atf6


Basic Information

Item Value
gene id atf6
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24590326 ~ 24627700 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811159.1
GGCACCCGTAGATTAACGTTAAAGTCAGACGTGTATCTATCGACTGTGAGCGTCAAAAACAGGAAGTTTCCAACCAAGCAGCTGCACCATGAGTTCTAGGAGCCATCGCTTAATCACAACTTGTTTGTCTAAGACAATTTACGAATGAATTTGAAAGAGAATGTCATCCAACTCAACGTTAAACTTTGGAAATCATCAACAATATCCGGTGATGGATAGTGAGACAGGCGTCATGTCTATCGACCATGGAGGAGAGTGGGACATCAGCCTGTTTGATGAGCTGGACAACCTGGGAGATGCAGATGAGCTGCTTCAGGCCCTGGAGCATGCCGGTTATGCCAGTGAGCTGGACTTTGATATCGACATACCGCCGTGGAACGAAGTGGACACAAGCAGCACCTGCACAGATGGTGAGGTGAGCCTGGACTCTCTGTCACCTGCCCACACTCTGAGCTCTGTCCCCTCTCCTACTTCTGTGGAAGCCCTGTCCCCATACTTCTTACAAGATGAGGCCCTGTCTCCACAATCACAATCCTCTTCTGTTTCAGTCTGCTCGGAGTCCAGTGGCTTTTCTCTAATCTCTCCCCCAGCTAAGAAAGCTCCAAAGAGGACCAGCCAGACCGCCCGAGCCAGACAAGCTCAGCCAATCAAAAGGCCGATTCAGATTGGCCCGAGGGTTTCCATCCAACCAAAACCGCTGATTACAGCTGTGCCCCTGGCTCATGCAGCAGCTCCCCTGCAGGCAAAGACAATCATCATCCAGCCCCTGCAGACCACTGTCCTGCCTGTGGTCAAACAAGCACCGATCAACATCCAACCAGCACCCCTTCCAGGACGTACCATAGTGCTGTCGCAGCCAAGCCAGGTGCTACAGATCCAGACAACACGGGCTGTCACTGCCAATGTGGTCACCATGCCAACGCTCAGCCAGGACAGGCGCGTTCCTGTCGCTGCTCCTGTCACGCTTCGAACCCCTTCCTCAGATGATGAATCCAAGTTTGGACAGAGGCAGCAGCGCATGATAAAGAACCGCGAGTCGGCGTCCCTGTCtcggaaaaagaagaaagattaTCTGCTCTCGCTGGAAGCTCGCCTGAAAGTGGCGTTGTCTGAGAATGAGGAGCTCAAGAGTGAGAATGGCACGCTCAAGAAACAGCTAGAGGGCCTGCTGAGTGAGAACACAGTACTAAAGGTAACGGCCCCCAAGAGGAGAGCTGTGTGCCTCATGGTGGTGTTGGTGTTCGTCATGCTTAACGTTGGACCAATGAGTCTGTTTCAGGGTGGCCCAGGCTCCAAGCTCTCCATGCAGCACAGCGGCAGACACCTGTTGGGTTTCTCCTCAGAGGCAGAAACTGAGGTCGTGATGGGCCCCGATCCCCTCGGCGGTGGCCCCTCTGAGATGGCCGACAGCTCTGAGGATAAGGCCCTGATGGTGGTGAAGGATCCTATCTTCCTCCAACCGCCTCCCCCCTGCCAGCCTCCTGTTAACAGGACCAAGTGCATAGAGTTGGCCCATGAGTTGAGGGGCTGGGTCCACCGTCATGAAGTGCAGCAGACCAAATCCAGGCGCATGAGTAACGGCAATCACAAACCCACCAGGACCATTCTGAAAACTGAGAATAAGGAGGCTGACAGTGCCCAGATTGTGACGGTCCAATACACAGAAACTACTGAGGAAAAGAATCCTGGCAGTGAGCTGCAGGTATACTACGCACCTCATCACACCTACAGTGACTTCTTTGATGAGATCAATCGTCGTGGCGACACTTTCTACGTCGTGTCCTTCCGCAGGGATCATCTTCTACTTCCTGCCACCAACCACAACAAAGGAAGTCGACCCAAGATGTCTCTGGTGTTGCCAGCCATGAACATAAACGACAGCATCATAAGGGACAAAGACTACGAGGTAATGATGCAGATTGACTGTGAAGTAACGGACACCAGGATCCTCCACATCAGGTCTTCCACCATCCCACCTTTGCTCCGGGTCAACCGCACAGGCACGTTTTACCAGCACTCATCGACAGACAGCCAGGCTGCGCCTCCTGTCGGTGTGCTAATGGGCTCTGCTTAGGATCATCCAACAGTTATTATGAGAACTCCTTAACTAAACCCAAGAAGACAAACAGAAGATAATACCTCAGTTAACCCTATTTTGGTGTGataaagtatattttaaatCTGGTGAATTCCCACTGACTTGATTTAGTTTTGAATGAAAGGCAAAGGTAGCTCAAATTGTCGGCCACGTTTTTTATTACGACTGATACCCAAGGTAGACTGTAAAAGGGTCCGAGCAGACGCTAGCTCCTTGTGTGGCAAAACTGACTTCTCTCTGTAACCCCAGACGCCCCACATAAGGGTAATTGCTTAACGGCAGGGGGCTGAGCATTGAACCCTGAGTCACCCCGTCATAACACAAATACTTTTACCCCATAGCAGCTCTTCTCATGTCTGCGCTTTCTTTTTGGGTTCTTAATTTTGGGAACGAACTACAAAGCCAGAGGAGAAAACTCAAAGTGAGTATACACCCAAAATTGATCTCACTGGAAAGGCATTTGTGATATTAATGTTTAGAAGTACAACATGTTCTGTGTTTGTATCATAGCTACAGAATGGAGTAGATTTCTTTTACTCATTTGTAGTCGGTTTGCCCCTCTAAAGCACATTGTGAGAACAGTGAAACAGTAAGAGATGCCAGATTAATTACACGCAAGAATAAGGCATTCAGTAAACTCAGGAAGTCAGGGGATCTGTGAAAGCTAGTAGGCTAACCACTATGTTGTTGGCTGGTTTCCATTAATTTAAGGATTTCAGGtgctttgtttttaacattgtattGATGAAGAATTTCAAAGTTTCCTCTGTCTAATCATTATGCGCGCATTgtgggaacttttttttttttgtaatccaCTCCAGAAAACCaaattacatattgtatatGAAATAACAAATGGTGGATTGGAAGGAAACTTACTGTAAATGTTAGAACTAGGAGATTTTTCAATGGGTGGACATCCTGAGATTTTATCTTGATCAAATTTGAAACACCTGCCTTAACCGTTGAGCTAAAACAGCCCATGTTTGACATAAAACCACTGGTGAAAAAAGCAAGTCCTGACTTCTCCGTCCACGGGCTAAATTGCACTTTTATTTTGTGCCGATATTGGTTTAAAACTGTTTGATGGAgttgcattttgcatttttttttttttttttgcactataAATGCAGAACCTGGGAAGATCAGTTCTGGCTTTAAATgcctcatattaatgtttatgtAAAATTGATGCTAAATAAGAAAAGATACATCATCAGAATTAGTACCTTTTTGTATATGTTGATAAAGCAACATACCTTACTTGTCCCTGAAAGTGCATTTCTTTCAGCTACTACGTGATTGTACAGATGGTTGTTTTAGCTCAACCGATGCATAAAAACATGCTCTATACTTGTGTTTTCTTAAGCCAggccgtctgtgtgtgtaattgttttccctctttggtttaaaaaaatatatttggttCACCGCACTGTATTTACTGCATCCCAACAGGACTTAGGTACAACGCAAGAGGACAGTTAAAAACTTGtgaggttttgtttttttgtattttattatgtgCATAAACACTGGATTTTACTATACCTTTTGTGTGTATCCTTTGCGTTGCCACGGGAAATTGTATAACTgcattgttatattttttttctttaacaagtACAATAGATTGACTGACTGTGCtgagtatttttttcttccacaaCTCAATTTACATCCATTAACAGTAAATTACAGGCTTGCACAATAA

Function

NR:

description
cyclic AMP-dependent transcription factor ATF-6 alpha

GO:

id name namespace
GO:0030968 endoplasmic reticulum unfolded protein response biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09054 ATF6A; cyclic AMP-dependent transcription factor ATF-6 alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811159.1 True 3818 mRNA 0.46 16 24590326 24627700

Neighbor

gene id symbol gene type direction distance location
LOC120566076 NA coding upstream 58738 24524473 ~ 24531588 (+)
LOC120565835 NA coding upstream 65968 24520634 ~ 24524358 (+)
sele NA coding upstream 70786 24515434 ~ 24519540 (+)
scyl3 scyl3 coding upstream 101575 24481703 ~ 24488751 (+)
foxd2 LOC104918470,LOC103372816,LOC100707784 coding upstream 301637 24287104 ~ 24288689 (+)
LOC120565979 NA coding downstream 19170 24646870 ~ 24652453 (+)
fyco1a LOC103365712 coding downstream 40682 24668382 ~ 24684071 (+)
ghrhrl ghrhr,LOC102797970 coding downstream 64584 24692284 ~ 24709011 (+)
si:ch211-221n20.8 LOC103365710 coding downstream 82827 24710527 ~ 24722098 (+)
LOC120565988 LOC103367413,LOC108230778 coding downstream 101096 24728796 ~ 24733159 (+)
G97896 LOC104918463,LOC104952282 non-coding upstream 77293 24511971 ~ 24513033 (+)
LOC120565067 NA non-coding upstream 225151 24309609 ~ 24365175 (+)
G97807 sac3d1 non-coding upstream 334245 24254470 ~ 24256081 (+)
G97789 NA non-coding upstream 376467 24211860 ~ 24213859 (+)
G97788 odf3l2,LOC104949085 non-coding upstream 381036 24208229 ~ 24209290 (+)
G97938 NA non-coding downstream 10766 24638466 ~ 24642085 (+)
G98014 LOC106904844,LOC106963772,LOC102314236,LOC103463589,LOC106513892,LOC102207185,LOC100706092 non-coding downstream 157096 24784796 ~ 24785342 (+)
G98015 NA non-coding downstream 159631 24787331 ~ 24787540 (+)
G98019 mknk1 non-coding downstream 205737 24833437 ~ 24835517 (+)
G98021 NA non-coding downstream 209913 24837613 ~ 24875666 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other upstream 382185 24204341 ~ 24208141 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other upstream 939813 23631119 ~ 23650513 (+)
G97596 lpl,LOC108280930,LOC105906969 other upstream 1112508 23474782 ~ 23477818 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other upstream 1209951 23378731 ~ 23380375 (+)
pole4 NA other upstream 1266842 23321464 ~ 23323484 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 121317 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 154218 24781918 ~ 24783881 (+)
elovl1b LOC106963699,LOC101078639 other downstream 224587 24852287 ~ 24873916 (+)
G98194 NA other downstream 905125 25532825 ~ 25547089 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other downstream 1102525 25730225 ~ 25738789 (+)

Expression


Co-expression Network