cluap1 (cluap1)


Basic Information

Item Value
gene id cluap1
gene name cluap1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16278045 ~ 16284985 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811576.1
AGCTTCCGTAGGACAAGTATCAGTTTCCATAGAGACCatctaatacatccatggaatGAACGCCTAGCTCAGATAGCTAACTACAACAACGAAAGAAGAGGAAGCAGTGCATCTTCTGCTGTATAGCGCTGGCAGGTCAAAATGTCCTTCAGAGACTTAAGAAATTTCACAGAAATGATGAGGGCCCTGGGCTATCCTCGGTTGATATCTATGGAGAACTTCAGAACACCAAATTTCACTTTAGTTGCAGAAATCCTAATATGGCTCGTAAAGAGATATGAGCCTCAGATGGACATTCCAACTGATGTAGATACAGAGTCAGACAGAATATTCTTCATCAAGGCCGTGGCCCAGTTTATGGCAACTAAGGCTCACATCAAGGTGAACACCAAGCGTCTCTACCAGGCCGATGGCTACGCAGTAAAAGAGATGCTGAAGATTACTTCAGTGCTGTACAGTGCTATGAAGACCAAGCAGATGGCCCTGGGAGAACTAATCGAGGAGGACAACAGCAAGTTCAAGTTCGACCTCAGCTCAAGGGTTTCAGATCTTAAAGCAGCTCGGCAGCTGGCATCCGAGGTCACATCTAAAGGAGCATCTCTCTATGATTTACTGGGAAAAGAAGTGGACTTAAGGGAAATGAGAACTGCGGCCATTGCTAGACCTCTGGAGATCAATGAGACTGAAAAGGCCCTGAGAGCTGCCATCAAGGAGGTTTTGCAAAGTGTGGAGGAGACGAAAGACATGCTGAGCAACGTTGTTTCTGATGAAACCAGTCTGGACGCTAAGATAGAAAAGAAGAAGCAGGAGCTGGAGAGGAATCGGAAAAGGCTCCAGACACTGCAGAGTGTCAGGCCGGCTTTCATGGATGAATATGAGAAGATTGAGGAAGATCTGCAAAAGCAATATGAAACCTTTGTGGAGAAGTTCAGGAACCTCTGCTTCCTGGAGTCTCAGCTGGATGAATACCATAGGCTGGAGCAGGAGAGGtttgagGAGGCTGAGAACATGATGAGGATGATGCAGCATGTattgagggaggaggaggaggagagggatcTGACGAGGAGTTCCTTGAAAGATGAGGATTCTGACATGGACGTTCCAGAGGACGAAGGTTCAGACAGCGACATGGACGAGAGTCGACCTTCTAAGCCGCGGCCCACACAAAACGGCATCATGGCAGGAAGACGAGCTCGATTCATCGGGAACATGCAGGGTGGTGATAGTGATGAGCCCTCTTTAGCTGTTTCCAGAAGGTCAATCCCTCGTGCCAAAAaacaacaggaaggaaagACTGAAGACAGCGAGATTGATGTGGACgaggatgatgaggatgatgatgaaggcgaggaggaggagggcaagGATTTGGAGGACAACAGTCTGGAGGGCCCAGGGTCTAGGGGTGCTCGCCCCTCCAAGGGGGGCATGAGACCACCTCTGCTGGAGGAGAGCGACAATGACTTCTAAATGAATACAGATGAGCTCCAGCTGTTTTCTGTATTCCAGCTCCGATTAAACCATCTAATTACTTCTGAAACATATGCATTTATTATGTTCCATCATGTTGGTATTGCAACATAGACAATCAAtatagttcatattttttttgtgtttgtgtaaactGTTTACCTTAATAAAATATTAACGATTTAATATC
>XM_039811577.1
GTAGGACAAGTATCAGTTTCCATAGAGACCatctaatacatccatggaatGAACGCCTAGCTCAGATAGCTAACTACAACAACGAAAGAGGAAGCAGTGCATCTTCTGCTGTATAGCGCTGGCAGGTCAAAATGTCCTTCAGAGACTTAAGAAATTTCACAGAAATGATGAGGGCCCTGGGCTATCCTCGGTTGATATCTATGGAGAACTTCAGAACACCAAATTTCACTTTAGTTGCAGAAATCCTAATATGGCTCGTAAAGAGATATGAGCCTCAGATGGACATTCCAACTGATGTAGATACAGAGTCAGACAGAATATTCTTCATCAAGGCCGTGGCCCAGTTTATGGCAACTAAGGCTCACATCAAGGTGAACACCAAGCGTCTCTACCAGGCCGATGGCTACGCAGTAAAAGAGATGCTGAAGATTACTTCAGTGCTGTACAGTGCTATGAAGACCAAGCAGATGGCCCTGGGAGAACTAATCGAGGAGGACAACAGCAAGTTCAAGTTCGACCTCAGCTCAAGGGTTTCAGATCTTAAAGCAGCTCGGCAGCTGGCATCCGAGGTCACATCTAAAGGAGCATCTCTCTATGATTTACTGGGAAAAGAAGTGGACTTAAGGGAAATGAGAACTGCGGCCATTGCTAGACCTCTGGAGATCAATGAGACTGAAAAGGCCCTGAGAGCTGCCATCAAGGAGGTTTTGCAAAGTGTGGAGGAGACGAAAGACATGCTGAGCAACGTTGTTTCTGATGAAACCAGTCTGGACGCTAAGATAGAAAAGAAGAAGCAGGAGCTGGAGAGGAATCGGAAAAGGCTCCAGACACTGCAGAGTGTCAGGCCGGCTTTCATGGATGAATATGAGAAGATTGAGGAAGATCTGCAAAAGCAATATGAAACCTTTGTGGAGAAGTTCAGGAACCTCTGCTTCCTGGAGTCTCAGCTGGATGAATACCATAGGCTGGAGCAGGAGAGGtttgagGAGGCTGAGAACATGATGAGGATGATGCAGCATGTattgagggaggaggaggaggagagggatcTGACGAGGAGTTCCTTGAAAGATGAGGATTCTGACATGGACGTTCCAGAGGACGAAGGTTCAGACAGCGACATGGACGAGAGTCGACCTTCTAAGCCGCGGCCCACACAAAACGGCATCATGGCAGGAAGACGAGCTCGATTCATCGGGAACATGCAGGGTGGTGATAGTGATGAGCCCTCTTTAGCTGTTTCCAGAAGGTCAATCCCTCGTGCCAAAAaacaacaggaaggaaagACTGAAGACAGCGAGATTGATGTGGACgaggatgatgaggatgatgatgaaggcgaggaggaggagggcaagGATTTGGAGGACAACAGTCTGGAGGGCCCAGGGTCTAGGGGTGCTCGCCCCTCCAAGGGGGGCATGAGACCACCTCTGCTGGAGGAGAGCGACAATGACTTCTAAATGAATACAGATGAGCTCCAGCTGTTTTCTGTATTCCAGCTCCGATTAAACCATCTAATTACTTCTGAAACATATGCATTTATTATGTTCCATCATGTTGGTATTGCAACATAGACAATCAAtatagttcatattttttttgtgtttgtgtaaactGTTTACCTTAATAAAATATTAACGATTTAATATC
>XM_039811578.1
AGCTTCCGTAGGACAAGTATCAGTTTCCATAGAGACCatctaatacatccatggaatGAACGCCTAGCTCAGATAGCTAACTACAACAACGAAAGAAGAGGAAGCAGTGCATCTTCTGCTGTATAGCGCTGGCAGGTCAAAATGTCCTTCAGAGACTTAAGAAATTTCACAGAAATGATGAGGGCCCTGGGCTATCCTCGGTTGATATCTATGGAGAACTTCAGAACACCAAATTTCACTTTAGTTGCAGAAATCCTAATATGGCTCGTAAAGAGATATGAGCCTCAGATGGACATTCCAACTGATGTAGATACAGAGTCAGACAGAATATTCTTCATCAAGGCCGTGGCCCAGTTTATGGCAACTAAGGCTCACATCAAGGTGAACACCAAGCGTCTCTACCAGGCCGATGGCTACGCAGTAAAAGAGATGCTGAAGATTACTTCAGTGCTGTACAGTGCTATGAAGACCAAGCAGATGGCCCTGGGAGAACTAATCGAGGAGGACAACAGCAAGTTCAAGTTCGACCTCAGCTCAAGGGTTTCAGATCTTAAAGCAGCTCGGCAGCTGGCATCCGAGGTCACATCTAAAGGAGCATCTCTCTATGATTTACTGGGAAAAGAAGTGGACTTAAGGGAAATGAGAACTGCGGCCATTGCTAGACCTCTGGAGATCAATGAGACTGAAAAGGCCCTGAGAGCTGCCATCAAGGAGGTTTTGCAAAGTGTGGAGGAGACGAAAGACATGCTGAGCAACGTTGTTTCTGATGAAACCAGTCTGGACGCTAAGATAGAAAAGAAGAAGCAGGAGCTGGAGAGGAATCGGAAAAGGCTCCAGACACTGCAGAGTGTCAGGCCGGCTTTCATGGATGAATATGAGAAGATTGAGGAAGATCTGCAAAAGCAATATGAAACCTTTGTGGAGAAGTTCAGGAACCTCTGCTTCCTGGAGTCTCAGCTGGATGAATACCATAGGCTGGAGCAGGAGAGGtttgagGAGGCTGAGAACATGATGAGGATGATGCAGCATGTattgagggaggaggaggaggagagggatcTGACGAGGAGTTCCTTGAAAGATGAGGATTCTGACATGGACGTTCCAGAGGACGAAGGTTCAGACAGCGACATGGACGAGAGTCGACCTTCTAAGCCGCGGCCCACACAAAACGGCATCATGGCAGGAAGACGAGCTCGATTCATCGGGAACATGCAGGGTGGTGATAGTGATGAGACTGAAGACAGCGAGATTGATGTGGACgaggatgatgaggatgatgatgaaggcgaggaggaggagggcaagGATTTGGAGGACAACAGTCTGGAGGGCCCAGGGTCTAGGGGTGCTCGCCCCTCCAAGGGGGGCATGAGACCACCTCTGCTGGAGGAGAGCGACAATGACTTCTAAATGAATACAGATGAGCTCCAGCTGTTTTCTGTATTCCAGCTCCGATTAAACCATCTAATTACTTCTGAAACATATGCATTTATTATGTTCCATCATGTTGGTATTGCAACATAGACAATCAAtatagttcatattttttttgtgtttgtgtaaactGTTTACCTTAATAAAATATTAACGATTTAATATC

Function

symbol description
cluap1 Acts upstream of or within cilium assembly; kidney development; and photoreceptor cell maintenance. Predicted to be located in cell projection and nucleus. Predicted to be part of intraciliary transport particle B. Predicted to be active in centrosome and cilium. Orthologous to human CLUAP1 (clusterin associated protein 1).

NR:

description
clusterin-associated protein 1

GO: NA

KEGG:

id description
K19684 CLUAP1, DYF3; clusterin-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811576.1 True 1663 mRNA 0.46 14 16278045 16284985
XM_039811577.1 False 1653 mRNA 0.46 14 16278052 16284985
XM_039811578.1 False 1603 mRNA 0.46 13 16278045 16284985

Neighbor

gene id symbol gene type direction distance location
slc5a5 slc5a5,LOC104958014 coding upstream 2350 16256858 ~ 16275695 (+)
LOC120565304 b3gnt3 coding upstream 52583 16216296 ~ 16225462 (+)
LOC120566178 LOC103355552 coding upstream 64492 16209374 ~ 16213553 (+)
LOC120565120 NA coding upstream 73300 16174908 ~ 16204745 (+)
ndufa7 ndufa7 coding upstream 104476 16170463 ~ 16173569 (+)
ccdc124 ccdc124 coding downstream 713 16285698 ~ 16288901 (+)
uhrf1 uhrf1,LOC102797162 coding downstream 16938 16301923 ~ 16317498 (+)
LOC120565628 NA coding downstream 173202 16458187 ~ 16459800 (+)
ptprsa LOC103355422,LOC108234298 coding downstream 641634 16926619 ~ 17177885 (+)
tbxa2r NA coding downstream 921785 17206770 ~ 17217790 (+)
G95952 NA non-coding upstream 108201 16166202 ~ 16169844 (+)
G95929 NA non-coding upstream 150105 16070354 ~ 16127940 (+)
G95877 NA non-coding upstream 296547 15980690 ~ 15981498 (+)
G95876 NA non-coding upstream 297419 15979752 ~ 15980626 (+)
G95873 NA non-coding upstream 303695 15973181 ~ 15974350 (+)
G96070 NA non-coding downstream 218160 16503145 ~ 16503811 (+)
G96075 NA non-coding downstream 307891 16592876 ~ 16593182 (+)
G96076 NA non-coding downstream 391222 16676207 ~ 16676577 (+)
G96086 NA non-coding downstream 486984 16771969 ~ 16772170 (+)
G96088 NA non-coding downstream 592891 16877876 ~ 16878081 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 645233 15523929 ~ 15632812 (+)
dennd1b NA other upstream 1354200 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 1573692 14689382 ~ 14704353 (+)
G95460 NA other upstream 1656632 14619358 ~ 14621413 (+)
LOC120564965 LOC102299696 other upstream 2878301 13390823 ~ 13399744 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 4838 16289823 ~ 16301000 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 35509 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 1570646 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 2361718 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 2497615 18782600 ~ 18785636 (+)

Expression


Co-expression Network