agxta (agxt,LOC102212595,LOC102798621)


Basic Information

Item Value
gene id agxta
gene name agxt,LOC102212595,LOC102798621
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28953375 ~ 28959096 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811269.1
CGTGTTGACAGAAGAAGCCAGAGATAAAAGCGGAAAATGTTGTGACAGAGTCCTGACCTGAGGACCTCACTGGTCAGACAGAGAGGGTGTGCTCAGCTTACCTTTTACTTAACCTTCTCCGtagctttttgtgtttttcctgcGCTTGTCACACTGCTGGGAACATGTCGTCTGTCTCTATACCCCCACCAAAATGCCTGCTGAAATCGTTAGTGGTCCCTTATCGTCACATGTTTGGACCAGGACCTTCCAATGTTCCTTTACGAATCTTGGAGGCCGGGGCCAATCCTGTCATTGGACACATGCATCCAGAGATATTTAAGATAATGAGTGACATCCAAAGTGGAATCCAGTACATGTTCCAGACTGAGAACAACATGACTTTAGCAGTGAGCGGCACTGGCCACAGTGCTATGGAGTGTGCCATCTTCAATGCAGTGGAGCCCGGGGAGAGCGTACTGACGGCAGTCAACGGCATATGGGGAGAGCGAGCAGCAGAAATGGCTGAGAGGATAGGTGCCAGAGTAAATACCATTGTGACGCCCCCTGGTGGTTTCTTCACTAATGAAGAAATTGAGCAGGCTTTATCGAAACACAGGCCAGTGCTGTTCTTCCTTGCACATGGAGAATCTTCTACAGGAGTCTTGCATCCTTTAGAAGGCATCGGACAGCTGTGCCATAAGTATAACTGCTTGTTTCTGGTTGACTCTGTGGCATCATGTGGAGGGACCCCTCTGTACATGGACCAGCTAGAGATAGACATCCTATACACGGGCTCCCAAAAGGTTTTGAATGCTCCTCCGGGTACAGCACCCATCTCCTTCAGTGAGAGAGCATGCCAGAAAATATTAAACCGGAGGACAAAGCCTGTGTCATTCTTCTTGGATCTGAGTTGGCTTGCAAACTACTGGGGATGTGATGGCAAGCTGTCAAGAGTATATCACCACACAGGTCCAGTCACTGCTTTTTACTCTCTGAGGGAGAGTCTGGCTGTCCTTGTTGAAGAGGGTCTGCAGAATTCATGGGAAAGACACCAAGAAGTGGCTGAGTATTTCCATGCTGGCCTAGAGAGCATGGGTCTCAAACTTTTTGTCAAACCAAAAAAAGCAAGACTGCCTACAGTTACCACTATTATTGCTCCTCATGGATATGACTGGAAAGAGATCACAGCCTACATCATGAAAACACATAATTTAGAGATTTCTGGAGGGCTCGGACCATCAGTTGGCTTGgTGTTGCGTGTGGGGCTGATGGGATGTAACAGCAGCAAGGCCAATGTTGACATGGTGTTAGCAGCACTGAAAGATGCTCTGAAACACTGCCACAAGAGCAAAGTGTAACATGTTGCTGTTGGATGCTGTAAAGATAATCAAGAAGGAGATTGTAATAAATAAACCATTATTCTCAGTAGTTGTCTTGTGCAGCTTGAATGGGAACAGTGGACTTGTCTGCATAATAGTACCTTtagtgtggtggtggtgatgatggcgcagtggatataacacatgcctttggtgtgggagatctgggtttgattcccactgcgttacatcaaccaatgtgtccctgagcaaatCACTTAACTCCTAGTTGCTTTAGAGGCGTACAACCTCTGATATacagcaattgtaagttgctttggataaaagcatcagctaaatgaaatgaaattatttttgattttcagtctaataaaaactaataacTAATTTGACATGATAGTATTCCACTCTTAATGGTATATTAGATACATTTAACACAAGTCATATCCTACCCCCTTTTCTAGCAAATTGTATATTTACATCAATGGGTTTTCTCATGGTGGGCTTCTTTCATCATTCTTACTAATACCTCAAACTGTTCCTGTTGTTTTCTGTCCATATCCGAAGCTAAGTGTACTGATTATAGTAGAACATTAAAACATCATATTGactaaggagaaaaaaaactattctaCATATCCCATGAGCTGTAAAATTATTATAGCCTGCTTTTCATCCTGCTAccagaacaaaaacacacacacacacacacacacacacctttcatcGATATCAATACTGGAAGCTGCCTTTTTGTAAATTCAGTGATGTAATGCCTGTGCATTGTGGATTTATTTACCATGTGGATTTATTACTGGACTTACTTACTTTTATTATATCAAAAGTATTAAACAATGTGAATGGaatgtgcaaacacattttATAAAAGGAAACaatattgaaataaataaaaaggagttTTTATAATTTTGAATGTAATCAAATGTTTATAATGTTCCGGACTTATGTTATTATTCTGGACTTTGTGCAGAATGTGCAAAACTATGACTACAATTCCCTTTTTCT

Function

symbol description
agxt Enables several functions, including alanine-glyoxylate transaminase activity; protein homodimerization activity; and pyridoxal phosphate binding activity. Involved in carboxylic acid metabolic process. Located in peroxisomal matrix. Implicated in primary hyperoxaluria type 1.

NR:

description
serine--pyruvate aminotransferase, mitochondrial-like

GO: NA

KEGG:

id description
K00830 AGXT; alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811269.1 True 2348 mRNA 0.42 11 28953375 28959096

Neighbor

gene id symbol gene type direction distance location
fam20b fam20b,LOC102783880 coding upstream 66317 28865643 ~ 28887058 (+)
echdc2 echdc2 coding upstream 198353 28746989 ~ 28755022 (+)
mmachc mmachc coding upstream 290097 28659938 ~ 28663278 (+)
LOC120565214 LOC103376736 coding upstream 303631 28639746 ~ 28649744 (+)
si:dkey-183n20.15 LOC104925996,LOC104959169,LOC100703951,LOC102207780,LOC101477488 coding upstream 368025 28577592 ~ 28585350 (+)
dtymk dtymk coding downstream 58 28959154 ~ 28966583 (+)
hdlbpa hdlbp coding downstream 83808 29042904 ~ 29065102 (+)
sox14 sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210 coding downstream 307266 29266362 ~ 29268436 (+)
LOC120565897 cldn18 coding downstream 367421 29326517 ~ 29331778 (+)
hs2st1b LOC103365674,LOC100712187 coding downstream 393306 29352402 ~ 29373466 (+)
G99108 NA non-coding upstream 265257 28687882 ~ 28688118 (+)
G99007 hook1,LOC102781169,LOC106584290 non-coding upstream 382517 28569648 ~ 28570858 (+)
LOC120565132 NA non-coding upstream 493165 28449543 ~ 28460210 (+)
G98972 NA non-coding upstream 634487 28312594 ~ 28318888 (+)
G98770 LOC104966597,LOC101073477 non-coding upstream 1071064 27879317 ~ 27882311 (+)
G99189 NA non-coding downstream 11391 28970487 ~ 28972086 (+)
LOC120566147 NA non-coding downstream 33132 28992228 ~ 28992610 (+)
G99217 NA non-coding downstream 60439 29019535 ~ 29034406 (+)
G99238 NA non-coding downstream 197588 29156684 ~ 29157107 (+)
G99261 NA non-coding downstream 479066 29438162 ~ 29438722 (+)
ralgps2 ralgps2 other upstream 87888 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 178822 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 807050 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 868988 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 1120520 27659696 ~ 27832855 (+)
G99297 NA other downstream 704537 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 1468407 30427503 ~ 30429291 (+)
G99545 NA other downstream 1851422 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 2136785 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 2654793 31613889 ~ 31643446 (+)

Expression


Co-expression Network