LOC120565634


Basic Information

Item Value
gene id LOC120565634
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18689219 ~ 18701367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811541.1
ATGGCACTCAAGGATACTACACTGAAGTCTCTCCCTCCATCAGCCAGGCCCACTGTGGTCATGTTTCTCATTCTTATACCAGCTGCATGCAGTGCCATCAAGCTGAATTGTTCTCAGCCCAACCAACCAGCCCTGCTGGAGGCTCTGACTCCAGTCTTCAACCTGAGCTCCATACGACCCGTCATGAACATGACCACCTGCACCAACATCACCATAGACTTTACCATGTATGCGATACTAGGAGTGcGGTGGATGAACGAATTTGTCAGCTGGGACCCAATCAAGTGCGGCACCAACATGATATCTCTTCCCAGAGAGAAGTTTTGGGTACCAGATATTGTAATCAATGAAttTATGGATGAAAACACAGCCCCCTTTGTCCCGTATGTGTATCTGTATAGCAATGGTCTAGTGCATGATGCTAAACCAGTCAGAGTTGTCAGCTCCTGTAACCTCGATATCTACACCTTCCCCTTCGATGTACAGAACTGCACTATGACTTTCGGCTCCTACATCCACTTAGCAATGGACATGAAGATTTTCCTTGGGAAAACTCCAGAGGACATCACAGAGTACTCCAAGGAGGTGATGACCACCATGGGGGAGTGGGAGCTGCTGGATATCACCACCCACAAATACAACCATAGCCTTAACGATAGTGATTACATTGATGAGCTTTCATTTCATATCAGAATTAGACGCCGGGCCACCCTCTATGTGGTGAACCTGCTGATCCCCAGCTGCTTCCTCATCACAGTGGACCTCTTCAGCTTCCTGCTGCCTCCTCAGACTGTGGACCGGTCCACCTTCAAGATGACCCTCATCCTGGGCTACACCGTCTTCCTGCTCATCATGAATGACCTGCTGCCGATTACCGGAAACACCATACCTCTCATaaaTGTGttcttgtctgtctgcctggcTCTGATGGTGGCAAGTCTACTGGAGACTATCCTCATCACCAACCTGCTGTGTGGCTCTGCTGACTTCTCTCCCGTTCCTCGCTGGATCCAAGTGCTTGTTATGCAAATTTTGGGCCGCCTCCTTTGCCTGCCTCAGAAGACTAAAGAACTAAGAGATTCAGACATGAAACCCAATGCCGTGGTGGCACAGCAAAAAGCTGATGACGGGCTTCGAGAGGAGTGGGGGCCAGCGGTGGAGAACAAGGCCCTGCAAGAGCTGAGGAGCCTGGGAAGAGACCTCCAGGCCGTCCGCCTTCAGGTGGAGCAGCAGCTGGGTGGAAGCCAGAGCTCGGAGGAGTGGATCCAGGTGGGTTTCATCATAGACCGCCTGCTATTCGGCCTCTACGTCCTCTTCATATCAGTCAGCTTCTTTACCATCATCATTATCTGGTGCTGCCCGCTGAAAGTCAAGCCTTCTAAGGTTCTATTCATCTTCATCTCTGTGCTCATGCATGCTCCGTGCAGTTCCATCATGCTGAGCTGCTCTCGACCTGACCCGCCTTCCCTGCTGGAGGCACTCGAGCCAGTCTTCAACATGAGATCCATTCGacctgtcatgaatgtgtcaacCCCCACCAACGTCAGCATTGACTTCACTCTGTTTGGCATTTTGGGGGTGGATGAAAAGGCCCAGGTCTTGAAAACATATATCTGGCAAAAATTAaaatggaaaaatgagTTTGTCAGGTGGGACCCAGAACAGTGTGGTTCTTCATGGATTACAATTCCAAGGAATCTGCTCTGGGTACCAGATATAGTCATCAATGAATTTATGGAGAAGAACTCAGCTCCATTTGTCCCATACAGCTATCTGTTTTCTAATGGCTTCGTGTTTGATGAACAGCCTGTCAAAGTGATCAGCTCCTGCAGGCTCGACATCTACACGTTTCCATTTGACATCCAGACCTGCTGTTTAAGCTTCAACTCCTACTTACTCTCTATGGCTGCTATGCCAATTGACCGGTCATCAACTGCAGAGGATATATTTAGATTCTCTAAAGAAGTGATGACAACTAAGGGTGAGTGGGAACTAGTTGGACTCACAACGAAGACATTCATACTACCAGCTGGGGACTACGGACTGTACCAAGAGATTCGCTTCTATGTGTCAGTGAGGCGCCGGGCCACCCTCTATGTGGTGAACCTGCTGATCCCCAGCTGTTTCCTCATCACAGTGGACCTCTTCAGCTTCCTGCTGCCTCCCCAGACTGTGGACCGGTCCGCCTTCAAGATGACCCTCATCCTGGGCTACACCGTCTTCCTGCTCATCATGAATAACCTGCTGCCTATTACTGGAAACACCATACCTCTCATAAATGTGTTCCTGTGTCTGTGCCTGACTCTGATGGTGGCAAGTCTACTGGAGACTATCCTCATCACAAACCTGCTGTGTGGCTCCACTCACTACTCCCCAGTCCCTCACTGGGTCAGAGTGTTTGTTCTTCACATCCTCGGCCACCTTGTACGGCTTCCTCCAAAGCCCAGAGATCTAGACGGCCCAGTCATCCAAAATCCTTCCGCACAAGAAATGAAAGTCTCCTCTCTGGTGGCGGAGGTCAGCGAGGCTCCAGAACAGAAGGGGCCGCTGGATGAGGATAAGGCCCTGCAGGAGCTGAGGAGCCTGGGCAGGGAACTCCAGGTCATCCGCCTACAGGTGGAGCAGCAGCTGAGCAAAAGCCAGAGCTCGGAGGAGTGGATCCAGGTGGGTTTCATCATAGACCGCCTGCTGTTCAGCCTCTACATCCTCTTCATATCAGTCAGCTTCTTTACCATCATCATTATCTGGCTGCAGTCATACAACAAATCCTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811541.1 True 2772 mRNA 0.50 18 18689219 18701367

Neighbor

gene id symbol gene type direction distance location
LOC120565951 NA coding upstream 3471 18684198 ~ 18685748 (+)
LOC120565952 NA coding upstream 5822 18682070 ~ 18683397 (+)
mfsd8l1 mfsd8 coding upstream 747484 17928603 ~ 17941735 (+)
polr2h polr2h coding upstream 762583 17920839 ~ 17926636 (+)
LOC120566214 NA coding upstream 816808 17872278 ~ 17872411 (+)
LOC120565635 LOC103364550,LOC102304031,LOC101475589 coding downstream 527 18701894 ~ 18712465 (+)
LOC120565156 NA coding downstream 14387 18715754 ~ 18733910 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding downstream 146870 18848237 ~ 18857894 (+)
LOC120565637 ankub1 coding downstream 210520 18911887 ~ 18917474 (+)
ppp1r2 ppp1r2 coding downstream 218771 18920138 ~ 18945814 (+)
G96372 NA non-coding upstream 29338 18659642 ~ 18659881 (+)
G96361 NA non-coding upstream 67877 18619558 ~ 18621342 (+)
G96353 NA non-coding upstream 75959 18613029 ~ 18613260 (+)
G96341 NA non-coding upstream 102254 18586628 ~ 18586965 (+)
G96273 NA non-coding upstream 796821 17891652 ~ 17892398 (+)
G96398 NA non-coding downstream 43149 18744516 ~ 18744857 (+)
G96399 NA non-coding downstream 47753 18749120 ~ 18751861 (+)
G96417 NA non-coding downstream 80827 18782194 ~ 18859921 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding downstream 322916 19024283 ~ 19029464 (+)
G96445 psmd1 non-coding downstream 354974 19056341 ~ 19057812 (+)
nmur1a LOC103368681,LOC104952433 other upstream 24106 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 829808 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2312770 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 2388219 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 3056407 15523929 ~ 15632812 (+)
G96418 tsc22d2 other downstream 81233 18782600 ~ 18785636 (+)
G96513 NA other downstream 829400 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1847632 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2709969 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2853527 21554894 ~ 21557731 (+)

Expression


Co-expression Network