serpinc1


Basic Information

Item Value
gene id serpinc1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1891554 ~ 1908999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811232.1
TGATCTGGGATCAGGGATCTGGCTCCAGCTGTTTGCTGCGGGTCCACATGTTTGTTGACCAGCAGGATCGATGTCTCAAAGGTTGCTGACGGGACGTCCCAGCGCTCTGCGGGACACTGACCCGAGTCTGAAACCACTCAACGCTTCATCAGTTTGGATCCCAACAAGAGAACCAGAATAACTCAACAGAAGCAGAGACGTCTCTCCGTGCAGAATGAGGGCTCCTGATTGGCTGTTGGTTCTGGCGATCCTGCCGCTCGCCTCCCTGGCCGTCCCTCCTGACATCTGCAGCGCCAAACCCAAAGACCTGGGCCTGGAGCCGCGCTGCATCTACCGCAGCCCGGAGCCAGAGGGCCCCACGGTGGCCCCCCCCGAGGCCATCCCCGGCGCCACCAACCCCCGCGTGTGGGAGCTGTCCAAGGCCAACGGGCGCTTCGCCCTGGCGCTCTACAAACAGCTGGCGCTCAGTAAGACCCCCGACGCCAACATCTTCATGTCCCCCATCAGCATCTCCACCGCCTTCGCCATGACCAAACTGGGAGCCTGCAACCGCACGCTGCAGCAGATCATGCAGGTGTTTCAGTTCGACACCATCAAAGAGAAGACGTCCGATCAGGTCCACTTCTTCTTCGCCAAACTCAACTGCCGTCTGTACCGGAAGAAGGACGCGACCACGGCGCTGATCTCCGCCAACCGGCTGTTCGGAGACAAGTCTCTGGTCTTCAGCGAGACGTACCAGAACATCAGCGAGACGGTGTACGGAGCCAAGCTGCTGCCCCTCAACTTCAGGGAGAACCCGGATGCGGCCCGCGTCAGCATCAACAACTGGATCTCCAACAAGACGGAAAACCTGATCCAGGAAACGCTGCCGGTCGGATCGCTGGACTCCACCACGATGCTGGTCCTCGTCAACACCATCTACTTCAAGggccGGTGGAAGAACAAGTTTGACCCAGACCTGGTGTACCAGTCTGAGTTTGAGGTGAGCAGCGAGCGGCGCTGCCCGGTCCACATGATGTACCAGGAGACCCGCTTCAGGTACCGGTCCCTCCCCGAGGACCACGTCCAGCTGCTGGAGATGCCCTACCGCGGAGACCACATCACCATGGTGATCATCCTGCCCGCCAAAGACACCACGCTCGCCCAGgtggaggagagtctggacCTGAACAAACTGACCCGCTGGATGGATGAGATGAAGGAGACGACTGTCTCCGTCTCTGTCCCCCGGTTCAGGGTGGAGGACTCCTTCAGTCTGAAGGAGGAGCTGCAGAACATGGGCCTCACGGACCTGTTCAGCGCCGAGCACGCCAGCCTGCCAGggttGTTGGAGGACGGCAGTGACGTTCTGCACATCTCCGATGCTTTCCATAAAGCTTTCCTGGAGGTGAACGAGGAGGGCAGCGAGGCGGCAGCAGCCTCCGCCGTGGTAGCCGTGGGGCGTTCCCTGAACCTGTTCCGGGAGATCTTCCTCGCCGATCGGCCGTTCCTGCTGCTCATCAGAGAGTCCAGCATCAACGCCCTGCTGTTCACCGCCAGGGTGGCCAACCCCTGCAGCCAATAACATAACCGTGCAGGACTAATGTCCAGCATCAGGCagagtcactaaaagttctgttgttgctgctgacagactcacattatCATTCTAAGAGTctgacattatgggatggatc
>XM_039811233.1
ctgtttgtgtctgaaaACAGTTTGGATCCCAACAAGAGAACCAGAATAACTCAACAGAAGCAGAGACGTCTCTCCGTGCAGAATGAGGGCTCCTGATTGGCTGTTGGTTCTGGCGATCCTGCCGCTCGCCTCCCTGGCCGTCCCTCCTGACATCTGCAGCGCCAAACCCAAAGACCTGGGCCTGGAGCCGCGCTGCATCTACCGCAGCCCGGAGCCAGAGGGCCCCACGGTGGCCCCCCCCGAGGCCATCCCCGGCGCCACCAACCCCCGCGTGTGGGAGCTGTCCAAGGCCAACGGGCGCTTCGCCCTGGCGCTCTACAAACAGCTGGCGCTCAGTAAGACCCCCGACGCCAACATCTTCATGTCCCCCATCAGCATCTCCACCGCCTTCGCCATGACCAAACTGGGAGCCTGCAACCGCACGCTGCAGCAGATCATGCAGGTGTTTCAGTTCGACACCATCAAAGAGAAGACGTCCGATCAGGTCCACTTCTTCTTCGCCAAACTCAACTGCCGTCTGTACCGGAAGAAGGACGCGACCACGGCGCTGATCTCCGCCAACCGGCTGTTCGGAGACAAGTCTCTGGTCTTCAGCGAGACGTACCAGAACATCAGCGAGACGGTGTACGGAGCCAAGCTGCTGCCCCTCAACTTCAGGGAGAACCCGGATGCGGCCCGCGTCAGCATCAACAACTGGATCTCCAACAAGACGGAAAACCTGATCCAGGAAACGCTGCCGGTCGGATCGCTGGACTCCACCACGATGCTGGTCCTCGTCAACACCATCTACTTCAAGggccGGTGGAAGAACAAGTTTGACCCAGACCTGGTGTACCAGTCTGAGTTTGAGGTGAGCAGCGAGCGGCGCTGCCCGGTCCACATGATGTACCAGGAGACCCGCTTCAGGTACCGGTCCCTCCCCGAGGACCACGTCCAGCTGCTGGAGATGCCCTACCGCGGAGACCACATCACCATGGTGATCATCCTGCCCGCCAAAGACACCACGCTCGCCCAGgtggaggagagtctggacCTGAACAAACTGACCCGCTGGATGGATGAGATGAAGGAGACGACTGTCTCCGTCTCTGTCCCCCGGTTCAGGGTGGAGGACTCCTTCAGTCTGAAGGAGGAGCTGCAGAACATGGGCCTCACGGACCTGTTCAGCGCCGAGCACGCCAGCCTGCCAGggttGTTGGAGGACGGCAGTGACGTTCTGCACATCTCCGATGCTTTCCATAAAGCTTTCCTGGAGGTGAACGAGGAGGGCAGCGAGGCGGCAGCAGCCTCCGCCGTGGTAGCCGTGGGGCGTTCCCTGAACCTGTTCCGGGAGATCTTCCTCGCCGATCGGCCGTTCCTGCTGCTCATCAGAGAGTCCAGCATCAACGCCCTGCTGTTCACCGCCAGGGTGGCCAACCCCTGCAGCCAATAACATAACCGTGCAGGACTAATGTCCAGCATCAGGCagagtcactaaaagttctgttgttgctgctgacagactcacattatCATTCTAAGAGTctgacattatgggatggatc

Function

NR:

description
antithrombin-III-like isoform X1

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:2000266 regulation of blood coagulation, intrinsic pathway biological_process
GO:0042221 response to chemical biological_process
GO:0005615 extracellular space cellular_component
GO:0008201 heparin binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03911 SERPINC1, AT3; antithrombin III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811232.1 True 1676 mRNA 0.59 9 1891554 1908999
XM_039811233.1 False 1544 mRNA 0.60 8 1893702 1908999

Neighbor

gene id symbol gene type direction distance location
sid1 NA coding upstream 254056 1635963 ~ 1637498 (+)
LOC120565565 LOC108250349,LOC108249964 coding upstream 260874 1625574 ~ 1630680 (+)
LOC120565564 LOC102210819 coding upstream 316777 1537999 ~ 1574777 (+)
LOC120566171 LOC108248660 coding upstream 510640 1322405 ~ 1380914 (+)
plppr3b NA coding upstream 866411 1010747 ~ 1025143 (+)
LOC120565574 NA coding downstream 71839 1980838 ~ 1993868 (+)
dph5 dph5,LOC102795811 coding downstream 141963 2050962 ~ 2071903 (+)
LOC120565427 NA coding downstream 503232 2412231 ~ 2420605 (+)
LOC120565428 NA coding downstream 514988 2423987 ~ 2427127 (+)
LOC120565432 NA coding downstream 541532 2450531 ~ 2461597 (+)
G92257 NA non-coding upstream 60697 1804469 ~ 1830857 (+)
G92248 NA non-coding upstream 113724 1743775 ~ 1777830 (+)
G92247 NA non-coding upstream 138602 1733566 ~ 1752952 (+)
LOC120565416 NA non-coding upstream 191052 1699420 ~ 1700502 (+)
G92070 NA non-coding upstream 215414 1418749 ~ 1676140 (+)
G92274 NA non-coding downstream 43987 1952986 ~ 1953927 (+)
G92275 NA non-coding downstream 50853 1959852 ~ 1960134 (+)
G92276 NA non-coding downstream 73518 1982517 ~ 1983028 (+)
G92279 NA non-coding downstream 100269 2009268 ~ 2048527 (+)
G92281 NA non-coding downstream 100980 2009979 ~ 2010670 (+)
LOC120565570 NA other upstream 2467 1867721 ~ 1889087 (+)
G92234 NA other upstream 87159 1696974 ~ 1804395 (+)
LOC120565410 camk4,LOC102194929,LOC102785978 other upstream 355698 1463719 ~ 1535856 (+)
G92169 dbt,LOC102778223 other upstream 635360 1241387 ~ 1256194 (+)
trmt13 NA other upstream 662875 1220810 ~ 1228679 (+)
LOC120565575 NA other downstream 79809 1988808 ~ 2025931 (+)
G92293 NA other downstream 163183 2072182 ~ 2076104 (+)
G92333 NA other downstream 456900 2365899 ~ 2369672 (+)
reep6 reep6 other downstream 462989 2371988 ~ 2380260 (+)
G92575 NA other downstream 624745 2533744 ~ 2582371 (+)

Expression


Co-expression Network