LOC120565565 (LOC108250349,LOC108249964)


Basic Information

Item Value
gene id LOC120565565
gene name LOC108250349,LOC108249964
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1625574 ~ 1630680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811454.1
ATGACGCCTCAAGAAGTCGTCTTGGGAATTTTAGAAGATTTGGGAACCGACGACTTTGAAAAATTTAAGTGGTtcctgcagcagaaagggacaCTTGAAGATTTCCCAGCAATTCCAAAGTGTAAACTGGAGAATGTAAACAGGAGGATCACAGTGGATATGATGTTCCAAACCTACAGTATAAACACTATTAATGTGACCAGAATAGTTTTAGTGAAGATCAATCAAAATGAGCTAGTGAAGACTTTATCAAACATCATCTATGAATCTGCAGgagagcttgacctgagtaacaacaacctgcaggattcaggagtgaagctgatctctgatggactgaagagtccacaatGCACACTGGAGATTCTCAGTCTGTCGGGTtgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccctcccatttgagagagctggacctgagctacaatcatccaggagactctGGAGTGAAGCTACTGTCAGCGGGACTGAAGGATCctctctggagactggacactctcagggtggagcctgctggactCAGATATTTGACACCAGGTCTATGGaggtattcctgtgaactcacactcgacacaaacacagtgaacagaaacctcaaactgtctgacaacaacaggaaggtgacacgtGTGAAGAaggatcagccatatcctgatcatccagagagatTTGACTTCTGGTgtcctcagctgctgtgtagagatggtctgactggtcgttgttactgggaggttgagaCAAGAGGATGGGTtgatatatcagtgagttacagaggaatcagcaggagaggagacagagatgactgtttgtttggacgtaatgatcagtcctggagtctgttCTGCTCTGATGGTGGTTACTCTGTCTGGCACAATAACATCAGaacatccatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactaaGCCTCTCTATCCTGGGTTTGGGTTCTGGTTCGGTTCTGGTGTGTTTGGGTTCTTGTTTGATTATCCTGGTGCCTCGgtgtctctgtgttctctgtaggacggagagtctcctcctgtttcctactgctgatcagttgagtctgtacaggatcacacttacagaaatatGTCAGGTAATTGTTATaaactaatgaatgaactttgtatAAAATAATTCAGAATTATTGACCAGATTCCTCGTGAACATTATAAACTTCTTCCACTTCCAgtcctttaaagatggaagctgtgatcatCAAATTGTAGAAATGCCGTTGACTTCTGTCATGTTTTGTCTTAAattctgtctcttttcacaataaaagcataaagttac

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 12-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811454.1 True 1437 mRNA 0.44 5 1625574 1630680

Neighbor

gene id symbol gene type direction distance location
LOC120565564 LOC102210819 coding upstream 50797 1537999 ~ 1574777 (+)
LOC120566171 LOC108248660 coding upstream 244660 1322405 ~ 1380914 (+)
plppr3b NA coding upstream 600431 1010747 ~ 1025143 (+)
med16 med16 coding upstream 616361 983651 ~ 1009213 (+)
grin3bb grin3b coding upstream 670338 886359 ~ 955236 (+)
sid1 NA coding downstream 5283 1635963 ~ 1637498 (+)
serpinc1 NA coding downstream 260874 1891554 ~ 1908999 (+)
LOC120565574 NA coding downstream 350158 1980838 ~ 1993868 (+)
dph5 dph5,LOC102795811 coding downstream 420282 2050962 ~ 2071903 (+)
LOC120565427 NA coding downstream 781551 2412231 ~ 2420605 (+)
G92221 NA non-coding upstream 2180 1621108 ~ 1623394 (+)
G92083 NA non-coding upstream 10561 1578519 ~ 1615013 (+)
G92088 NA non-coding upstream 21271 1569368 ~ 1604303 (+)
G92196 NA non-coding upstream 37310 1587737 ~ 1588264 (+)
G92213 NA non-coding upstream 39489 1585119 ~ 1586085 (+)
G92228 NA non-coding downstream 29118 1659798 ~ 1660366 (+)
LOC120565416 NA non-coding downstream 68740 1699420 ~ 1700502 (+)
G92247 NA non-coding downstream 102886 1733566 ~ 1752952 (+)
G92248 NA non-coding downstream 113095 1743775 ~ 1777830 (+)
G92257 NA non-coding downstream 173789 1804469 ~ 1830857 (+)
LOC120565410 camk4,LOC102194929,LOC102785978 other upstream 89718 1463719 ~ 1535856 (+)
G92169 dbt,LOC102778223 other upstream 369380 1241387 ~ 1256194 (+)
trmt13 NA other upstream 396895 1220810 ~ 1228679 (+)
G92157 NA other upstream 421528 1202887 ~ 1204046 (+)
G92146 NA other upstream 455528 1168821 ~ 1170046 (+)
G92234 NA other downstream 66294 1696974 ~ 1804395 (+)
G92264 NA other downstream 236972 1867652 ~ 2000993 (+)
LOC120565570 NA other downstream 237041 1867721 ~ 1889087 (+)
LOC120565575 NA other downstream 358128 1988808 ~ 2025931 (+)
G92293 NA other downstream 441502 2072182 ~ 2076104 (+)

Expression


Co-expression Network