ccdc17


Basic Information

Item Value
gene id ccdc17
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11222522 ~ 11237901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811528.1
TACGTTTAGAAGAACTCATGGTGGCATGGTGACAGTTACCAACAAACATACAAGCCTCGGTAGTTAAGGAACAAACCAAACATGTTCTACAGCCTTTAAGTGAACCGACCATTCGATTTCATTTTGAGTACTACAAGGTAGTTTGTGTATTTATCTGGAGAATACCCTTTGCAACAATATTTTTTGGGGGACCTAATATTGTTTGTGTATTATTtctacagtatttcagtttacgGTTAGGCTATTTGTTGAAGATTTAAACCAGACTTTATTTAAGCTTCCTGCAAACCTTGTCTGAAACCAGATGGACCGGGAATTGATCTGCGGAGAATGTAGCATGGTGTTTCGCTCCGCTGGGCTGCTTGAGAAACACAAAGCACTGTTCTGCGTCGGGAGCGAGGTAAGACACCTTCGGGTGCAAAGACACAGCTCTGAACATCTCCTAAGAGACAGACGTGGATGTGTGGACCCTAAACAGACAAGAACCCCTGATCTCATCCAGcTGAGAGATCAACGGAGGAACATCACCAGGCGGACGGATGTTGACGCCAAACCAGCGCCAGCGAGAGCAGAGGACAAACCAGCAACCAGTCAGACAGAGAGTGCTGCTCTGCAACATCTCACACATGAGTTTCACAAGTTGAGGATGTCCATTGAAGAAAATCTGCCAAAATGGTCAAAAGGGACCTCAGATACTGAGTCAAGTGAGCGTCAGCTGGGTCACAGTGAAAGACTGAAGGAGATGAGGGAAATGGCGATGAACCACGAGCGCCAGCTGACCCTGATACATGCTCACAACCAGCAGctggagcagcagagagacGagcTGGCCCATCAGGTGAGAGTCCTGTCTGAGCAGAGCAACACAACTCACCTGGAGAGTCTGCTGATGGAGCTCAGAGAGCAGGAGGAAAGAAACGAGGACACGCTGCAACAACTCGCTGAACATCTCCGTGCATCACAtgTGCAAGAGGTCTCTGTACCCGCCGATCAGCCAGACCCACGCAAGAATAATCATGACAGCTACGAGCTCATTTCTTCCGCGGATGGCCCTCTCTCTACCCAGATAAAAGCCCTGTGGCAGGCATACATGCAGTCAGGTGGGTCAGATCCAGCCATTGTGGCACAAATGATTGACCTGCAGGCAGAAGCCCAAAGTCTGGAGAAAAACCAACCAGCAACAGCCGGCAGGGCCAAAAAGAAGAGGGCGAAGCCTCGTCAGCGGGGTGTGAGCTGGGAGCTGCTGGCTGTGGAGCAGGACAACACGAGACTGGAGGAGGAGATCCTCAGGACCCAGCTGCTCAGAGAGCGACACCATAACTATGACGCAGCAGTGAGGACTGAGCTTGAGCAGATTCAGAATGAGAACCTTCTGCAGTTAGCCAGTTCACaggcagagatggagagaagcAAAGAAGCTCCCAGGCCCAGGAGACAgcctcctccacctcccctcCAACCCAAGACTCTCATTCATGCTCCTCTTTCACTGCTCCAGGCCAGATCCTTCTCCTCTCCGATGGGAAGATACATGTTCCGGGACTCATTGGGTCCAGCCCCCTACGACCCTGCAGCTGGTTTCGTGGTTTTCTACGACCTGGTGCTGGGAGTTGATGTCTCCCAGAGGGCACTGCGCCTGGTGGCAGCTCTCTACTcagagggggaggaggtgggACCACCAACTCCACTGCCCCCAGTCCAGTGCCTGCCGGGACCTTCCCTGCCTTATGCCCACACTCCTGGAAACTACGCCCTCCTGTCGGTCAGACAGCCTGTACCTAGGAGACACcccttttttttgtggggggggggggggcccagagATCTGGATGTTGATGGCCAGGAGGTTTTCAAACTGGCATCCTGCGGCTGGACACGAATGGAACTCTTTGACCAATACAACCAGCTCCGTAGTGGCCACTGGAGGGTAGCAGTGCGCAGTCTGCCTATCAGACCCTCCTTAAGCCTTGCCCAGCTCAACTCAGTACAGCAGGTGGGCCACTTGGAGCTGTGTGTACGGTTGGTCAACGGACGAGATGGAGATGTTCAGACTCTGGCAAAGCCTGACCCGACAAGCACCAGTCACTATAAATACCCAGCTGTGGTGGCCACACATCCTGCCACAGTCCATGGAAATGCAGCTCTGCCAGTTTCAGCGCCACAGCCCACGGGACTGGATGAACTCTTGTCTCTCACTGACCACCAAGACCCTCCACCCACAGATGTCAGTGTtgaaaaggacaaaaatgtTATGCAGAAAACATCTCTACAATCAGGATACAACATATGAACTGTTCTGGAAGTTAAATGCGGGCTCCTTACTCCCCTCATCTTCTTAAGACAATTACTTTCCTTGTTGCAGTTAAAATATGCAGCGGTCAACAGTAGAAGCTCAGTTATGCATTACAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811528.1 True 2409 mRNA 0.52 15 11222522 11237901

Neighbor

gene id symbol gene type direction distance location
LOC120565506 NA coding upstream 115324 11105141 ~ 11107198 (+)
LOC120566056 LOC103374891,LOC100702684,LOC101467020,LOC102305063 coding upstream 462593 10748929 ~ 10759929 (+)
LOC120566058 LOC103374891,LOC102305063,LOC100702684,LOC101467020 coding upstream 488561 10722902 ~ 10733961 (+)
tm4sf18 LOC100702951,LOC102305373,LOC101466751,LOC102228636,LOC103155263,LOC104936000,LOC103374892,LOC105936905 coding upstream 507640 10696023 ~ 10714882 (+)
LOC120565966 LOC101466472,LOC102777579,LOC108238401,LOC101066382,LOC106527066 coding upstream 531436 10681539 ~ 10691086 (+)
LOC120565497 LOC103370597 coding downstream 10533 11248434 ~ 11304093 (+)
trnam-cau_8 NA coding downstream 10674 11248575 ~ 11248647 (+)
LOC120566075 LOC101470345,LOC102300495,LOC102205443,LOC103370586 coding downstream 73837 11311738 ~ 11356871 (+)
LOC120565022 NA coding downstream 235455 11473356 ~ 11490038 (+)
si:ch211-262h13.5 NA coding downstream 277057 11514958 ~ 11523948 (+)
G94691 NA non-coding upstream 27592 11194647 ~ 11194930 (+)
G94690 NA non-coding upstream 46305 11176004 ~ 11176217 (+)
G94688 LOC104952604 non-coding upstream 95502 11126756 ~ 11127020 (+)
G94687 lrrc7,LOC103129487 non-coding upstream 100838 11121469 ~ 11121684 (+)
G94686 NA non-coding upstream 102641 11119390 ~ 11119881 (+)
G94706 NA non-coding downstream 543 11238444 ~ 11240237 (+)
G94747 NA non-coding downstream 338887 11576788 ~ 11577261 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding downstream 413621 11651522 ~ 11659072 (+)
G94813 NA non-coding downstream 678730 11916631 ~ 11920037 (+)
G94997 NA non-coding downstream 1628011 12865912 ~ 12866251 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 274206 10946932 ~ 10948316 (+)
G94598 NA other upstream 281278 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 807696 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 1062641 9985719 ~ 10159881 (+)
ttc14 ttc14 other upstream 1274285 9933613 ~ 9948237 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other downstream 121789 11359690 ~ 11458146 (+)
znhit6 znhit6,LOC102790327 other downstream 551234 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 923737 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 1504904 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 1767667 13005568 ~ 13100445 (+)

Expression


Co-expression Network