tmem47 (tmem47,LOC102234870,LOC103464126)


Basic Information

Item Value
gene id tmem47
gene name tmem47,LOC102234870,LOC103464126
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21182803 ~ 21189074 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811283.1
ATCCAGTCCCGTCAGCAGAGCAGAGTGCTGGTCTCTTCGCGACGCGGAGTGAGCGGCAGCTCCCCATCCTGCTACCCACAACACGGCACGGGAAGGGGAGACGACCACATCTTAAACCTGACTAATGTTGCGGATTTGACAGACCCCAAAACACatatgttcttcttcttcttcttctctctttttttttttatgaataagaTACTTTAGATATGGCTTCATCCGTGAGCGGCACAGAGGAGGTCCGGGTGTCGCCGTTGACGCCCCTGAAGTTGGTGGGACTGGTGTGCGTCTTTCTCGCCCTGTGCCTGGATGTCGGGGCCGTGTTGAGCCCGGCGTGGGTCACGGCGGATGACCAGTACTACCTATCCATGTGGGTGTCCTGCTGGAAGCCCGTGAGCTCCGCGGAGTGGTCCTGTAACAGCACGCTGACCACCGaCTGGCAGATAGCCACACTGGCCTTGCTGTTGGGGGGGGCGGCCCTCACCCTCATCTCTTTCCTTGTGGCGCTGATCTCCCTGTGCTCCGGCTCCAGGAGTCGCTGCTACAAGCCGGTGGCTATCATGCTGTTCTCTGCAGTGGTACTCCAGGTGTGCAGCTTGGTCCTGTTCCCCATCAAGTTCATAGAGACAGTCAGTCTGAGGGTGTACCACGAGTTTAACTGGGGCTACGGCGTGGCCTGGGGATCCACCATCTTCTCTTTTGGAGGAGCCATCCTCTATTGCCTCAACCCCAAGAACTATGAAGACTACTACTAAAACGATGTGACACAAGAGGAGAAATTGAGACTCTGTTTCACCCGGTGTCCTCTCCTGTAATAGGAACTTTCTGTCTTTTACACAGTTCACAatcacagattaaaaaaaacaggaaatacaAACGCCTATTGTTAGTTTCAGGACTGGAAATGAGCTCTTCCATTTGATACTGTGAACTTGTTGTCTCAAAGACTATCCTCACACATTGGACCAAAGCCCTGTGCTCTCTGAGAAGGTTTGGCAGCAAACCTGGCTTGGAAAAAGAAATCCAACCCAGCCAGTTTAATTTGAATTTGATAATGTCAGCAATCAGATAATTCTGCATGCATCCCCTTTAAGTGGAACTCCAGTAGATCTGGGCAGCAAATCTGGAGGGAACAGATGGGTTCACTGACCCCATACCAGGACGATTCGGTGGAATACTTAACAAATCAGAGCAAAGAATGAGGTAAACTCGGGCCTATCAGGGAAGTAAGGGACCCAGGGAGGAAGATATCTTATTGAAGTAATATCACGAGGATGACAAAGTGAGGAAGACAGGGCACACCTAAGGAAATGCTACATTTCCCCAGAGATACTGTACTCTACAACTGGAACTTGGCTTAGCCTTCTTCCTCCAGTAGAGTGTAATAGATACATACTGATTATAAACAGAAGCTACCTAAGACAGTAAAAACATTCCACAGCCACCTTCCAAATTATTACATACTGGTGAGAGGGACATTTACTGGTTAATAAATAGCACACACATGTAAACAGTGGAAAAACCTTTGGCTGCTAATGTAAACCTGCAACATAACCCAAGTTATACCTgctttttgataaaaaaaaatggttgtaGTGTACGTATGTATGCACAATAAGCCTAATAAAGTAATATGCATTACAAGAA

Function

symbol description
tmem47 Predicted to be involved in cell-cell adhesion. Predicted to be located in adherens junction and membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Is expressed in gill; heart; integument; and pleuroperitoneal region. Orthologous to human TMEM47 (transmembrane protein 47).

NR:

description
PREDICTED: transmembrane protein 47

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811283.1 True 1650 mRNA 0.48 3 21182803 21189074

Neighbor

gene id symbol gene type direction distance location
cpox cpox,LOC102782768 coding upstream 25721 21152578 ~ 21157082 (+)
p3h2 p3h2 coding upstream 36393 21079634 ~ 21146410 (+)
LOC120564993 LOC104965956 coding upstream 107365 21073118 ~ 21075438 (+)
ccdc50a ccdc50 coding upstream 121964 21036277 ~ 21060839 (+)
usp13 NA coding upstream 314815 20825520 ~ 20867988 (+)
nexn nexn coding downstream 13858 21202932 ~ 21215185 (+)
mindy4 NA coding downstream 28657 21217731 ~ 21226366 (+)
zgc:153738 iqca1 coding downstream 53271 21242345 ~ 21250161 (+)
obscna LOC102302552,LOC103364793,LOC102212669,LOC108230617 coding downstream 71853 21260927 ~ 21308569 (+)
hnrnpm hnrnpm,LOC100701615,LOC102779678 coding downstream 187358 21376432 ~ 21384204 (+)
G96906 LOC103364786,LOC104920247 non-coding upstream 8496 21127063 ~ 21174307 (+)
G96898 NA non-coding upstream 120499 21061672 ~ 21062304 (+)
G96871 NA non-coding upstream 173493 21005731 ~ 21009310 (+)
G96782 NA non-coding upstream 401885 20776558 ~ 20780918 (+)
G96777 NA non-coding upstream 432907 20749212 ~ 20749896 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding downstream 121838 21310912 ~ 21314520 (+)
G97009 NA non-coding downstream 179044 21368118 ~ 21456800 (+)
G97011 dmap1 non-coding downstream 183867 21372941 ~ 21373533 (+)
G97064 NA non-coding downstream 469476 21658550 ~ 21676349 (+)
G97096 NA non-coding downstream 554339 21743413 ~ 21744681 (+)
prkacba prkacb other upstream 617979 20548999 ~ 20564824 (+)
G96513 NA other upstream 1651126 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2397167 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2517690 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 3323392 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 222262 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 365820 21554894 ~ 21557731 (+)
G97093 NA other downstream 501823 21690897 ~ 21782000 (+)
G97321 NA other downstream 1094572 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1296437 22485511 ~ 22491235 (+)

Expression


Co-expression Network