dph5 (dph5,LOC102795811)


Basic Information

Item Value
gene id dph5
gene name dph5,LOC102795811
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 2050962 ~ 2071903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811242.1
GTCCAGAGAGACTCCACGTGAAGGCACATAAACATAACGTGAACCGGCTGATCGGCCTCGTGAGTAAAGTTTTTGGTGGTGTTTAGTTCCGCAGCAGTGTGACACCGAGTCTCCGCGGAGAGAGAAGCCGGCAGCATGCTGTATCTGATCGGCCTGGGGCTCGGAGACGCGGCCGACATCACGGTGAAGGGTCTGCAGGCCGTGAAGCGCTGCAGCCGGGTCTACCTGGAGGCCTACACCTCGGTCCTCACGGTGGGGAAGGAGGCTCTGGAGGAGTATTATGGGATGGAGCTGATCCTGGCTGACAGAGACCTGGTGGAGCAGGGGGCAGACCAGATCCTGAAGGACGCAGACACCACCGATGTTGGGTTCCTCGTGGTCGGAGACCCGTTCGGAGCCACCACGCACAGCGACCTGGTGCTGAgagcagtgcatgctgggataccGTACAAGGTCATCCACAACGCCTCCATCATGAACGCCGTGGGCTGCTGCGGCCTGCAGctGTATAACTTTGGGGAGACGGTGTCCTTGGTGTTCTGGACCGAGACCTGGAGACCAGAGAGCTTCTACGACAAAATCTGTAAAAACAGAACAGCTGGACTACACACACTGTGTCTGCtggatattaaagtgaaagagcagagcATCGAGAACATGATGAGAGGGAAGAAGATCTTCGAGCCGCCTCGCTTCATGACGGTCAGTCAGGCTGCAGATCAGCTGATCCAGATCAtccagaggaggaggggggagggggaggagctGGGCGTGACGgaggacactgtgtgtgtgggcgtggcCCGGCTCGGCGCCGACGACCAGACAATCCGCGCGGCGACGTTGCGTCAGCTGGCGTCATGTGACCTCGGCGGCCCGCTCCATTCGCTGGTCGTCACCGGTAAACTCCACCCGCTGGAGGTGGACATGCTGCGAGTGAACGCAGAACCAAACGCACTGCAGCACCTTCACATGATTGACAGCTCCACCTACTGCTCCTAACACACCTCCACCTACTGTTCCTCCACCTACTGCTCCTAACACACCTCCACCTACTGCTCCTCCACCTACTGCTCCTAACACACCTCCACCTACTGCTCCTCCACCTACTGCTCCTAACACACACCTCCACCTACTGCTCCTCCACCTACTGCTCCTAACTCACACCTCCACCTACTGCTCCTAACACGTCCACCTACTGCTCCTCCACCTACTGCTTCTAACTCACACCTCCACCTACTGCACCTACTGCTCCTAACACACACCTCCACCTACTGCTCCTAACTCACACCTCCACCTACTGCTCCTCCACCTACTGCTAACACACCTGATGGACAGCTCCACCTACTgctcct
>XM_039811243.1
CTGTCCAGAGAGACTCCACGTGAAGGCACATAAACATAACGTGAACCGGCTGATCGGCCTCGTGAGTAAAGTTTTTGGTGGTGTTTAGTTCCGCAGCAGTGTGACACCGAGTCTCCGCGGAGAGAGAAGCCGGCAGCATGCTGTATCTGATCGGCCTGGGGCTCGGAGACGCGGCCGACATCACGGTGAAGGGTCTGCAGGCCGTGAAGCGCTGCAGCCGGGTCTACCTGGAGGCCTACACCTCGGTCCTCACGGTGGGGAAGGAGGCTCTGGAGGAGTATTATGGGATGGAGCTGATCCTGGCTGACAGAGACCTGGTGGAGCAGGGGGCAGACCAGATCCTGAAGGACGCAGACACCACCGATGTTGGGTTCCTCGTGGTCGGAGACCCGTTCGGAGCCACCACGCACAGCGACCTGGTGCTGAgagcagtgcatgctgggataccGTACAAGGTCATCCACAACGCCTCCATCATGAACGCCGTGGGCTGCTGCGGCCTGCAGctGTATAACTTTGGGGAGACGGTGTCCTTGGTGTTCTGGACCGAGACCTGGAGACCAGAGAGCTTCTACGACAAAATCTGTAAAAACAGAACAGCTGGACTACACACACTGTGTCTGCtggatattaaagtgaaagagcagagcATCGAGAACATGATGAGAGGGAAGAAGATCTTCGAGCCGCCTCGCTTCATGACGGTCAGTCAGGCTGCAGATCAGCTGATCCAGATCAtccagaggaggaggggggagggggaggagctGGCGTTACGATGTCAGAGGTTGTCGGGCGGCTCAGATTTCAACAGTTTTCTGGATGTTTTTCGTGTGAGCTGAAGACAAACTGTCCTCTCAGAGAAACGTGACAGAGCTGTCAGAGAAAGGCTGCTGGTTGGACCAATGAGAGGAGTGACAGCGCCCCCCAGTGGTCACTGCTGCTCATgtttctcagccaatcagaaatgTTTGTAACGTTTGTCTTTgtgtattaaaaacaaacag

Function

symbol description
dph5 Predicted to enable diphthine synthase activity. Predicted to act upstream of or within methylation and peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Orthologous to human DPH5 (diphthamide biosynthesis 5).

NR:

description
diphthine methyl ester synthase-like isoform X1

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0032259 methylation biological_process
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
K00586 DPH5; diphthine methyl ester synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811242.1 True 1355 mRNA 0.58 7 2050964 2063004
XM_039811243.1 False 1007 mRNA 0.55 7 2050962 2071903

Neighbor

gene id symbol gene type direction distance location
LOC120565574 NA coding upstream 57094 1980838 ~ 1993868 (+)
serpinc1 NA coding upstream 141963 1891554 ~ 1908999 (+)
sid1 NA coding upstream 413464 1635963 ~ 1637498 (+)
LOC120565565 LOC108250349,LOC108249964 coding upstream 420282 1625574 ~ 1630680 (+)
LOC120565564 LOC102210819 coding upstream 476185 1537999 ~ 1574777 (+)
LOC120565427 NA coding downstream 340328 2412231 ~ 2420605 (+)
LOC120565428 NA coding downstream 352084 2423987 ~ 2427127 (+)
LOC120565432 NA coding downstream 378628 2450531 ~ 2461597 (+)
LOC120565421 NA coding downstream 514612 2586515 ~ 2593983 (+)
LOC120565422 NA coding downstream 749739 2821642 ~ 2840859 (+)
G92279 NA non-coding upstream 2435 2009268 ~ 2048527 (+)
G92287 NA non-coding upstream 11723 2038972 ~ 2039239 (+)
G92283 NA non-coding upstream 23937 2025991 ~ 2027025 (+)
G92281 NA non-coding upstream 40292 2009979 ~ 2010670 (+)
G92276 NA non-coding upstream 67934 1982517 ~ 1983028 (+)
G92294 NA non-coding downstream 5174 2077077 ~ 2077775 (+)
G92286 NA non-coding downstream 32510 2104413 ~ 2105048 (+)
G92322 NA non-coding downstream 166481 2238384 ~ 2239423 (+)
G92324 NA non-coding downstream 193364 2265267 ~ 2339571 (+)
G92328 NA non-coding downstream 223450 2295353 ~ 2323896 (+)
LOC120565575 NA other upstream 25031 1988808 ~ 2025931 (+)
G92264 NA other upstream 49969 1867652 ~ 2000993 (+)
G92201 NA other upstream 140901 1578955 ~ 1910061 (+)
LOC120565570 NA other upstream 161875 1867721 ~ 1889087 (+)
G92234 NA other upstream 246567 1696974 ~ 1804395 (+)
G92293 NA other downstream 279 2072182 ~ 2076104 (+)
G92333 NA other downstream 293996 2365899 ~ 2369672 (+)
reep6 reep6 other downstream 300085 2371988 ~ 2380260 (+)
G92575 NA other downstream 461841 2533744 ~ 2582371 (+)
G92770 NA other downstream 910323 2982226 ~ 2983014 (+)

Expression


Co-expression Network