstream 6034 20576523 ~ 20582264 (+)
samd13 samd13,LOC103130842 coding upstream 20186 20564975 ~ 20568112 (+)
adgrl2a adgrl2,LOC106923620 coding upstream 331704 20156410 ~ 20256594 (+)
cth cth coding upstream 1001653 19574855 ~ 19586645 (+)
spata1 spata1,LOC102789799 coding downstream 3143 20598582 ~ 20605337 (+)
vtg2 NA coding downstream 25156 20620595 ~ 20630337 (+)
LOC120565169 NA coding downstream 57509 20652948 ~ 20662698 (+)
LOC120565171 LOC104931934 coding downstream 73897 20669336 ~ 20671151 (+)
mfn1b mfn1 coding downstream 161348 20756787 ~ 20774813 (+)
G96692 NA non-coding upstream 102412 20474807 ~ 20485886 (+)
LOC120565515 NA non-coding upstream 117551 20468553 ~ 20470747 (+)
LOC120565226 NA non-coding upstream 298917 20266651 ~ 20289381 (+)
G96653 NA non-coding upstream 539081 20047879 ~ 20049217 (+)
LOC120565691 NA non-coding upstream 540926 20047018 ~ 20047372 (+)
G96742 NA non-coding downstream 19493 20614932 ~ 20615202 (+)
G96753 NA non-coding downstream 76227 20671666 ~ 20674195 (+)
G96754 ssx2ip non-coding downstream 78818 20674257 ~ 20676737 (+)
G96758 NA non-coding downstream 106000 20701439 ~ 20701938 (+)
G96775 NA non-coding downstream 147628 20743067 ~ 20743775 (+)
prkacba prkacb other upstream 23474 20548999 ~ 20564824 (+)
G96513 NA other upstream 1056621 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 1802662 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 1923185 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 2728887 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 815897 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 959455 21554894 ~ 21557731 (+)
G97093 NA other downstream 1095458 21690897 ~ 21782000 (+)
G97321 NA other downstream 1688207 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1890072 22485511 ~ 22491235 (+)

Expression


Co-expression Network