hps3 (hps3)


Basic Information

Item Value
gene id hps3
gene name hps3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9766076 ~ 9785140 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811520.1
CACGCGATACGTCTACTTCTAATGTAGAATTAAAATACTTTGCACTAAAATGTCAAGATTTGGACCTGAATCCATCAACAACACTAGTAAATCCCCATATTCATTGGTGTTGGATTTTAGTTACTCTCtgtaatgaaacaaaaaaaaaacataacagagTCAGATCCACCCTTTAGATTATGTCAGATCGGTAGCCAATTAGAACGTCAAACGCAATACAAGCAGGATTGTAAACCAATGAAAATCGAGAGTGGGCGGgtgctttgttgttgtggttgacGGTTCACTTCCTGCTTTACCTTATAGCGTGACATAGACATATAGTGTGAAATAAACTGCGGGGgtaaaaggagagaagaaaccgAAGACCTGGCAGCAAAGTGTCCTGTTGGATGAGACCTCCAACACACCCAGACAAAGTGGAGTTTATAGATTTCTCTGCCATCAAAAGAAGACAAAGCAGCAGTAAACCATTGAATTTCCACCCTGGACTGAATCCTCTCTCCAAGAGGCGGAATAAACATGGTGCATGTCTACAACTGCCATCCTTTCGCCTCACAGCAGATAGTACAGgTGGAGCAGGAGCCTGGACTGGTCTGCTGTGGAGGTGGTGTCTTGTTCGTGGTGGCTGCTGGTGGATGCAAGGTGGAGGCCTACAGTGTGGAGCAAGAGGGCTGCCCTTTCATCTGTCGCTTTGCCACCATGGGCACTGTGAAGAGCATCCAGCACAGCAAGattgGAGATTATCTGGTGACCATAGAGGAAAAGAACAGCGCCACCTACCTGAGAGCCTACACCAACTGGCGCTACCAGGCGGAGGGGAAGGCTCGTGTCGGGGTGCGTTTGTTGGGCCACTTGCTGCGTGGAGCGTCTGTGCAGGGCGGAGTGCAGATGGAGATCATTGAGATCCCTCTGTCCACAGaaAATCAGAGTCAGCAGATCCCTCAGAGCACCTGGCCGAACTCTCAGCAGAGCTCCAGTCAGAGTCAAGGTCAGACCTTAAGTTCAAACCAAAATTGCCTGGATTTTGAACGCTCAGTTATCCTGCATCTTCAAAAAATCAAGCCTAAAAAGGTGGCGCTGTGTGGAGGGTATGTGGCGGTGCATGCGGAGCTGGAGGTGCTGGTTCTTAAACTGGATTCATCCTGTGAACAGAATACCTTGGACGAATCATCAGACCCAAAGAAAAccGATCATCTAGAAGACCAGGCTGACTTTCTGGTCCTTCAGAGACACCAGGAGTTGCTCGGTGATCGAGCTAAAGACTGTGACATCCCTGTCAGCATTGAAAAGACCGGGCTGGAGGACAGTACAGGGCAATACACGCTGTCATATGTTCTCTTCAGGCGTTTTACTCCAGATTTCTTCCAGGGCTGCAATGTGGAGGAGACTCAACTCCACTCCCTACAGCTCTACCCGCTGTTCACCAgtaACCAGTCAGTGTATCTGGAAGAACCAACCTGTGTGTTCtgcttcttctctctccccaCCGCCGGCTACCTGTACAGTCTGAAGGGTGGCGTCGAGCTTCTCTCAGCCTATCAGTATCCAGAGAAGGTCCTGGAGGCGGTGCTAACAGACCATCTGTTGCACGTCATAACAAAgaATGCATTGCAGTGTTTCACAGTGCGCTGTTCAGCAGTAGCAGCCAGGATTAAAGACCCCTACATCGACACCACCATCAAGgcctgtcCGCCCTGCAGCCTGGAGGTGTGCGCGCTCAGGATGCAGCTGTTTATCGGTCTGCGCTCATTGTGTGTCTACGGCCGCCATGTTATCCTGCTCTCCACCGCCGACGCAGAGACACCAGAAGAACCAGAACGCACCACACATCGCAGAGGCCTCGAGTTGAAAGAACACACCTTGCTGACTGGTATTTTCCTGGCGGTGGGAATCGATCCCGCAACCACGCCGGCTCTGGAGAGCCTTCTATCACGCCCCTTTCTGAGCAGGAAGTGGACAATCTCTTCTCCCAAAGAAACCAGCTCAGCAGGACACGGATGGAACCTCTATGTGGTCGACACCGTCTCCCCCCTCACTCTTTACCAAGAGATGGTTGAATACAGCCAGCGGTATGCGGAGACCAACCCGCAGGCCCAAAGCCTTCGGCACCTCCTCAGTGAagctcacctcctcctccgtgCCTCCTTACTCCAAACACCAGAGCAGCAAGGAAACATCGAGGGTAATCCCACGGTGTCTCTGCAGACAGATACAGATGGACCAGCTGAGAAACAGACAGCTGTCCAGACAGGCATTCAGGAACTGGAGGAAGCACTGAGGCAGAACTGTGCACAGCTGGGAGACTGTTttagcagGGGCAGTCAGAAGGACTGCCACCTGGCTCTGCCGTACTACCGGATGTCTGGTCTGTCAGTCACAGACATCATAGCCAGGAACCACCCACTTCCCAGCAGCCCTCACTCCTACGGCCCTGGCTTCCTGTTCTACCTGAAGCATTACCTGTTAGAAGAAACAGAGCAGATTCTCAGTCAGGAAACAGCTGATGAGGTCATAGAcattttcagccaatcagagccctCACAGCTCGTCAGTGTGTGTGCAAGCCCACCCGTGATAAACATCAGTCCTGCCCAGACGCTGCAAGTCTTACAACATCTGGAGGCCACAGCTGGCGTGTCGGTTCCTCTGACAATCACCATGGCAACCATGATGCTGCGTTTGGATGACCTGCCACAGTACAGACAGCTGATGGAAAGACATGCTGAGaTGCTGCTGGTGTACGGGTTCATCGAGGAGCCAAGGCTGTTGCTGCACGGCGGAGGTGGaggccagcacacacacatccgTCCCACAGCGTTGACTCGCCAGTTGGCAAAGTCCCAACCAGGACTGCTAGTGGCTGCCATGGTGGCTTTACATGAAAACAACAAAGTCCAGCTGGAACAGGCTGGTCACATATTTAAGGAGCTGGGCTGTGAGAATTGCTTACAGGTGGATTTCTGGGAGGCGATGCTCATGGCCTCCTCACAGGAAGCTGTCATCCAGGAACTTCTGTTCCGACTGGTGTCCGTCTACATCGACCGACTGACAAACACGACGTCGGATGCACACCCCAACGAACCACACGCACCTTCGAGACGCAGGCCGCTGAAGAGCGCAGACGATCTGATGAACTCATGCTCCCAttacggtgctctgtacccgtgGCTCACTGTTCTCAATCCAGCTCAAAATACCAGCTCCCAACACCAGGAGGCGCTGTACAAACTGCAGTCTCTCCTGTGTGGTCCGTCCCTCTCCGTGGGCTCCGTCGTGCCTCTGATGGAGCGTCTGTCAGAGGAATCCTTATGGGGCTTCAGCCTGCACCTCCTCTGCACAACCAGAAGGGGGCAGTATGACAGGAGCATTGAAAAGCTGCTGGACCGATGTCCTCAGGCCATCATAGCCTACGCCAACCACCAGTTACAAGACAAACATATGGTGTTATGGTGGCAGAAGCTGCTCCCAGAGCTTTGTAACAGGACGAGAGCTGCCGCAGACAACAGCATCCTATTGTCTGCTCTCAAAGAGACTCTAGTTGTGGTTGCCATGGAGATGAGCCCCACAGAGTTCCTGGAACTGATGCCTGACGACGGCACGGCATTCTACTTCCTGCCTCACCTCTTGACTTGTAGCCAGAGTCACTTGCTAGCATgactgtctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgctgcaggCCCTTAGCAGTGGTGTTTGAGGATTATTCAACCATggtaacactgaaaacacaataTGTAATCTCTATGCTCTGACCAGCACTTTGTTTCATCAATCATGTACAGGTTTTAATACTCGACCAACTTTTGAGTATTAAGCAATTAAATTGAACATGTAATCAGTTACTTGGGTGATGTATGCTCTGTGTTTTTAGATGACTTAGATATAGAGAAATAGTAGTAGATATAGAAAAGAATCTAATTTGCAGGATACACTGAACAGACTACAGTATATAGAGCACAGATATGAATCAAAAATTGTTTTTCAGTTTCCCTGCAAGTTCATGTTTGTATGCGGATATTGCTTTGTAATTCTGTGTTCTCCATTAATATTGTGAtgtgttgtcatttttgtttcaatgagaatttattttttatttatgtttgtattCCTGAAACTAGTCCTGTAATTCATCAGATAGGCAGTAAGTTTAAAGCACTTCAGAGCTATGGAATCATTTATATTGCCACAAACGTGTCTTGTGAGATTGTTGTCAATAAGCCAGAAAAATGTCATTGGTTGTCACTCATGCAGCAAGTATTCACAACTTCCTGCTAACCTTTTATTGAAGTTTCTTCCTCCTAAGATAAATCGAAGAAACTATTGATTCCTGCTTATGAAGCGTCATCTGGTTAATGTGAAACTCATGTAAGTTAGTAAAGAATAGTTTACTAA

Function

symbol description
hps3 Predicted to be involved in organelle organization. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 3. Orthologous to human HPS3 (HPS3 biogenesis of lysosomal organelles complex 2 subunit 1).

NR:

description
Hermansky-Pudlak syndrome 3 protein-like isoform X4

GO: NA

KEGG:

id description
K20190 HPS3; Hermansky-Pudlak syndrome 3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811520.1 True 4477 mRNA 0.49 25 9766076 9785140

Neighbor

gene id symbol gene type direction distance location
fnbp1l fnbp1l,LOC102783810 coding upstream 94288 9614795 ~ 9671788 (+)
LOC120566020 LOC103374322,LOC104940880,LOC103131468,LOC106964853 coding upstream 162501 9589156 ~ 9603575 (+)
depdc1a depdc1 coding upstream 178407 9575258 ~ 9587669 (+)
trnah-gug_12 NA coding upstream 193707 9572298 ~ 9572369 (+)
LOC120566012 NA coding upstream 260149 9406710 ~ 9505927 (+)
LOC120565507 NA coding downstream 652 9785792 ~ 9796989 (+)
LOC120565621 NA coding downstream 65985 9851125 ~ 9865455 (+)
fxr1 fxr1,LOC106531534 coding downstream 182214 9967354 ~ 9979742 (+)
sox2 sox2 coding downstream 327842 10112982 ~ 10115322 (+)
kng1 NA coding downstream 655418 10440558 ~ 10450982 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding upstream 73043 9691929 ~ 9693033 (+)
G94259 NA non-coding upstream 86339 9662132 ~ 9679737 (+)
G94238 NA non-coding upstream 214385 9547714 ~ 9551691 (+)
G94231 NA non-coding upstream 225017 9540537 ~ 9541059 (+)
LOC120566016 NA non-coding upstream 270719 9493981 ~ 9495357 (+)
G94373 NA non-coding downstream 116055 9901195 ~ 9902122 (+)
LOC120565916 NA non-coding downstream 123767 9908907 ~ 9912100 (+)
G94400 NA non-coding downstream 196282 9981422 ~ 9983844 (+)
G94405 NA non-coding downstream 398054 10183194 ~ 10183408 (+)
LOC120565491 NA non-coding downstream 419000 10204140 ~ 10297258 (+)
G94239 NA other upstream 208508 9552296 ~ 9557568 (+)
LOC120566011 NA other upstream 222541 9384505 ~ 9543535 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other upstream 597199 9147162 ~ 9168877 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 1479640 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1860829 7896145 ~ 7905247 (+)
G94281 NA other downstream 32481 9817621 ~ 9879198 (+)
LOC120565620 NA other downstream 59131 9844271 ~ 9846275 (+)
G94376 NA other downstream 117145 9902285 ~ 9903189 (+)
ttc14 ttc14 other downstream 148473 9933613 ~ 9948237 (+)
LOC120565490 NA other downstream 200579 9985719 ~ 10159881 (+)

Expression


Co-expression Network