fam43a (fam43a,LOC102785697)


Basic Information

Item Value
gene id fam43a
gene name fam43a,LOC102785697
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19338866 ~ 19341056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811429.1
CAGAACTTCGGCGAGATAGGCGACACCGCAATGGACAAGAGCACTTCAGAGGATGAACAGATGAAtaGACTTTGTTGCTGTTGACTGGACACAGCAATAAAATGCTGCCTTGGAAAAAGAATAAGTTCGACCTGATTGAGGAAGACAAGCAGTCCAAGCAGAAGGGCTATGCGGTGAGCCTCAACTACTCTGTGCTCACCTCTTTCGCCAAGTCCTGCCCCGAGAGCGCACTCAACAGGGTGGGCAGCATGTTCAAGTCAAAGAGGAAAAAGGTGAAGATCACCAGTGATGACCCCACATACACGGTGCTCTACCTGGGGAATGCCACCACCATCCAGTCCAAAGGGGACGGCTGCACGGACGTGGCCGTGAGCAAAATCTGGGGCAAAAGCGAAATGGGCAAGAACGGTACCAAGATGAGGCTGACCATCAGTTCGCAGGGCATCCGGATGGTGCATATGGACGACAAGGCCAGGAGGCCGGGACACTTGTACTTGCTGCACCGGATAACCTACTGCGTCGCGGACCCGAGGCTACCCAAGATTTTCGCCTGGGTTTACAGGCACGAAATGAAGCACAAGGCCGTGATGCTGCGCTGCCACGCAGTGCTGGTGTCCAAGCCGGAGAAGGCAAAGGCCATGGCGCTGCTGCTGTACCAGACATCGGCCACGGCCCTGGCTGAGTTCAAAAGACTAAAACGGAGGGACGATGCAaggcaccagcagcagcagctcataGGGGAACAAACCATCCCATTGGTCCCCATCAGGAAGCTGCTGAACGGACAGTGTTACTACAAACCCCCGGTGGAGCGCAGCCGGAGCGCGCCCAAACTGGGCTCCATCACAGAGGACTTGGtcggggaggaggaggaggagaaagcgATGCACTTTGAGTGCGAGGACATTCTGGACACGGACGATGATTGTGTTGCCAACGGTAAACAGGAGTTGACTCAGATTATTAACGATTTGGGAGAGATGAGCATAGGAAACGATGTGCGGACACTGAAAGCTGACCTCAGAGTCACCAGACTTCTGTCTGGAGAGAGCACGGGGAGTGAGTCCTCCATAGAGAGCAACCAGGAGCCCCCACCGCTCACTAACGGGTTTGAGGAGGTAAAGGTGCAGGAAATTGCCTGAATAAGTTTAGGCATTTCTGGGAACCTCTGTTATGTTGTCTCCACAAGAAACATTTCCTCTGTCGTCAACCTTATTGGAGAGTGTTTGTCTAATCTGGTGCCTCCACTACTAGCTGAAATgatccagaaaaaaaagaggattctGGGACAATTACCGCACTAAACACACAATTAGGCTACTGAAtgatatttttttgtgattgtgtaaacacagaaaaaaatggaaaaaaccAAGTACATGCCCATTTGAGAGATGACTGGTTGAACCAACAAAAATCCCAGTGCGCCCTAGAACGCACGGCACTAACTACATCTCTTTTATTATTTAAGAGGATTTGTTGTATCCTCAAGCTTGTTTACTtaacttttttctctctcttttgaaaattacatttttctattGAAAGATGCTCATCATGATCCAAAAACATTCTGTTGTTAAAGCACGTTGTGTTCTTTTCCCAAGTGGTTCAGTGGGTCTAAACAGGCATCCTTAATTTTCCTGTCAGGGCGCTTCTGTAACAgcctgtttatttacatttattttgcacTGTTGTGTAATTCAGTTAAGTATTATGTTGACTACATGTACAAAATGTTTGTTGGTATGTTGTCTGAAACATAAATGTCATATCTTTGctgtgcaaaagaaaaaaccTTTATGTATTAAGATGTAAAGTGAAGATGTttaaatatgttattttttaaagaaaatgtggtTTGTTATGTGAACCTCATAGAAttatcaataaaaaaagaaaattatataATGTCGTTGTGTAGATTTGTATTGGAAAACAAGCAGGCCATGTTTTCCTCTGGTGCTTTTTAATATAAATGGGGTTTACCTTCAGAGGCTCAAATTGAGGTCAGATGCGCTGTGCTGCTAAATAaagtgtaataaaataaatggactatatatatat

Function

symbol description
fam43a Is expressed in several structures, including blood vessel; nervous system; optic primordium; optic vesicle; and solid lens vesicle. Orthologous to human FAM43A (family with sequence similarity 43 member A).

NR:

description
protein FAM43A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811429.1 True 2067 mRNA 0.46 2 19338866 19341056

Neighbor

gene id symbol gene type direction distance location
htr2b htr2b coding upstream 286898 19044010 ~ 19051968 (+)
LOC120565155 acap2 coding upstream 334585 18950200 ~ 19004281 (+)
ppp1r2 ppp1r2 coding upstream 393052 18920138 ~ 18945814 (+)
LOC120565637 ankub1 coding upstream 421392 18911887 ~ 18917474 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding upstream 480972 18848237 ~ 18857894 (+)
LOC120565772 srsf11,LOC103363396 coding downstream 179886 19520942 ~ 19529494 (+)
cth cth coding downstream 233799 19574855 ~ 19586645 (+)
adgrl2a adgrl2,LOC106923620 coding downstream 815354 20156410 ~ 20256594 (+)
samd13 samd13,LOC103130842 coding downstream 1223919 20564975 ~ 20568112 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding downstream 1235467 20576523 ~ 20582264 (+)
G96489 NA non-coding upstream 3951 19334176 ~ 19334915 (+)
G96455 NA non-coding upstream 51193 19279469 ~ 19287673 (+)
G96445 psmd1 non-coding upstream 281054 19056341 ~ 19057812 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding upstream 309402 19024283 ~ 19029464 (+)
G96417 NA non-coding upstream 478945 18782194 ~ 18859921 (+)
LOC120565771 NA non-coding downstream 46176 19387232 ~ 19511208 (+)
G96613 ptger3 non-coding downstream 336112 19677168 ~ 19683076 (+)
G96610 NA non-coding downstream 343094 19684150 ~ 19685085 (+)
G96616 NA non-coding downstream 410064 19751120 ~ 19751372 (+)
G96648 adgrl4 non-coding downstream 659772 20000828 ~ 20002125 (+)
G96418 tsc22d2 other upstream 553230 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 673753 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 1479455 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2962417 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 3037866 16289823 ~ 16301000 (+)
G96513 NA other downstream 189711 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1207943 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2070280 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2213838 21554894 ~ 21557731 (+)
G97093 NA other downstream 2349841 21690897 ~ 21782000 (+)

Expression


Co-expression Network