LOC120565497 (LOC103370597)


Basic Information

Item Value
gene id LOC120565497
gene name LOC103370597
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11248434 ~ 11304093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811329.1
CGTGGCTTTCAGAGTATGACGCGATCCGCTCTGTTTTGGGACAGGGGACCTGAAAGCTCAGGTGAACTACTTTTACATGtttttctacCGGAGACTGGCTGTAAATCAGCCGATGCAGGCAGCTGTCATGAGGTGAAGACAGCCTACATGATGCGCCAAATAGGACCGGTGGAGCTGGTGCCAGACAGGCCAGGAACAGATGAGTCTCTGCGAGTGTGTGTCTACCCTGGGCCCAGCTGCTGTACCAGTAAGATGGAGGACAGCTACATGGCGGCTGTTCGCAGTGAGACGCAGCAGAAGATGCAATCCTACAGCTTTGAACTTAAGTACCTGATCGCTGGACACACCAAGGCCTACCAAGACACCTTTGAGTCGCTCGTGTCCTTCACATCTAACATGACCAGCACTCTGTTCGACAGCGCCTACTCTGCTCTGGCGTCCGACTGTCGCCCCCTTGTGTTTCGGCTGTTCAGCGACATCAAACGCCACCTTTCTGGAGACTCCAATTCCACATTGGACAACGCTGTGCGTCGGTTCTACAATGATCTTTTCCCGTTGGTCTACCGCCGCCTGCTCAACCCTGGGATCGGCCACCTGACAGCCAAGTCCTATTTCCCCTCCTCCACAAATCACGACGACTGCCTGCGGATGACGCGGCAGGATGTCAGCCCGTTCGGACCCCATCCTCGCCTCCTGGTCAGCAGCTTGTCCCGTGCACTCGGGGTGGGCCGAGCACTGAGCCGACTGCTGGTACTGGCTGGAGAGGTCGTGAACGCGACCGAGAAGGCAACGTTATCCAGAGAGTGTGGGCGAAGCTTAGTGAGGATGCAGTACTGTTCCCACTGTAGAGGGATGACACTGATACGGCCCTGTACCGGACTGTGTGTCAACATTATGAGAGGATGTCTGGTGGGTGTATCAGAGCTTGGCGCCCCCTGGGGGAGTTTGGTGGTGTTGCTTCAACGGTTAGCTGCTACCTTAGCAACCAGCAGCAACCACAACAGCATGGAGTTAGCTCTGTTAGCAGTCCGAAATCATGTGAATGATGCTATACTGCACGCTCAGCTGCACGGGCCACGAGTTACAGCCACAGTAGAGAAGGTGTGTGGACCCCAGGCAGCTGGTCCCATGATGCCAAGTGCAAATCCCACCACCTCGCATGTTACACCATCTGTGAGCCCTTCTACATCAGTAACCTCAGAGAGGTCCAATGGGACATCGCCTCCCTCAGCTCACCAGCGTCTGCAGCCGCAATCCCGCAGGTCATTCCTACTTAAAGGCTCCAGAGGAGACAAGAGTCGCAACCTGAAAAAACTGTCAAGggAGTTTGAGGGCTCTATCCAGCGGTACCAGTGGTTTTTCTCAGAGCTGCCAGAGATGCTATGTGAAAGTGAGATGGAGGTTGAGCAGCACACATGCTGGAGCGGCCAAGAACTCgtagaaagTTATGCAGGTCTTGTGGTTGGCAGCAGTTTAAAAGCCCAGAAGGAGAACCCAGAGATGACCGTCCGTAATACAGATCCTGTGCTCAAGGGGGCGAAACAGAGGCTGGAGCAGctaacacaggaGGTGTTAGTGGACCTCGGCTGGGTGAGCAAAGccagaggaaaggaggaggaagaggagggagggagcgcacagacagagagaggcagcgGAGACGACTGCGATGATGAAGATGGCTGTGAAGCATCTGGTGTGGAGAACGGTGATACATCCAGCGGTCGTAGTCCAGTGACAAAGGACattgctcctcctcctcctcgtcgcCTCGTCCCTCCTCATCACCTCTCACCACCACAGGTGGCTGTTCAAGGCTCAGCCCACACGCTGTCTGTTGAACCTTTGACCCTGGCGACCATGCTGCTCCTACTGCTGTCACCGTGGGAACACCGCTGATCACAGAGAGACGCTCTGACAGAGACAAAAAGACTGAGAGACAACCACAAAGGTTTTGTGGTGAAGTTGAGCATTTGGAGTTTCTGTAAGCACAGGTCAAACCCACTCTGATCGGTTTATGTTTCGGGTGGGACAATCTGTCGGTTCATCACAGTTGCAGGTGCACAGTATGCATTTTAATGTTACCTGTACTGACCTCTACGTGTTTGGTTATGTGTATTTAACTCTGATAGGATAGATTGCACAGCACTACTGACGTTTTTGAAGAGAGatgtaaatacaaatatatatattatatatttatatgaagAATTTCTATAGATAACAAAGGCTTGATGTGTAAATAGAGATTACAACAGAACAGAAGAGATTGACTTGGATGTTAAGCAgtgttttgtttggtttgtatCCCCCATGGAGACTAAGATCCATGACAGCTATAGTTCAAGCTGAAGGTCTTCACTGTATAGCAGCAGTGTGCTCACAGTGAGGGCACTCTTGTGAGGACGTATTAATGTTGAAGAGAACAAAGCACTGATATGCAAAACAACCAATTACGCAATACTTCAGACCATTTACAGATGGCCACGCAGCATAATGAAGAATTTGACAGTTTGGCCTGTAAATCTGTGCGGACTAGAGCCCATCCGGCACTTTTCTTTCACAGAATCATGCTCTTTTTAGTCATGCAAGCTgggtgatttattttatttctgcagCAAGTACTGCATGTTGAGAGTTTCAACTGTGTAACACTTGCTCAAATGTTTAATTCCTCCAAAAATGACCATTTAATAGTTGAGATCTCTCCCAAGAAACTGTGTCCTCTGGTAGTTTGACATTTCTACACATATACAAACCTTTTATGGTCTTGGTAGTTGTGGAAGAACTTAAGACTATTTTCTTCTCAAGATGTACAGCATGCAGAGTTGTAAAAGGACTACAGAAAGGGATGTAACAGCTTCAATTTTAACTTCAATTTCACTTGTAAACTACCACAGATATCTTGACAGAAAGTTCAGAGTAAAAATAAGAATATCCTAACCAATAAAAAGCACCAAATACAAGGAAATACTAAATATGGCCTGTATGTAAGAGCAAAAAGACACAACCTCCTGCCAGAACAATGAATAATTGAACATCTTGTTGTcatatgtaaacacacacaaaacgtgtCACAGTGGCTGGTCTCCATATGTATTAATGAAAACTGCAATAGTGAGATAATATTTAAGACATCTAACAAAATACGTATTATATATTAAAGGCTTTTTCTGAGTCTGATACACATGTTATCAGCTTGTCTCCATCCAGTGAAGACAAGAGATGGAGTATAAGAGAGTGATCAGAGTACAGCTGAGCCCTGGTCCAAACGTGAATTAAATGTAATTCAtgttaattaagactatcaaGTCCTCTCGGCTCTCTGTCGAGTCTCAAACCCCCCAAACTACACACAACAAGCAGGACAGACAACTGGAATACTGATTAATACATTCAAAATGAAGCAAATGAACCAGCTGACTTTCTCCTCATCATTTTGTCCCATATAGTCTTTTGAAAATTCCCTCATAAATGTATCTACTGTCATCACCTGAGACAGTTTATTCAATAAGGAATGTGAGACGACTTCAAAAATACCTTTAAGAGCCAACGTGTGTGAGTTATCTGGGCAGCGAGCCCAAATACCATGTTAGCTGGCAGGATGCTTTCACAACATAATTTGTCAAACAAGCGTGCTATTATTTGATTACTATTTAAACGTTATACCCAAATCAGATGAGATTTTGGATTGGAGCCCGCCACTCCATCCTTCACAGCTCTTGCTAGGCGGCCTCCATAAACAAAACACCAACACGCACCCGTGCACATACAGATAAGTGGATGTATAAAAGAGTGGGCAATTAACAGCAATTTTGGAGTtatgaaaaatttaaaaagaaacattattttataaaCGTATAAACTTGAAAACATAAAAGCTCTCTTGGGTAATAGTTCAAATGTAATCGTCCGGAAAGTGAAGATGAACTGTAAGCCACTAACTgctactgtatctgtggatcaCAGGTTTAAATGAGATATATTTGCATTAAATGACGTGGGACTCTTGTTAGTGCATATTTGTATATGATACCGAGTGATGTTTTTCACATCAGCATAGAAGTGACTTTCTGTTGTTCCTCTTGTACTGTGTTGACATAATGGTTCTCAGCATGTGTGTTGAGGCACACTGGTGTGCCATGGAGGGAGCTGTGCTGCGTGTCATTGTCAAATCATTAAATGTACTTTATCAAGGTTTAACAGCTCTTTGTGTGTAGAAATTCTAATGTTGTTGTAGCAGTATGCAGGAACACCAGGATGCAAGAAACAACCAGTTAGCTACGGTAGTATGGTTTCTCTCCCCACACTCTGAAAACTACTGTGCTAATTTATTCAACTTAACCAGTGACTCTCATGTGAAATTTTATGAAACCTACTGTAATCCATGGTGTCCTGCTACTCTGTTGTGtcattaatctgcagattaatatCCTCAGTAATAAACAGTTTTCAAATA

Function

NR:

description
PREDICTED: glypican-5-like

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811329.1 True 4459 mRNA 0.45 12 11248434 11304093

Neighbor

gene id symbol gene type direction distance location
ccdc17 NA coding upstream 10533 11222522 ~ 11237901 (+)
LOC120565506 NA coding upstream 141236 11105141 ~ 11107198 (+)
LOC120566056 LOC103374891,LOC100702684,LOC101467020,LOC102305063 coding upstream 488505 10748929 ~ 10759929 (+)
LOC120566058 LOC103374891,LOC102305063,LOC100702684,LOC101467020 coding upstream 514473 10722902 ~ 10733961 (+)
tm4sf18 LOC100702951,LOC102305373,LOC101466751,LOC102228636,LOC103155263,LOC104936000,LOC103374892,LOC105936905 coding upstream 533552 10696023 ~ 10714882 (+)
LOC120566075 LOC101470345,LOC102300495,LOC102205443,LOC103370586 coding downstream 7645 11311738 ~ 11356871 (+)
LOC120565022 NA coding downstream 169263 11473356 ~ 11490038 (+)
si:ch211-262h13.5 NA coding downstream 210865 11514958 ~ 11523948 (+)
LOC120566036 LOC104946463 coding downstream 221377 11525470 ~ 11549098 (+)
dnai3 wdr63 coding downstream 252264 11556357 ~ 11576634 (+)
G94706 NA non-coding upstream 8197 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 53504 11194647 ~ 11194930 (+)
G94690 NA non-coding upstream 72217 11176004 ~ 11176217 (+)
G94688 LOC104952604 non-coding upstream 121414 11126756 ~ 11127020 (+)
G94687 lrrc7,LOC103129487 non-coding upstream 126750 11121469 ~ 11121684 (+)
G94747 NA non-coding downstream 272695 11576788 ~ 11577261 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding downstream 347429 11651522 ~ 11659072 (+)
G94813 NA non-coding downstream 612538 11916631 ~ 11920037 (+)
G94997 NA non-coding downstream 1561819 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 1691142 12995235 ~ 12995654 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 300118 10946932 ~ 10948316 (+)
G94598 NA other upstream 307190 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 833608 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 1088553 9985719 ~ 10159881 (+)
ttc14 ttc14 other upstream 1300197 9933613 ~ 9948237 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other downstream 55597 11359690 ~ 11458146 (+)
znhit6 znhit6,LOC102790327 other downstream 485042 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 857545 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 1438712 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 1701475 13005568 ~ 13100445 (+)

Expression


Co-expression Network