LOC120565637 (ankub1)


Basic Information

Item Value
gene id LOC120565637
gene name ankub1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18911887 ~ 18917474 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811543.1
GACGGATGTACTGGCCATGAAGGTCTTCATCTGCTTTGAGGGCTCCTGTGAGCCTTTTGAAGTCCCTCCAGATCAGACTGTGGGAGCCATGAAGCAGATGGTGAAGGATAACGTTCTGGTGCAACTGTCAGATGGCAGGCAGCAGCAGTACCTGGAGCTGAGCTATGGTGGTGCAGCGCTGCAGGACAGCTGGGCTCTGTGTGACGTGGGCATCACAAGTGGTAGTGCCATCCGATGCCTGATAAAGAGTGAACAAAGGCCTGTGATGCGTGTGTTCAATGCTGTGACAGGAGAAACCTTACCAATTATGGGAAGTGAAGCTCTCCTGCATATGTCCGTTGCTAGATTGAAAACTGTGGTGTCCATGCAAAGTGGCCTCCCTGTCAGCACCTTCAGACTGAGCACACCTGCTGGTGTGCAGCTCTATGACTGCAACCAACTGCAAGACTATGCCGTTGAAGTGGgcACTACTCTCCGTTTGGACACATGGGATGGGTGGGTGGAGTTCCTCCAGGGTTGCCTCCTGGGCCACAGAATGACAGTCCAGAGCTACCTATCGGAGAAGAAGCTGGTAATGAGGTTTCAGCTGCAGGTAGCGCTCTACATTGCTGCCTCTGTAGGCCACCTGGATCTGGCAGGCTGGCTGCTGGAGAGGGGGATGCATGCTGAGAAACCAGTAGGAGTCCATCCATACCGCCAGTGGTGCCACCAAACCGCCCACAGAGACACCGGAAAGTGCCCCATCCACATAGCTGCAGAGAGCAACCAGCTCCTAATCCTCAAACTTTTCATCACCAAGAACCTGTTGACCTTGGGTTGTCGGGACCCTGGAGGTCGGGACCCTTTGAAAGTTGCAATTCAGCATGGTCACAGGGATTGTGTCCGCTACTTAGCCAACAAGCTGTGCTCAGTAGTATCCCTGTCAAACATGTCCCTGCCCATGCGTATATACCTCCAGATAAAACGTTGGGTGAGTTTGGGGCAGAATAGTGCAGCCTCCAATCAATGCCACACCAGTGCTGTCTTCACAGCCAGAGTGGGGGATACATTGCTGGTGGATGGTTTCAACAAGCCAAACATGTCTTCCAAATCCAGGAAAGCTGTGACCAAACCAAGCAGAGAAATCAAGACCAAAGCTTTGCAGCCCTTACCTCCCATCAGCAATTTACTTTCAGTATCACACCTCCCCAGCCTGCAGTCTGGGAACCATGGTGACTTTAAAGAGgtgcaaaaaaaacagagacaagaTGTGAAAAGTAGAGAAGATGGCCTATTGGATAAAACCAGTAAAGATGACAGCAGCTTAAGCAAGTTTATATTGCCGCCAATCACCAGAGAAAGCATTCTAAGGCCAAATTCTTCCCATATTCTGTCTCCGGAGCTCTTCTCTCACCATTGTGGCCGAACACCAAGAGAAAATGCCATATACTGCTTGACTATAGCCAGTACCTTTACAGAGAAGCCTTGGTTGAAACAGATGAGCATAGCACGGACCCTGATAAGAAAGCGTGTCCACATGGCCTGA

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
PREDICTED: protein ANKUB1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811543.1 True 1525 mRNA 0.51 6 18911887 18917474

Neighbor

gene id symbol gene type direction distance location
LOC120566166 pfn2,LOC102788235,LOC101065608 coding upstream 53993 18848237 ~ 18857894 (+)
LOC120565156 NA coding upstream 177977 18715754 ~ 18733910 (+)
LOC120565635 LOC103364550,LOC102304031,LOC101475589 coding upstream 199422 18701894 ~ 18712465 (+)
LOC120565634 NA coding upstream 210520 18689219 ~ 18701367 (+)
LOC120565951 NA coding upstream 226139 18684198 ~ 18685748 (+)
ppp1r2 ppp1r2 coding downstream 2664 18920138 ~ 18945814 (+)
LOC120565155 acap2 coding downstream 32726 18950200 ~ 19004281 (+)
htr2b htr2b coding downstream 126536 19044010 ~ 19051968 (+)
fam43a fam43a,LOC102785697 coding downstream 421392 19338866 ~ 19341056 (+)
LOC120565772 srsf11,LOC103363396 coding downstream 603468 19520942 ~ 19529494 (+)
G96417 NA non-coding upstream 51966 18782194 ~ 18859921 (+)
G96399 NA non-coding upstream 160026 18749120 ~ 18751861 (+)
G96398 NA non-coding upstream 167030 18744516 ~ 18744857 (+)
G96372 NA non-coding upstream 252006 18659642 ~ 18659881 (+)
G96361 NA non-coding upstream 290545 18619558 ~ 18621342 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding downstream 106809 19024283 ~ 19029464 (+)
G96445 psmd1 non-coding downstream 138867 19056341 ~ 19057812 (+)
G96455 NA non-coding downstream 361995 19279469 ~ 19287673 (+)
G96488 NA non-coding downstream 414218 19331692 ~ 19387203 (+)
G96489 NA non-coding downstream 416702 19334176 ~ 19334915 (+)
G96418 tsc22d2 other upstream 126251 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 246774 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 1052476 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2535438 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 2610887 16289823 ~ 16301000 (+)
G96513 NA other downstream 613293 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1631525 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2493862 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2637420 21554894 ~ 21557731 (+)
G97093 NA other downstream 2773423 21690897 ~ 21782000 (+)

Expression


Co-expression Network