LOC120565597 (sgta)


Basic Information

Item Value
gene id LOC120565597
gene name sgta
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3217726 ~ 3574149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811502.1
GCCAGAGGTCAGGCTCCCGGCCTGCAGCTGGCCATGGAGGAACTGGAGGAAGGAGAAGGCGAGACGCTTGTTGTCTGTCATGCGTTACCGGGCTAATCCACAcctgaaacacagagacagctgGGTCTCTCTCCGTCACCATGACAGACAACAAGCGTCTCGCCTTCTCCATCCTCCAGTTCCTCCATGACCAGCTGCAGGCCGGGAGCCTGACCTCCGGGGCCCAGGAGAGTCTAgaagTTGCTGTCCAGTGTCTGGAGACAGCGTTTGAGATTTCGACTGATGACCAGACGCTCGCCGTGCCCATGACCTTACCGGAGATCTTCGCCACGGCCACGGCCAAGctTCCGTCTGAGTCTCAGGTCAACAACAACGCTGCTCCCCGACAGCCCCACAACTCTCTCAGCGAGGAACAGCGAGAAGAGGCCGAGGCGCTCAAAACAGACGGGAACGACCAGATGAAGGTGGAGAACTTCTCGGCTGCTGTTGAGTTTTACTCCAAGGCCATCGCCATCAACCCTCAGAACGCCGTCTACTACTGCAACAGggctgCAGCCTACAGTAAACTGGGGAACTATGCCGGCGCGGTCCAGGACTGTGAACAGGCCATCTGCATCGACCCAAACTACAGCAAAGCCTACGGGAGGATGGGTCTGGCTCTGGCCAGcctcaacaaacacacagaagcaGCCAGCTACTATAAGAAAGCTCTGGAGCTGGACCCCGACAACGACACGTACAAATCCAACCTGAAGGTCGCCGAGGAGAAGATGGAGACGACCAGCCCAACAGGAGGGATGGGTGGAGTGGATCTGGGGGGTCTGCTCAGTAACCCCGGCTTCATGAACATGgcATCGTCTCTGATGAACAATCCTCAGGTTCAGCAGCTgatGTCGGGGATGATGTCCGGTGCCTACGGTGGGATGCCTGCAGCGGCAGCGGGAGGAGGGGGAACAGGAGGCATGGGGGCAGACCTGGGAGGACTGGGGGGACTGGGGGGACTGGGGGGACTGGGAGGACTGGGGGGACTCGGAGCAACGCTGGGAGGACTCGGGGGCGGAGCTGCACCGGGGCCGACTGCTGCCGCCTCGGGGGGAGATTTATCAGGACTCATCCAGGCgGGGCAGCAGTTTGCTCAGCAGATGCAGCAGCAGAACCCCGAACTCATCGAACAGCTGAGGAGTAGATCAGCCGGGGGTGGCGCTGACCgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtctctctctcctcaggtGTCCACCGTGCTCCAGCAGCTGCAGATCACCAGCGACTACCCTCTGGCCGAGACGATGATGATGCTCGGCTTCTTCCTCACCGTGTTCGTGGAGCAGACCGTGCTCGCCTTCCGCAAGGAGCCGGCGTCCTTCATCGACCTGGAGACCTTCAACGCCGGCGGCTCGGATCCCGGCAGCGACTCCGAGTACGACACGCCCTTCATCCCTCCGGCTCGGAGCTCCCCGGGCGCTCGCAGCTCCCACGGCCACCACGGCCACAACCACGGGCACTTCAGCCCCGCAGAGCTTGTGGGGGCGGGGCCTCTTCGGCTCGCCAGCCTGGTCCTGGCGCTCTCGGCGCACTCGGTGTTCGAGGGCTTGGCGCTCGGCCTGCAGGACGACCTCGCCAAGCTGGGCGGGCTCTTCCTCGGCGTGGCCGTGCACGAGACGCTGGCCGCCGTGGCGCTCGGGGTGAGCGTGGCCAAGGCGTCTCTGGGCATGAGGGACGCGGCCAAGCTGGGCGTCACGGTCAGCCTGATGATACCGCTGGGCATCGTGGTCGGGATGGGCGTGGAGTCGGCTCGCACGCTGGCGGGCAGCGTGGCGTCCGTGGTGCTGCAGGGCCTCGCCGCCGGCACCTTCCTCTTCGTCACCTTCTTCGAGATCCTGTCCCGAGAGCTGGACGACAAGCGCGACCGGCTGCTCAAAGTGCTGTTCCTCGTGCTCGGCTACGCGGTGCTCGCCGCGCTCGTCTTCGTCAAGTGGTGATGAAGACACGTTGGGACCCTCCCCGCAATACCAAAAGTTAAACTTATGACCCCATAATCAGCAGGGCAGCAAAcagtcgacagaaaagccagtcgagatgatcggtctccccgagttggtccaaaaccTGCCTCAGAACACcgacgagacgagacgagacctaatacgtctccatagcaacaggcggcgctactctgaa

Function

symbol description
sgta Predicted to enable molecular adaptor activity. Predicted to be involved in positive regulation of chaperone-mediated protein folding; posttranslational protein targeting to endoplasmic reticulum membrane; and ubiquitin-dependent ERAD pathway. Predicted to be part of TRC complex. Predicted to be active in membrane. Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha).

NR:

description
PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811502.1 True 2208 mRNA 0.62 14 3217726 3574149

Neighbor

gene id symbol gene type direction distance location
LOC120565438 gadd45b coding upstream 215187 2999620 ~ 3002539 (+)
LOC120565437 LOC104954941,LOC104939024,LOC103367594,LOC105940182,LOC103463144 coding upstream 358608 2845744 ~ 2859118 (+)
LOC120565422 NA coding upstream 376867 2821642 ~ 2840859 (+)
LOC120565421 NA coding upstream 623743 2586515 ~ 2593983 (+)
LOC120565432 NA coding upstream 756129 2450531 ~ 2461597 (+)
LOC120566051 NA coding downstream 56035 3630184 ~ 3633365 (+)
LOC120565880 LOC104960898 coding downstream 252714 3826863 ~ 3854810 (+)
LOC120565394 LOC104935534,LOC103395676,LOC104932847,LOC103395770 coding downstream 557714 4131863 ~ 4132573 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding downstream 567429 4141578 ~ 4142106 (+)
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding downstream 572344 4146493 ~ 4151003 (+)
G92799 NA non-coding upstream 31150 3106455 ~ 3186576 (+)
G92786 NA non-coding upstream 45544 3165682 ~ 3172182 (+)
G92784 NA non-coding upstream 54716 3046489 ~ 3163010 (+)
G92802 NA non-coding upstream 67491 3109071 ~ 3150235 (+)
G92788 NA non-coding upstream 81148 3135416 ~ 3136578 (+)
G92876 NA non-coding downstream 9986 3584135 ~ 3584842 (+)
G92853 NA non-coding downstream 28218 3602367 ~ 3619368 (+)
G92878 NA non-coding downstream 28640 3602789 ~ 3603330 (+)
G92879 NA non-coding downstream 33162 3607311 ~ 3613096 (+)
G92850 NA non-coding downstream 45918 3620067 ~ 3625935 (+)
G92782 LOC103461136,LOC106954349 other upstream 85522 3125889 ~ 3132204 (+)
G92773 NA other upstream 123316 3010674 ~ 3094410 (+)
G92770 NA other upstream 234712 2982226 ~ 2983014 (+)
G92575 NA other upstream 635355 2533744 ~ 2582371 (+)
reep6 reep6 other upstream 837466 2371988 ~ 2380260 (+)
G92848 NA other downstream 26829 3600978 ~ 3606825 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other downstream 140770 3714919 ~ 3823782 (+)
G93150 NA other downstream 600453 4174602 ~ 4217826 (+)
LOC120565391 NA other downstream 710606 4284755 ~ 4313515 (+)
trmt1l trmt1l other downstream 1111075 4685224 ~ 4713233 (+)

Expression


Co-expression Network