LOC120565455 (patj,LOC104952322)


Basic Information

Item Value
gene id LOC120565455
gene name patj,LOC104952322
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3337832 ~ 3348216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811258.1
GTGTGCTCGAGGTCCGGTTCTGTTGGAGCTCGGACGGCTCAAAGCTGCATCCTGGATCTCATCCAGACGCAACTCACAGGgaagccagATGAGTCGTGTGAGTGGGAACAGTTCAGGAGTCGTGGCTCCGCCcctcacacacacctcaccGTCATGTGACCCcgtgacctctgacccccccCTGACCTCCACCGCCCCCCCGCCCCTCAACAACAACAGGAAGTCCAGCAGCGACATCACTTCCTCCTCTAAGAGCACAGatgctGGCGTCCGTACTGTGGAGATAACAAGGAGTGTGAGTGACTCCCTCGGGGTGAGTATAGCGGGGGGGAAGGGCAGCCCGCTGGGGGACATCCCCATCTTCATCGCCATGATCCAGGCCAGCGGAGTCGCCGCCAAGACGCACCGACTCAAGgtgggcGACAGGCTGGTCAGTATCAACGGTCAGTCTGTGGACGGTCTGACACACAGCGAGGTCGTGGCCATGCTGAAGAACATCAGCGGAAACATCAGCCTGCAGgTGGTAGCAGACACCAACATCAGCGCCATCGCCACTCAGGTGGAGGGTTTGTCCAGCAGCTCCAATCTGTCTGccaacacggacacacacacagcagagccagaGGCTCCGCGGCCCCGCAGCATCAGCCTGGAGAAAGGCTCCGAGGGTCTGGGCTTCAGCATCGTCGGAGGGTTCGGGAGCCCCCACGGAGACCTGCCCATCTACGTCAAGACCGTCTTCAGCAAgggcgCGGCGGCGGTGGACGGGCGTCTGAAGCGTGGCGATCAGATCCTGACGGTGAACGGAGAGAGTCTGCAGGGAGCGACCCACGAGCAGGCGGTCGCCATCCTGAAGAAACAGAGAGGAACCGTCACACTGGACATCCtgtcataacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacagacgctccTGTGACTTCACCCACTTTGACTCTTGGACTACGACTCATCGTGGATCGTGAACTTTGAACTTCccaacatgcaaaaaaaaaaatgaagaaactGCATCAGACGGTTAAACAGAGTTTCTTAATCTTTGGCGTCGGGGCCACAGGAAGGTTTCTCTCCCTCCGACAGGTGTCTGGCTGCTACTGCGCCCAAAAACAGAGAGACATCGGACACGAAAATGTGGCGTTGGGAGCCAGAGAAAGGTTGAGAAACTCTGTTACTATGCATCTAATATCAGAATATCATCTAAAGACTAACAGAATGGAGTCACGATGGACGTTTAAATCAGCCTGCACTagttaacacagacacacacacacacacacacacacacacacacacacacacacacacatgcatacagacacacacac

Function

symbol description
patj Predicted to be involved in microtubule organizing center organization; regulation of microtubule cytoskeleton organization; and tight junction assembly. Predicted to be active in several cellular components, including apical part of cell; bicellular tight junction; and plasma membrane. Orthologous to human PATJ (PATJ crumbs cell polarity complex component).

NR:

description
PREDICTED: multiple PDZ domain protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811258.1 True 1436 mRNA 0.56 8 3337832 3348216

Neighbor

gene id symbol gene type direction distance location
LOC120565438 gadd45b coding upstream 335293 2999620 ~ 3002539 (+)
LOC120565437 LOC104954941,LOC104939024,LOC103367594,LOC105940182,LOC103463144 coding upstream 478714 2845744 ~ 2859118 (+)
LOC120565422 NA coding upstream 496973 2821642 ~ 2840859 (+)
LOC120565421 NA coding upstream 743849 2586515 ~ 2593983 (+)
LOC120565432 NA coding upstream 876235 2450531 ~ 2461597 (+)
LOC120566051 NA coding downstream 281968 3630184 ~ 3633365 (+)
LOC120565880 LOC104960898 coding downstream 478647 3826863 ~ 3854810 (+)
LOC120565394 LOC104935534,LOC103395676,LOC104932847,LOC103395770 coding downstream 783647 4131863 ~ 4132573 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding downstream 793362 4141578 ~ 4142106 (+)
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding downstream 798277 4146493 ~ 4151003 (+)
G92799 NA non-coding upstream 151256 3106455 ~ 3186576 (+)
G92786 NA non-coding upstream 165650 3165682 ~ 3172182 (+)
G92784 NA non-coding upstream 174822 3046489 ~ 3163010 (+)
G92802 NA non-coding upstream 187597 3109071 ~ 3150235 (+)
G92788 NA non-coding upstream 201254 3135416 ~ 3136578 (+)
G92827 NA non-coding downstream 13876 3362092 ~ 3421936 (+)
G92839 NA non-coding downstream 56847 3405063 ~ 3452057 (+)
G92842 NA non-coding downstream 87721 3435937 ~ 3476682 (+)
G92857 NA non-coding downstream 126275 3474491 ~ 3477249 (+)
G92863 NA non-coding downstream 134338 3482554 ~ 3485139 (+)
G92782 LOC103461136,LOC106954349 other upstream 205628 3125889 ~ 3132204 (+)
G92773 NA other upstream 243422 3010674 ~ 3094410 (+)
G92770 NA other upstream 354818 2982226 ~ 2983014 (+)
G92575 NA other upstream 755461 2533744 ~ 2582371 (+)
reep6 reep6 other upstream 957572 2371988 ~ 2380260 (+)
G92826 NA other downstream 3551 3351767 ~ 3464206 (+)
G92838 NA other downstream 77518 3425734 ~ 3490621 (+)
LOC120565459 NA other downstream 191818 3540034 ~ 3595388 (+)
G92848 NA other downstream 252762 3600978 ~ 3606825 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other downstream 366703 3714919 ~ 3823782 (+)

Expression


Co-expression Network