sox2 (sox2)


Basic Information

Item Value
gene id sox2
gene name sox2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10112982 ~ 10115322 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811316.1
GGTCGAAGCCATTTATTCGCTGACAGCCCCGTCACATGAATGGTTGTCTATTAACTTGTTCAAAAACTATCTGGAGTTGTCAAGGCTCAGGCGGACAGAGGCGAAAAAGTAGtttgttgatgctttttcgGAGAAGCGACTGGAGAAGTTTTGTGGACACAACATAGCAGGGACCTATTGGGAGAAGGCTCTTTGTCACTCATACTCACACACAAGCTCTGACACACACTCAccgagaggaagagagagagagagagtgtgtggagACGCGGCTTGGTGCTGGTTGTTTTTGTCCAGAGAAAAAGTTGCAGAGAGAAATCGACAGGTAACttttagcagcagcagcctgcgCTCCTCACTGTCCTCTCTTTGGCTCGTggagtttgtctctgtgttttctttttttcctctgctcGGGAGCTCCAACTAAAAGCTGTTCCTGATGTATAACATGATGGAGACTGAACTGAAGCCCCCAGCTCCCCAGACCAACACGGGGGGCTCGGGCAACACCAACACGTCTGGCACCGGCCCCAACCAGAAAAACAGTCCGGAGCGGGTCAAGAGACCCATGAACGCGTTCATGGTGTGGTCCCGGGGCCAGAGGAGGAAGATGGCCCAAGAAAATCCCAAAATGCACAATTCGGAGATAAGCAAGAGACTGGGCGCAGAGTGGAAACTTCTGTCGGAAAGCGAGAAGAGACCTTTCATCGACGAAGCCAAGAGGCTCCGGGCCCTGCACATGAAGGAGCATCCGGATTACAAATACCGGCCCCGGCGGAAAACCAAGACCCTCATGAAGAAGGACAAGTACACCTTGCCCGGCGGGCTGCTGTCTCCCGGAGGGAACGGGATGGGAGCTGGGGTCGGGGTGGGGGCCGGCCTGGGCGGTGGGGTGAACCAGCGGATGGACAGCTACGCGGCGCACATGAACGGCTGGACCAACGGTGGCTACGGCATGATGCAAGACCAGCTGAGCTACCAGCACCCGGGGCTGAACGCGCACAACCCGAGCCAGATGCAGTCCATGCACCGCTATGACATGAGCGCCCTGCAGTACAACAGCATGACCAGCTCCCAAAGCTACATGAACGGCTCCCCGACATACTCCATGTCCTATTCCCAGCAAACCACGCCGGGGATGACCGCCCTGGGCTCCATGGGGCCCTCCTCGGTGGTGAAGTCCGAGTCCAGCAGCTCCAGCCCGCCCGTCGTCACCTCGTCTTCCcaccgggccgggccgggctgcCAAAGCGGAGATCTGAGAGACATGATCAGCATGTACCTGCCCGGGGCGGAGGTCAGCGATCAGACCGCCCAGACCCGGCTACACATGTCCGGGCACTACCAGAGCACCGTGCCCGGGACGACGATCAACGGCACGCTGCCGTTAACACACATGTAAGAGAcacaaagcagagagagaggtagagagagagagagagagagagagagaaaaaaaaagaacttttaTAAGAGAAACTGTGGACTATTAACGTTGGACTATTTTTGTACAGAAAAATTTCGGGGTGGGAAAAGTTGTATAGAAGTCTCCAGGAAAAAGGACACacgactctttttttttctttcattttattcTAAGGAAGCTCTAGAGGAACGGTAGGAGATCCCCTCTTCACTGGTGGATGAAGTTTGGAAGACTAGAAAGTGGGAGTCgcaatcaaatgttttattattgcaATCACCTTTTGTACAGTATTTATCAAAGAAACATTACAATCAGATGAAATTGTTTGTTAAACTGCAAGaggttgcatttttcttttttctttttcatataaGGCAACGCCAgttctgcaaaaaaaatattaaaagtgaAGATGGCAGAACTGGAATTATGTGGGGAGCGATCAGTTATGCTCCTTTATTACTGCAAACATTGGAAAGAAAAGGGACATAAAAACGAAGCAGgtaatactgttttttttccatttaaggTCAATATtactaaacattttaatttctttaaaaaagttAAGACACTTTTTGTTCTCATACAGCTTAAAATATAGGTTGTTAATTTATATTTCCGTCTCCCACTTTTCATCTGTTAGAGGTATGACGCTTGTGCTCTTTATTTTCTAATTGATTTGTACAATTTCTGTATATTTACTGTgatattttaagtttttatttcgAAATTCATTCCCgtagttgtattttaaaaattgTGGCCTGCAGTACGCAGAAGCCAACCACtccatgtatatatataccGGAACTAATACCATCCTTATAACAGTTACAGTTTCAGCTgagtatattttttttcaatatgcagtttgaaatgaataaattttGGAAATTTGGATACTTGAAA

Function

symbol description
sox2 Enables chromatin binding activity and sequence-specific DNA binding activity. Contributes to DNA-binding transcription factor activity. Acts upstream of or within several processes, including animal organ development; fin regeneration; and otic placode development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including immature eye; nervous system; neural keel; neural rod; and presumptive structure. Human ortholog(s) of this gene implicated in breast cancer; nasal cavity cancer; and syndromic microphthalmia 3. Orthologous to human SOX2 (SRY-box transcription factor 2).

NR:

description
Transcription factor Sox-2

GO: NA

KEGG:

id description
K16796 SOX2; transcription factor SOX2 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811316.1 True 2341 mRNA 0.48 1 10112982 10115322

Neighbor

gene id symbol gene type direction distance location
fxr1 fxr1,LOC106531534 coding upstream 133240 9967354 ~ 9979742 (+)
LOC120565621 NA coding upstream 247527 9851125 ~ 9865455 (+)
LOC120565507 NA coding upstream 315993 9785792 ~ 9796989 (+)
hps3 hps3 coding upstream 327842 9766076 ~ 9785140 (+)
fnbp1l fnbp1l,LOC102783810 coding upstream 441194 9614795 ~ 9671788 (+)
kng1 NA coding downstream 325236 10440558 ~ 10450982 (+)
zmat3 zmat3 coding downstream 378207 10493529 ~ 10503066 (+)
LOC120565703 NA coding downstream 428386 10543708 ~ 10553852 (+)
LOC120565623 NA coding downstream 477515 10592837 ~ 10609226 (+)
henmt1 NA coding downstream 502053 10617375 ~ 10627039 (+)
G94400 NA non-coding upstream 129138 9981422 ~ 9983844 (+)
LOC120565916 NA non-coding upstream 200882 9908907 ~ 9912100 (+)
G94373 NA non-coding upstream 210860 9901195 ~ 9902122 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding upstream 419949 9691929 ~ 9693033 (+)
G94259 NA non-coding upstream 433245 9662132 ~ 9679737 (+)
G94405 NA non-coding downstream 67872 10183194 ~ 10183408 (+)
LOC120565491 NA non-coding downstream 88818 10204140 ~ 10297258 (+)
G94426 NA non-coding downstream 223914 10339236 ~ 10405233 (+)
G94427 NA non-coding downstream 230875 10346197 ~ 10358788 (+)
G94450 NA non-coding downstream 392330 10507652 ~ 10509538 (+)
ttc14 ttc14 other upstream 164745 9933613 ~ 9948237 (+)
G94376 NA other upstream 209793 9902285 ~ 9903189 (+)
G94281 NA other upstream 233784 9817621 ~ 9879198 (+)
LOC120565620 NA other upstream 266707 9844271 ~ 9846275 (+)
G94239 NA other upstream 555414 9552296 ~ 9557568 (+)
atp11b atp11b other downstream 248140 10363462 ~ 10414826 (+)
G94598 NA other downstream 801603 10916925 ~ 10941244 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other downstream 831610 10946932 ~ 10948316 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other downstream 1244368 11359690 ~ 11458146 (+)
znhit6 znhit6,LOC102790327 other downstream 1673813 11789135 ~ 11821882 (+)

Expression


Co-expression Network