atp5f1d (atp5d)


Basic Information

Item Value
gene id atp5f1d
gene name atp5d
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27090223 ~ 27100256 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811282.1
ATGGGTAGGTTACCAACGTCCTTGTCCTACCAAGCGCACACCGACTGCCTTCACGCAAGGGCTTGAGGATCTCTGTCATTCACTTGAACTTAAATAAAATCAGATTTTCAAACATGATGGCAGCAAGATTTCTCCGCCGTGCTCTCCCCGTGCTGAGGCAAACTCGCTCCTACGCCGAGGCCGTCTCCGGTTCCCCGCAGATGTCCTTCACTTTCGCCTCCCCGACACAGGTGTTTTTCAAAGAGGCCAGTGTGAAACAGGTTGACGTGCCCACGCTCACTGGTGCGTTCGGTATCCTTCCTGCCCACGTACCCACCCTGCAGGTGCTCCGGCCCGGTGTCGTCACAGTCTTCGGTGACGACGGCTCCTCTGCCAAATACTTTGtgagcAGTGGGTCAATAACAGTCAACGCTGATTCTTCGGTGCAACTGCTATGTGAGGAGGCTGTTGCTTTGGACCAGCTGGACATTGCTGCCGCCAAGGCCAACCTGGAGAAGGCCCAGTCTGACTTGGCCGGCACGTCTGACGAGGCGGCGAGGGCAGAAGTTCAGATCAGCATAGAGGCCAACGAGGCCATCGTCAAGGCTCTGGAGTAGACCTGTGGTAATCTCTTGTGTTTCTTTGATGGAAATGAACGGTCAATCTGTGTTTCCAGCTCCGTCACGTCAGTGTCCAGAAGATTCCATGCTTGCTTTGTACAGTGgataaaattacaaaataaatttaTTAGGAAATACCTG

Function

symbol description
atp5d Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton transmembrane transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; eye; genitourinary system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta).

NR:

description
ATP synthase subunit delta, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811282.1 True 740 mRNA 0.53 5 27090223 27100256

Neighbor

gene id symbol gene type direction distance location
polrmt polrmt,LOC101481838 coding upstream 154340 26878308 ~ 26935883 (+)
celf5a celf5,LOC102777648 coding upstream 365822 26522344 ~ 26724401 (+)
si:dkey-110c1.10 LOC100701936,LOC102208033,LOC101482435,LOC102800276 coding upstream 710279 26350599 ~ 26379944 (+)
mbd3b LOC103354193,LOC101480296,LOC101063908,LOC104920733,LOC108230843,LOC105938962,LOC103399996 coding upstream 739796 26342442 ~ 26350427 (+)
tcf3b tcf3 coding upstream 751013 26306622 ~ 26339210 (+)
midn midn,LOC101067279 coding downstream 20442 27120698 ~ 27147156 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding downstream 412899 27513155 ~ 27520341 (+)
tmem161a tmem161a coding downstream 477718 27577974 ~ 27584940 (+)
tmem221 tmem221 coding downstream 505704 27605960 ~ 27611082 (+)
rfxank rfxank coding downstream 512596 27612852 ~ 27615467 (+)
G98545 NA non-coding upstream 74036 27013306 ~ 27016187 (+)
G98544 bsg non-coding upstream 91778 26992898 ~ 26998445 (+)
G98552 hcn2 non-coding upstream 141159 26940912 ~ 26949064 (+)
G98546 NA non-coding upstream 218659 26871344 ~ 26871564 (+)
G98500 NA non-coding upstream 578696 26511184 ~ 26511527 (+)
G98626 NA non-coding downstream 169582 27269838 ~ 27271406 (+)
LOC120566143 NA non-coding downstream 208684 27308940 ~ 27309804 (+)
G98635 NA non-coding downstream 211513 27311769 ~ 27312218 (+)
G98649 NA non-coding downstream 258348 27358604 ~ 27358841 (+)
G98652 NA non-coding downstream 279409 27379665 ~ 27380137 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 293936 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 747930 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 794841 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 1050357 26034751 ~ 26039866 (+)
dot1l dot1l,LOC102793654 other upstream 1070852 25991506 ~ 26019371 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other downstream 272553 27372809 ~ 27377054 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 559440 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 927708 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 1037013 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 1672106 28772362 ~ 28774553 (+)

Expression


Co-expression Network