npl (npl)


Basic Information

Item Value
gene id npl
gene name npl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25601881 ~ 25613413 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811164.1
TTTGCGGCATCACTTGATGCTCAAATGGCTTCACATGACATCAAAGCATCTCTGATTTTTGTCCTAAGAGAGCAAGTTATAACCAGTAGCCCACTTCCCCAAAAACAAAACTCATGTCCACATCGCACAGAAGGAAAAGCACGTACAGGTATATTCAGTCATGACCCCTTCTGCTGATAAAAAGCTGACCGGCCTAATTGCAGCCACTTTTACTCCATTTACCAGAGAAGGTGAAATCAATCTACTCGAGATTGGTCCTTATATTGACTACTTGACAGAGAAGCAAGGTGTTCGTAATATATTTGTGAATGGCACCACTGGAGAGAGCATGTCTCTCAGTGTTGCAGAGAGGAAGATCCTGGCTGAGGAGTGGTGTCAGAAAGCCAAGGGCAAAATGGATCAGGTGATTGTGCACGTCGGCTGCATGTGTCTTAAAGATGCCCAAGAACTGACTCGCCATGCAGCACAGATCAGGGCTGATGCCATAGCAGTTATTGCCCCCTCCTTCTTCAAGCCGAGCAATGCAGACGTGTTGAAGTCATTCCTCCAGGAAGTGGCTTCAGTTGCCCCAACTCTGCCTTTCTATTATTATCATCTTCCAGCTCTCACCGGTGTTAATGtGCCGGCAAGAGATGTGTTGGACGGTATTGAGAAACTCATTCCCTCCTTCAGAGGTGTGAAGTTCAGTGGGAGTGACCTGATGGACTTTGGCCGGTGTGTCAGCTATTGTCAGCCTCACTGGTCAGTCCTCTACGGCGTGGACGAGCAACTGCTTGCAGCTCTGGCCATGGGAAGCCATGGAGCAGTTGGCAGCACATATAACTATGCAGGGTGTCATTTCAACAAGCTCATATCAGCATTTGAGAATGGCGACCTTGTCCAAGCCAGGACAATACAGTTCAAGGTGCAAGAGCTTCTCAGTCATGCCATGAAACTTGGCTTTGACCTGGGAGTGAACAAGCAGCTGATGAATGAGGTGTCAGGCTTGTGTCTCGGGCCCCCCCGACTCCCTGTGATGCTGTGTCCTCCTGATCGCGCTCAGTCCATCGCACGGAAATATCACAGCATTTTCCCTGAATGCTGATGTGTTCATACTGGGTTGTTGAAATCCCTTTATAACTCAACACAGCAGTTCTGACTGAAACATTTAAACTTTGAATCAAACTGTACCTTTTAAATAGGATCTTTTTCCATGAGTCATTCATTATGTTAACAAATATCTTAATCTGTGTTTCACATTtcataaaatgtgaaaataacacTCATAATCAAAGGAATGTGGCGCTGTGTTTGCTACATTTAGGGAACAAGAGGACTGTCACAAATCCCATATCTTATTATCCTGTACTGTGTAAACTGAGTCTCATTGAAGGAGTTTGACCACTTTAAGCCTTGTTTTGTAAATCACGTGGTGGCATTCCATTCatattaattaaaaatgatCACTTTAAAAAAGGGAATGAAAAGCATCAAAGCTTTACTGTGTTTTGTGGTTCAGGTTTGTAGAATGTTTTGCCTCCGTCCACCGCCTCAATTATCACCAGTGAAATGAAAGTTGAACAATTTTCGACCTTGAAAATCAGTTATGGAAAAGTGCTGACTTTAAGCTGATTCCATGAGAGGGATGATAACAGACAGAAGGGGCATTATTATGAACACTGTTTcatgaaaaaataaacactCCAGAAAAAGGTGTATAAAAATCCATGTTGTTAGAAGGGACTTTAAAACACTCACAAATGAGAATCAGCCTTTGAGTAAGAATGTATACCGTCAGTTGTTATTAAATGTGTACTTTGTTTCATATCTTGTGTAATAAAGTATCTGTTTTGTTATAACAGATAATCACTAGTTTTTTACTAATAAATGTTTTGAAATCCA

Function

symbol description
npl Predicted to enable N-acetylneuraminate lyase activity. Acts upstream of or within N-acetylneuraminate catabolic process. Predicted to be located in cytoplasm. Is expressed in several structures, including fin bud; gut; muscle; vein; and yolk syncytial layer. Used to study myopathy. Orthologous to human NPL (N-acetylneuraminate pyruvate lyase).

NR:

description
N-acetylneuraminate lyase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01639 E4.1.3.3, nanA, NPL; N-acetylneuraminate lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811164.1 True 1881 mRNA 0.42 12 25601881 25613413

Neighbor

gene id symbol gene type direction distance location
abhd17ab abhd17a,LOC102787648,LOC100697085,LOC102288803,LOC101468085 coding upstream 125646 25468399 ~ 25476235 (+)
zgc:77486 LOC104918432,LOC103358789,LOC101467589,LOC102787348,LOC100705167 coding upstream 134878 25457253 ~ 25467003 (+)
plin3 plin4 coding upstream 144722 25444399 ~ 25457159 (+)
mpnd mpnd coding upstream 373600 25219482 ~ 25228281 (+)
LOC120565286 LOC103358799 coding upstream 423128 25096838 ~ 25178753 (+)
sec22bb LOC104918424,LOC104948961,LOC100705437,LOC106584381,LOC103354218,LOC106613829 coding downstream 40449 25653862 ~ 25663704 (+)
notch2 LOC104948964,LOC103354216 coding downstream 65123 25678536 ~ 25729476 (+)
rex1bd clg23h19orf60,LOC104918420,LOC103354213,LOC102791516,LOC102205217 coding downstream 135462 25748875 ~ 25755656 (+)
tmem59l tmem59l,LOC104948969 coding downstream 156580 25769993 ~ 25784438 (+)
ssbp4 ssbp4,LOC102228095 coding downstream 227389 25840802 ~ 25937832 (+)
LOC120565050 NA non-coding upstream 80594 25520872 ~ 25521287 (+)
G98188 NA non-coding upstream 86139 25515050 ~ 25515742 (+)
G98186 NA non-coding upstream 89629 25511856 ~ 25512252 (+)
G98177 NA non-coding upstream 122277 25479348 ~ 25479604 (+)
G98176 NA non-coding upstream 122649 25423646 ~ 25479232 (+)
G98280 NA non-coding downstream 125718 25739131 ~ 25740549 (+)
LOC120565749 NA non-coding downstream 172912 25786325 ~ 25837747 (+)
G98312 NA non-coding downstream 271103 25884516 ~ 25925050 (+)
G98363 NA non-coding downstream 521824 26135237 ~ 26136630 (+)
G98384 NA non-coding downstream 578455 26191868 ~ 26194089 (+)
G98194 NA other upstream 54792 25532825 ~ 25547089 (+)
elovl1b LOC106963699,LOC101078639 other upstream 727965 24852287 ~ 24873916 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other upstream 818000 24781918 ~ 24783881 (+)
LOC120565649 LOC103373964,LOC107081966 other upstream 836656 24749017 ~ 24765225 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other upstream 1393740 24204341 ~ 24208141 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other downstream 116812 25730225 ~ 25738789 (+)
dot1l dot1l,LOC102793654 other downstream 378093 25991506 ~ 26019371 (+)
oaz1a oaz1,LOC104950707 other downstream 421338 26034751 ~ 26039866 (+)
zbtb7a zbtb7a other downstream 669639 26283052 ~ 26295382 (+)
LOC120565098 NA other downstream 726130 26339543 ~ 26342293 (+)

Expression


Co-expression Network