polrmt (polrmt,LOC101481838)


Basic Information

Item Value
gene id polrmt
gene name polrmt,LOC101481838
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26878308 ~ 26935883 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811361.1
ACTAGCTTGGTCTCATTTAAGATGGCTGCCTAGTGCTCAGAAGAAACGAGGTTAttacatgtcaacatgtcactTCTCAGAGTGTGTGCCTTTGCTAAATGTCTGAATCGTCGCAGTTTATTTGGAGAGTGTGCTGTTCGCGTGTCTCTTGCGGACCGCTGTCAGCTGTGTGCGTCGATAAGAGGCGGCGCAGTCAGACGTATTTCAGaGACACCATTGCTGTGTCAAAGAAGAAATGTTTCATTTGTAATCCCAAAGAGAGAAGATGCAAAGAAACGTGTACTGGAACAGTCTCAGTTGTTAGACGtgcTTGAGGCCAGGATCCAGCAACTCCAATCCGACATCTTTTTAGATGTCCAGCATGCAAAGGTGCAATTTGTTAAAACCCCCTCTTCTGGAAGAGGGGTTTTACCTACTAAGAGTCCCAAAAGCACACCTAAGGAGAAAAGTAGCATTTCTAAATCAGGACAGACTGTTGCTAAAGGAGCTTCTGAATCTCAGCCCAGCCGCTGGATGGAAAAATTAACTCAGGAGAAGAACAACAAACTCACAAAACAGCAGCACCTCCATCAGAAAGTCCAGAAGAATGTGAAGGAGAAACCTACAGCCAAATCTAAAGGTAGCAAAAGCAGCTCAGTTCTCCCCGGTACATCACATAAAACCATATCTACCACAAAAAAAACGACTGTGCCCTTGATAAAGAACCGAAAAGGACGCATGAAATTGTCCGATGAGATCCGTGCTGCAGTTTCTTCACCAGTTGCCTCCGCTgcttctgcagcagcagcaggaacaGCAGCTATGGCACATAAAGTATCAAAAGGGAAACAGAAGGGCTCTAAAAATCAGGTTCCCGGTAAAGAGGGCCAAAAGCAGACTGTTGCAGATCCCCAGGGCAGGGTCAAAGAGCTGGCTGAGGTGGAGGAGCTGGAGAGGAGGCTCAGTCAACAAGTAAGCCAGTGGACATCTTCAAGTAACCCGGAGCGCCTACAGGAGTACAGTGAGGGAGCCGCATGTGGGGACATCCAGCTGAGCATCCGCTCTTACCTGGAGGCGTGTGTGTTTGCCGGGGACGTTGAGAGGGCGCACCGTTTCCTGCTCAGCCAGCACAGAGTTATGAGTCGACGTAAACATCTGAACACAGGCGTCTACAACATAATAATGAGGGTGTGGGCCAAGAAAgGCACATTAAATCAGATCGGCCGCATGTTTATTCTGTTAGAAGAGGCTGGTCTGAAGCCAAATCTGGGATCCTACTGTACTGCCCTGGAGTGTATGGGCCGCAATCCCAACTGCTCCCCAAAGGTCATCACAAGGTGCCTAAGCCAGATGGAGGAGGATGGCCTTTCTGTGGACGACCTGTTCAGCCAGTGTGTGTTCCGGCAAGATGAGAGGGACATGGTGCTAAAGGCCGTGCACGTTGTCCAGCCCGACTACCAGCCCAGCCTCAACACAAACGCAAACCAGTGCTCCTCATCGCTGGTTAAGGACTTCTACACACAGAGGTCAGACCACCAGTACCCCAAACTGGACTTCACTCAGGAGGATCTCCAGGAGCGTTTCAAACGTCAGCTCCGCATTGAACAGGCCTGCACTATCACCATCGACTCTGTGGAGGCTGCCAAGCCCCTCACTGAAAACATGGCCAAAATGCGAGACTAGCTggggggggggggggcacagtgGCAGAAGATCCTCCTCCATGCCCTGAGGGAGAGTAAGATGATCCTGGCCAACACCAACACCAAGGACTACAGGCTTAACCTTTATCCCTACCTCTGTGTGCTGGAGGATAGGGAGTATGTTGACATCATGATACAGAGTGTTGCCAGCCTGCCTCCCAGTGGAGAGTCACTGAAGATTTTAGCCAGTGATCTGGGCAACAGGGTCTACACAAAGTACTCCGTGCGGCAGAAGCACCAGAATCAGATGGTGGAAAAGCTGGGCAACATTTACAAAGGTTACACAGAGCTGCTGGCCAAAGATACAAAGGAGTATGACATCCTTCCCAGGGAGCATTGGTGTAAGCTGGAGACGGACCAGAGTACGGGGCCCACGCTGCAGGGAGGAGAGACCCACTGGCCATACATAGTAACCCTGGAGCTGGGCACCTACATGGTGGATATGATGGTCAAGAACCTCAAAATTAACAGCGACATCCTGAACCCGGCTTTCGACAGGAAGCTCATCCCTATCCTCTACCACATGTACACCTTTCGTAGCACGCGGCAGGTCGGCTTTATCAAACCCCACCCCATCCTGACTCAGATGCAGCAGGAGGCCATGGAGACCAAGTTGACCTTTGACTCCTATGTGATGCCAATGCAGTGCCCTCCTGTGCCCTGGACGTCCGTCAAGTTTGGAGCCTACCTGTTGACACCGACCAAGCTGATGCGCACAGTGGAAGGGGCCACACAACACGATGTGTTGTTGGAGAAATGCCAGGACCTCCATGCTGTCCTGGACTCTCTCAACCAGCTGGGCAACTGTGCTTGGAGAATCAACAAACCCTTGTTGGATATTATTATCTCTATCTTCAATGATCGGGGTAGTGATAAGCTAGAcatccctcctcctctgtcAGAGGCCCCCAAAATACCTCACTTCAACGCCCAAGATCCCACTTATACCGCTTCTGAGAAAGCCCACATGAAGCGGGAGGTGATTAATGCCAAAAAGAAATGCAGTGAGATGCACAGCCTGCGTATGGACGCTCTGTATAAACTCTCCATCGCCAACCACATGCGGGATGAGATCTTCTGGTTCCCTCACAACATGGACTTCCGGGGACGTACCTACCCCTGTCCTCCGTACTTTAATCACCTAGGAAGTGATGTCACACGGGCTGTGCTTGTGTTTGCAGAGGGGAAGCCCCTCGGTCCGAAGGGACTAGACTGGCTAAAGATCCACTTAGTCAATCTGACAGGACTGAAGAAGAGGAGCTCACTAGACGGACGGCTGGAGTACGCCAACACTATCATGGAGGACGTACTGGACTCTGCGGACAACCCTCTCAATGGTAAGAAGTGGTGGATGAATGCAGATGAGCCTTGGCAGGCTCTGTCCTGCTGCATGGAGCTAGCCAACGCTGTGAGATCTCCCGATCCAACACAGTTCATCTCTCACTTTCCTGTTCACCAGGACGGCTCCTGTAATGGTCTCCAGCACTACGCTGCTCTAGGCAGAGATGTGATTGGTGCCACATCAGTCAACCTCATGCCCTGTGACGTGCCCCAGGATGTGTACAGCGGAGTAGCACAGCAGGTGGAGGAGTTCCGAGTGCGGGATGCAAAGAGCGGTTTGAAGATTGCCCAGGTCCTGGAGGGCTTCATCAGCAGGAAGGTGGTCAAACAGACCGTAATGACTGTGGTGTACGGGGTCACACGCTACGGGGGACGCCTCCAGATAGAGAAAAGACTGAAGGAGATTGAGGAGTTCCCCAAGGAACATGTATGGGATGCATCTCATTACCTGGTGCGTATGGTGTTCAGTGGCTTAAAGGAGATGTTCACAGGGACCAGAGAGATCCAGGATTGGCTGACAGAGAGCGCCAGGCTCATCTCCAAGTCTGGCCACACTGTGGAGTGGGTGACACCCCTGGGTTTACCCATCATTCAGCCCTACCACCGCACACGCAACCAAGTGCTGAAGAGTACCATGCAACATATCAACCTCCAGATCAGCCATGACACCAAAGAGAGGCCGGACACAGTTAAACAGAAGAACGCCTTCCCGCCAAACTTCATCCACTCTCTGGACTCCACACACATGATGCTGACTGCTCTCCACTGCTATAGTGCCGGCCTGACGTTCGTCTCCGTTCACGACTGTTTCTGGACCCACGCCCTCACTGTGGACACCATGAACAAGGTCTGTCGGGAACAGTTTGTCGCCCTACACAGCCAGCCAATCCTTCAAGAGCTGTCCAACTTCCTGCTACTGAAATACTGCGCCGGGCTCCCGACTGAGGCCAAGAACAAGAAGTACCAGGAGTACAGGaggctgttgctgctgctggccaAAGTGCCCAAGACAGGTGATTTTGATCTCCAGCGGGTGAAAGAATCCACTTATTTCTTCAGCTGAGAGACTCATGAGGGCGATCCAGCGGAGGAAGATGAGTGAAATTGACAGAGTGCGGCAGGGAGGCTGCAGGCCCTTGGGTCCCGACTGGCTTTGTCTCCCTCAGACATCAGGACATTGATCCAGCAGCGCCCTGCCTGCCTCCTGGTATTCAGGCTGGCTAGAGCTGCTGGAGGCATTAACACACAGCGAACCTGCCTGATTAACTGACTAGTAGGCTGATGAAACGGAGTGTGGGATACTCATCCAGGCGAAATGACGAGAGAATCAGCACCAGATGGGAATGTTAAGACTTCATTTGATGagaagtactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatactgaCTTCATCACTCAGGAACACTTCCACTGCTTCACCTACAAACTGTAATTGCTagtgattggtgtgtgtgtgtgtgcgcgcgcgcattTTCATGCTGTGAAGACCGCCACAGGGCGCTGACTTGCCTATCCCACCTAATCATCGATCCCATCACTTACTGGATGACAGGATGCTCTCCGATATGATATTTAAACACTTTCTGAAGAAGAGACGTTTCAGAGGAAATGAAAGATGTACAGAAATGGGGATACAAGAAAGAGAAATGTGAAGGGATAAGTCAAGGAGATCTTAGATAGCAATATGTCCCATTGTACTCTTGAATCTTACCTTGGAGTGACTGAGCACTTGACAATTGCactgaaataaatgtgtttcttAAAATGTC

Function

symbol description
polrmt Predicted to enable DNA-directed 5'-3' RNA polymerase activity and mitochondrial promoter sequence-specific DNA binding activity. Predicted to be involved in mitochondrial transcription. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of mitochondrial DNA-directed RNA polymerase complex. Is expressed in brain; eye; and gut. Orthologous to human POLRMT (RNA polymerase mitochondrial).

NR:

description
PREDICTED: DNA-directed RNA polymerase, mitochondrial

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811361.1 True 4911 mRNA 0.51 22 26878308 26935883

Neighbor

gene id symbol gene type direction distance location
celf5a celf5,LOC102777648 coding upstream 153907 26522344 ~ 26724401 (+)
si:dkey-110c1.10 LOC100701936,LOC102208033,LOC101482435,LOC102800276 coding upstream 498364 26350599 ~ 26379944 (+)
mbd3b LOC103354193,LOC101480296,LOC101063908,LOC104920733,LOC108230843,LOC105938962,LOC103399996 coding upstream 527881 26342442 ~ 26350427 (+)
tcf3b tcf3 coding upstream 539098 26306622 ~ 26339210 (+)
map2k2a map2k2 coding upstream 609812 26258304 ~ 26268496 (+)
atp5f1d atp5d coding downstream 154340 27090223 ~ 27100256 (+)
midn midn,LOC101067279 coding downstream 184815 27120698 ~ 27147156 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding downstream 577272 27513155 ~ 27520341 (+)
tmem161a tmem161a coding downstream 642091 27577974 ~ 27584940 (+)
tmem221 tmem221 coding downstream 670077 27605960 ~ 27611082 (+)
G98546 NA non-coding upstream 6744 26871344 ~ 26871564 (+)
G98500 NA non-coding upstream 366781 26511184 ~ 26511527 (+)
G98494 NA non-coding upstream 380047 26498032 ~ 26498261 (+)
G98384 NA non-coding upstream 684219 26191868 ~ 26194089 (+)
G98363 NA non-coding upstream 741678 26135237 ~ 26136630 (+)
G98552 hcn2 non-coding downstream 5029 26940912 ~ 26949064 (+)
G98544 bsg non-coding downstream 57015 26992898 ~ 26998445 (+)
G98545 NA non-coding downstream 77423 27013306 ~ 27016187 (+)
G98626 NA non-coding downstream 333955 27269838 ~ 27271406 (+)
LOC120566143 NA non-coding downstream 373057 27308940 ~ 27309804 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 82021 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 536015 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 582926 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 838442 26034751 ~ 26039866 (+)
dot1l dot1l,LOC102793654 other upstream 858937 25991506 ~ 26019371 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other downstream 436926 27372809 ~ 27377054 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 723813 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 1092081 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 1201386 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 1836479 28772362 ~ 28774553 (+)

Expression


Co-expression Network