LOC120565402 (LOC106958509,LOC103391927,LOC106963510,LOC107690788)


Basic Information

Item Value
gene id LOC120565402
gene name LOC106958509,LOC103391927,LOC106963510,LOC107690788
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4160909 ~ 4161442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811210.1
GATAAAATGTGTTCAAACTTCTCAAAGCCAATCAGAAGGAAGAGTCTTAACTGCCTGCCGTTAGGCCCCGCCCAGCGAGACACAGGCCCCCTGCTCTCTCTTACGTCCGCAGATAAGACGTAAATACAGCCGTTTGAACACCGTCAAGTCATTCGTTTCATCGATCTCAACTGAAAAATGTCTGGAAGAGGAAAAGGCGGGAAGGGACTCGGGAAAGGAGGCGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGCGGCGGAGTGAAGCGTATCTCCGGTCTTATCTACGAGGAGACCCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGACAGGGCCGCACCCTGTACGGCTTCGGAGGCTAAATTACCCGGATCAACGACAACACAacggctcttttaagagccacc

Function

NR:

description
PREDICTED: transcriptional regulatory protein AlgP-like

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0045653 negative regulation of megakaryocyte differentiation biological_process
GO:0000723 telomere maintenance biological_process
GO:0000786 nucleosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11254 H4; histone H4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811210.1 True 534 mRNA 0.55 1 4160909 4161442

Neighbor

gene id symbol gene type direction distance location
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding upstream 9906 4146493 ~ 4151003 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding upstream 18803 4141578 ~ 4142106 (+)
LOC120565394 LOC104935534,LOC103395676,LOC104932847,LOC103395770 coding upstream 28336 4131863 ~ 4132573 (+)
LOC120565880 LOC104960898 coding upstream 306099 3826863 ~ 3854810 (+)
LOC120566051 NA coding upstream 527544 3630184 ~ 3633365 (+)
LOC120565392 LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799 coding downstream 183217 4344659 ~ 4345129 (+)
LOC120565398 LOC108262407,LOC104935308,LOC104932967 coding downstream 204680 4366122 ~ 4366561 (+)
LOC120564977 zgc:110434,LOC102204254,LOC103462478,LOC107386469,LOC101485372,LOC103381127,LOC103379246,LOC103395676 coding downstream 212384 4373826 ~ 4374754 (+)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 247201 4408643 ~ 4419781 (+)
LOC120565669 NA coding downstream 277898 4439340 ~ 4443524 (+)
G93128 NA non-coding upstream 57041 4102854 ~ 4103868 (+)
G92915 NA non-coding upstream 134638 3980907 ~ 4026271 (+)
G92894 NA non-coding upstream 236610 3865706 ~ 3924299 (+)
G92893 NA non-coding upstream 271768 3876213 ~ 3889141 (+)
G92892 NA non-coding upstream 283537 3827312 ~ 3877372 (+)
G93151 NA non-coding downstream 6879 4168321 ~ 4197972 (+)
G93149 NA non-coding downstream 17673 4179115 ~ 4187462 (+)
LOC120565405 NA non-coding downstream 74366 4235808 ~ 4265365 (+)
G93170 NA non-coding downstream 120009 4281451 ~ 4299758 (+)
G93169 NA non-coding downstream 121427 4282869 ~ 4283295 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 337127 3714919 ~ 3823782 (+)
G92848 NA other upstream 554084 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 565521 3540034 ~ 3595388 (+)
G92838 NA other upstream 670288 3425734 ~ 3490621 (+)
G92826 NA other upstream 696703 3351767 ~ 3464206 (+)
G93150 NA other downstream 13160 4174602 ~ 4217826 (+)
LOC120565391 NA other downstream 123313 4284755 ~ 4313515 (+)
trmt1l trmt1l other downstream 523782 4685224 ~ 4713233 (+)
G93613 NA other downstream 1873927 6035369 ~ 6051520 (+)
G93638 NA other downstream 2040643 6202085 ~ 6214017 (+)

Expression


Co-expression Network