LOC120565635 (LOC103364550,LOC102304031,LOC101475589)


Basic Information

Item Value
gene id LOC120565635
gene name LOC103364550,LOC102304031,LOC101475589
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18701894 ~ 18712465 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811542.1
ATGGGTGTCAGCAAAGAGCCTTTGGGCCCAACGTGGGTGTGTAACCCCCTGCTAATAACAACGTGCAGGTGTcagcctgtgtgtctgtttgaccGACACATGCAGCAACAGGATGAGCCTCTGCATtcacacaaaatcacaaaatCCAGCAATGCGGCACCTTTCCGCAGGGTTGTGCTGAGTAAACTGTCGTGTAAAGAGGGCCACAGCGGTCCAACCTATGAGTCCATGCAGGCTGTGTTTGACCTAAAAAACTTCAGGCCAGCAGTGAACCTCAGCAATCCCACCATAGCTAACCTCTCCTTCACCCTGTATGCTGTCCTGGGGGTGAATGAGAAAACCCAAATACTCACTACTTTCTTGTGGCTGAGACTGTACTGGCAACACGAGTTTCTGGTTTGGGACCCTGATGAGTGTGACGGCGTCAGCAGGATTTCTCTCCCTGTGAGGGAGCTGTGGTGTCCAGACATCATCGTGTATGAGTTTGTGGATGATGATGTTTCCCAAGCGTGCCCTTACGTCTACCTCAACCACACAGGTCGCATCCGCTGGGACAGGATGCTTCGGCTTGTCTCAGCCTGCAACCTGGAGATCTTCAGTTTTCCTTTTGACGTGCAGAACTGCACATTTACATTTGGCTCCTACATGCACACCATAAGGGATGTGAGGATCACTCCAGCCCTGACTTTTAAGCAGATGTCTGAAAACTCAAAGCGTTACCTGGAAGCCAGTGGAGAGTGGGAGCTGGTGGACATACTGGGAGAGACCTCCATCCTCAAGTTTGGGGTCGACGAGTGGGACATCATCACGTTCTGGGTGGTCATAAAGCGACAGCCAATGCTCTACGTGGTCAACCTGCTGATCCCCAGCTCCTTCCTTATGCTCATCGACATCCTGTCCTTTTACCTGCCCCCCCATAGCGTTGACCGCGCCTCCTTCAAGATGACCCTCATTCTGGGCTACACCGTCTTCCTGCTCATCATGAATGATCTGCTGCCAAGCACAGCAAACGGCACTCCCATCCTAGGTATCTATTTCTCAGTGTGTCTGGCCCTCATGGTCATCAGTCTTCTGGAGACAGTTATCATTACCAATGTCCTCCACCACAGCACCATGAAATATAAAGAGGTTCCAAACTGGGTGAGGGTGGTTGTCCTCAAACACATAGGAAACCTCATCTGCTACCGTTTTCCGGAGGACATCCAGCCCCCTTATTTACCACAGAAGGATAAACCTGAAAATTCAAATGGTGTTCCAGAGTCATGTATCATCCAAACAGCCAGCCAGACACCTACCCAGCACCCAACCAGCAACGGAGGTGCAGCTGCTCTGCCTGAACTGCAACAGATCTGTCAACACCTTGGCGACGTTCGTGCCCACCTCACCTCGCTGCAGAAAGAGAGCGAGCTGCAGGGCCAGTGGTGCCATGTAGGATATGTCCTTGACTTACTGCTCTTCCGGATCTATCTGCTGCTCATTTCGTGTTACGCCTTGGTCATCATCTGCATGTGGTGCATCTGGATCCGCCAGACCTAG

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG:

id description
K04819 HTR3; 5-hydroxytryptamine receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811542.1 True 1536 mRNA 0.52 10 18701894 18712465

Neighbor

gene id symbol gene type direction distance location
LOC120565634 NA coding upstream 527 18689219 ~ 18701367 (+)
LOC120565951 NA coding upstream 16146 18684198 ~ 18685748 (+)
LOC120565952 NA coding upstream 18497 18682070 ~ 18683397 (+)
mfsd8l1 mfsd8 coding upstream 760159 17928603 ~ 17941735 (+)
polr2h polr2h coding upstream 775258 17920839 ~ 17926636 (+)
LOC120565156 NA coding downstream 3289 18715754 ~ 18733910 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding downstream 135772 18848237 ~ 18857894 (+)
LOC120565637 ankub1 coding downstream 199422 18911887 ~ 18917474 (+)
ppp1r2 ppp1r2 coding downstream 207673 18920138 ~ 18945814 (+)
LOC120565155 acap2 coding downstream 237735 18950200 ~ 19004281 (+)
G96372 NA non-coding upstream 42013 18659642 ~ 18659881 (+)
G96361 NA non-coding upstream 80552 18619558 ~ 18621342 (+)
G96353 NA non-coding upstream 88634 18613029 ~ 18613260 (+)
G96341 NA non-coding upstream 114929 18586628 ~ 18586965 (+)
G96273 NA non-coding upstream 809496 17891652 ~ 17892398 (+)
G96398 NA non-coding downstream 32051 18744516 ~ 18744857 (+)
G96399 NA non-coding downstream 36655 18749120 ~ 18751861 (+)
G96417 NA non-coding downstream 69729 18782194 ~ 18859921 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding downstream 311818 19024283 ~ 19029464 (+)
G96445 psmd1 non-coding downstream 343876 19056341 ~ 19057812 (+)
nmur1a LOC103368681,LOC104952433 other upstream 36781 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 842483 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2325445 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 2400894 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 3069082 15523929 ~ 15632812 (+)
G96418 tsc22d2 other downstream 70135 18782600 ~ 18785636 (+)
G96513 NA other downstream 818302 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1836534 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2698871 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2842429 21554894 ~ 21557731 (+)

Expression


Co-expression Network