actl6a (actl6a)


Basic Information

Item Value
gene id actl6a
gene name actl6a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20810183 ~ 20816886 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811544.1
TTGGACAGCCGCCTCGACGCAGTGTGGCGCCTGCTTGGATTGATCCATGCTAACAAATTCCCTTTGTTGTGATTAACCGTTCAGCGGTTGTGATTCTGCTGTAATAACTTATATTAAGGAAGTTGCTGTTGCGAAAACCTAGAGGATGAGTGGCGGAGTGTATGGAGGCGATGAGGTGGGAGCTTTGGTGTTCGACATTGGCTCATACACTGTAAGAGCTGGCTACGCAGGAGAAGACTGTCCCAAGGCGGACTTCCCCACGGTGATAGGTGTGACCCTTGACCGAGAGGATGGCAGCACACCCATGGAGACGGATGGTGACAAGCCGAGCAAGCAGAGTGGCACCACCTACTTCATTGATACCAACCAGCTGAGGGTACCCAGGGAGAGCATGGAGGTCATGTCTCCGCTCAAGAATGGCATGAGTAAGTGTTgcaTCGTCAAATCGCCCCTGGCTGGAGACTTCATGAGCATGCAGTGTCGGGAGCTTTTTCAAGAGTTAAATGTTGAAATAATCCCCCCTTACATGATTGCATCAAAGGATGGAGTGCGAGAGGGATCACCGGCCAGCtggaagaaaaaggagaaaCTACCTCAGGTCACCCGCTCATGGCACAACTACATGTGCAATTGTGTGATCCAGGACTTCCAAGCATCTGTGCTGCAGGTGTCAGACTCGCCATATGATGAACAGGTTGCCGCACAGATGCCCACAGTGCACTATGAGCTGCCTAACGGCTACAACTGTGACTTTGGGGCTGAAAGGCTGAAGATCCCAGAGGGGCTGTTTGATCCCTCTAATGCCAAGGGACTGTCTGGAAACACCATGTTGGGAGTTGGCCACGTGGTGACGACCAGCGTTGGAATGTGTGACATTGACATCCGTCCGGGTCTGTATGGCAGTGTGGTGGTGACTGGaggaaacacactcattcaGGGCTTCACAGACCGACTAAACCGAGAACTCTCCCAGAAAACCCCTCCGAGCATGAGGCTGAAGCTGATAGCCAACAACACTACAGTGGAGCGCCGGTTCAGTGCCTGGATAGGAGGCTCCATCCTGGCGTCACTCGGAACCTTCCAGCAGATGTGGATCTCCAAACAGGAGTACGAAGAAGGAGGAAAGCAGTGTGTAGACAGGAAGTGCCCTTGATTTGACACCCAACCCCACCCTGTCCATCACCCTCTTTGCCACAAGCTCAACATCATGAGACGCACCTCTGACCCTGGACTCAGGAACACCCacggatgatttttttttttaataattgagtTTCTCTGGGATTTGTGAAGATAAGACAAACCTATACAAAGTAAACTGTTACTATGATGAAATGGGGTTTAAGTTCCTTTGTTTATGTCATTAGTCAGTCTGTTGCCTTATCTTTAGATTGTTGGGAGTTTTGTGGAAACCTTGCATCTTCAAAAAAGTTTTTCTGGAATCCACAAAAGCTTGATCCTATTGTATTTTCTTGGTCCCCCCACTTTAGAAATAGTCTGACATGTCCTGAGGATCATAAAATACCAGCGTGTTGGTCCTAAATGAAGTTTTTGAGCACAATGTGGAAAAACAATTTGTTCTGCAAGGTTTCTGCAGAATATAACGTGCATTTGGAGGAACAACCTCAGTATGAAGGTGAATAATGTCTTCAGTTCATAAGCCTTTTTGTGTAGTAAGCAAGGTAATCAGAGGCAAAGGACAGTCAGTTCTCACCTCTGCTTTTTGGTGTCAAATCAAATAAATCTGTATTTAATTTTCACTTTGCTTGTCATTAGCTACATatggtcttttaaaaaaaaataaagtctgTTTTTGTTAAATGAA

Function

symbol description
actl6a Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization; nervous system development; and regulation of transcription by RNA polymerase II. Predicted to be part of NuA4 histone acetyltransferase complex and SWI/SNF complex. Is expressed in ventricular zone. Orthologous to human ACTL6A (actin like 6A).

NR:

description
PREDICTED: actin-like protein 6B isoform X1

GO: NA

KEGG:

id description
K11652 ACTL6B; actin-like protein 6B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811544.1 True 1825 mRNA 0.47 11 20810183 20816886

Neighbor

gene id symbol gene type direction distance location
mfn1b mfn1 coding upstream 35370 20756787 ~ 20774813 (+)
LOC120565171 LOC104931934 coding upstream 139032 20669336 ~ 20671151 (+)
LOC120565169 NA coding upstream 147485 20652948 ~ 20662698 (+)
vtg2 NA coding upstream 179846 20620595 ~ 20630337 (+)
spata1 spata1,LOC102789799 coding upstream 204846 20598582 ~ 20605337 (+)
ndufb5 ndufb5 coding downstream 3362 20820248 ~ 20824575 (+)
usp13 NA coding downstream 8634 20825520 ~ 20867988 (+)
ccdc50a ccdc50 coding downstream 219391 21036277 ~ 21060839 (+)
LOC120564993 LOC104965956 coding downstream 256232 21073118 ~ 21075438 (+)
p3h2 p3h2 coding downstream 262748 21079634 ~ 21146410 (+)
G96782 NA non-coding upstream 29265 20776558 ~ 20780918 (+)
G96777 NA non-coding upstream 60287 20749212 ~ 20749896 (+)
G96775 NA non-coding upstream 66408 20743067 ~ 20743775 (+)
G96758 NA non-coding upstream 108245 20701439 ~ 20701938 (+)
G96754 ssx2ip non-coding upstream 133446 20674257 ~ 20676737 (+)
G96871 NA non-coding downstream 188845 21005731 ~ 21009310 (+)
G96898 NA non-coding downstream 244786 21061672 ~ 21062304 (+)
G96906 LOC103364786,LOC104920247 non-coding downstream 310177 21127063 ~ 21174307 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding downstream 494026 21310912 ~ 21314520 (+)
G97009 NA non-coding downstream 551232 21368118 ~ 21456800 (+)
prkacba prkacb other upstream 245359 20548999 ~ 20564824 (+)
G96513 NA other upstream 1278506 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2024547 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2145070 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 2950772 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 594450 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 738008 21554894 ~ 21557731 (+)
G97093 NA other downstream 874011 21690897 ~ 21782000 (+)
G97321 NA other downstream 1466760 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1668625 22485511 ~ 22491235 (+)

Expression


Co-expression Network