LOC120565669


Basic Information

Item Value
gene id LOC120565669
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4439340 ~ 4443524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811594.1
TACAGCAAAGCAGAAGTTGGACATCACTGACTTTATACCAGCGGACCCAAAGCAGCATCAAGAGCAGAAACCAGCCGAATATTTAGAGAACTACTGAGTCAAGGAAACAGCTGAATGATGAGTGCTGCTCAGAGTCAAACACTGGAGTCCAAACTGGAGGCCCTGCAGTGCCACTTCACCTGGAATCTGGAGACCAGCAAGTCCATACTGTTACATCTAAGAGACCACCTGGAGGACATCGGCACCGAGGAGGGGAACAGCTGGCTGGGTCACATTTACAACCTGCGGGGGTTCGTTCAGTACAAGCTGGGGTTCACCGAAGATGCCCAGAGTTTCTTCAACAAGGCTGCAGAGGCCTTCAGCAAGATAAGAAACGCAGATGAGGGTCCCTGGTTGGTGGTGAACTACGGGAACCTGGCGTGGCTGCACCACCACCTGGGAGACCAAGCAGAGAGTCAGGCTTACCTGTCGAAGGTCAACGCCCTGATGAATAAATACCCATCTCCATCCCAGGACCAGCTCCATCCAGAGATCTACGCTGAGAAAGGCTGGACCCTGATGAAGTTCAGCGGAGAACAAAAGAAAGAGGCTGCAGATTACTTCCAGAGAGCCATCAGGATGCAGCCGGACATGGTGGAGTGGAACACCAGCTACGTCTTAGGGTTAGTGGGTACTTGTGATaagagagacacagagcagGTGGCTGACCTTCTGGAGCAAATGAGAGTGGCCAAGGAACAGGATCCAGAGAACTTGTTCCTCGCTGCTCACTACTTAACTCTACGTGTTGACCACGGAGAAGAAATCGAAGATGAAGCACGTGAGTTAGCCACAAAGGTTTTGAGAAATCCTGTCGGCAGCTACAGTGGTATTAGACCACTACTAAAGGTTTACAGTTATTATGTTTCTATTGATGAGGCCATTGATTTGGCAGAGGAGGCTCTGAAAACCCATCCAGATGAGCGTTATCTGAAGAGGTGTGCTGCACACTGCTACAAATTCAAGCTCATTTATTTTAGGGACAGTCGCCCAGAGAAAAGCGTGATAGACAGAGCAATCAGTCTCCATAAAGAGGTGATTGCTCTCTACCCTGATTCTTCACTTGTAAATAAAATAGACCTTGCAAGTATATACGCAAAGTTAAATTACAGCCAGGATGAAGCTGAGCAGATATACCAGGAACTGCTAGAAAGTGATCTGGAACCTGCAGACAAACAGAGGATTTACAACAGCTACGCAAAATATTTATACTTCTATGAACAAGACAGCAAAGGTTCAGTACGATATCACATGAAGGCGGCAAAGATACCGCTAAAAAGTAACTATAGGAAGACCAGCATCAAAACCCTGAAGAAGATTAGAGACAAAGGCAGGAGCCACATGTGTAGAGAAATAACGAAGTTTCTGGCAAACCTGCAAGAGCcatagtgtttttaaaagcACTGGTTCTTAATCCAGATTAAGTGtaggtacatactgtacattacattattttgaTTACAATCATCAGGAAAACCTGTTTCCTTCTGTTGGTCTGCTGGTCCAGAAGCAGCAACACCTTATTCAGAACATGTACGATCAACtcgttgttggttttggtcttttcatggttAACACAAAGATATGTATCATATACAGCCAACTGTCTGCTCTTTAGTACAGTTAATAGAAGACAAAggctgttatgtgtgtgtttttatgtgtgcacCATAGTGTAGCACTTTTAATTTTGTTGTATGTacttacaatgacaataaagtcaattctgattctgattcaaaataaaattacCTTTAACATTGACTCTGAAAACCTGTCAGCAGTAGTACACtagatctgtaccaaacaagcTGAATCATTTAATAACACTGGTCCTTTAAATAAGATCCACTGTGGACAGTTCAGATGTCATTACATGATTAATTaaaattagtgctgtcagttaaacgcgttattaatgGCGTTAACGCAAatccattttaacggcgtacatttttttatagcgagattaacgttctttt
>XM_039811596.1
TACAGCAAAGCAGAAGTTGGACATCACTGACTTTATACCAGCGGACCCAAAGCAGCATCAAGAGCAGAAACCAGCCGAATATTTAGAGAACTACTGAGTCAAGGAAACAGCTGAATGATGAGTGCTGCTCAGAGTCAAACACTGGAGTCCAAACTGGAGGCCCTGCAGTGCCACTTCACCTGGAATCTGGAGACCAGCAAGTCCATACTGTTACATCTAAGAGACCACCTGGAGGACATCGGCACCGAGGAGGGGAACAGCTGGCTGGGTCACATTTACAACCTGCGGGGGTTCGTTCAGTACAAGCTGGGGTTCACCGAAGATGCCCAGAGTTTCTTCAACAAGGCTGCAGAGGCCTTCAGCAAGATAAGAAACGCAGATGAGGGTCCCTGGTTGGTGGTGAACTACGGGAACCTGGCGTGGCTGCACCACCACCTGGGAGACCAAGCAGAGAGTCAGGCTTACCTGTCGAAGGTCAACGCCCTGATGAATAAATACCCATCTCCATCCCAGGACCAGCTCCATCCAGAGATCTACGCTGAGAAAGGCTGGACCCTGATGAAGTTCAGCGGAGAACAAAAGAAAGAGGCTGCAGATTACTTCCAGAGAGCCATCAGGATGCAGCCGGACATGGTGGAGTGGAACACCAGCTACGTCTTAGGGTTAGTGGGTACTTGTGATaagagagacacagagcagGTGGCTGACCTTCTGGAGCAAATGAGAGTGGCCAAGGAACAGGATCCAGAGAACTTGTTCCTCGCTGCTCACTACTTAACTCTACGTGTTGACCACGGAGAAGAAATCGAAGATGAAGCACGACGGTGATGGACGTTAATCAAACTACAACTTTGAAAAGCTGCTGCCAAATAGTTGTTTTTGCTTTCAACTTTTAAGGAACACAGATGAGCATTAAACACATT

Function

GO: NA

KEGG:

id description
K14217 IFIT1; interferon-induced protein with tetratricopeptide repeats 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811594.1 True 2021 mRNA 0.44 2 4439340 4442204
XM_039811596.1 False 923 mRNA 0.50 3 4439340 4443524

Neighbor

gene id symbol gene type direction distance location
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 19559 4408643 ~ 4419781 (+)
LOC120564977 zgc:110434,LOC102204254,LOC103462478,LOC107386469,LOC101485372,LOC103381127,LOC103379246,LOC103395676 coding upstream 64586 4373826 ~ 4374754 (+)
LOC120565398 LOC108262407,LOC104935308,LOC104932967 coding upstream 72779 4366122 ~ 4366561 (+)
LOC120565392 LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799 coding upstream 94211 4344659 ~ 4345129 (+)
LOC120565402 LOC106958509,LOC103391927,LOC106963510,LOC107690788 coding upstream 277898 4160909 ~ 4161442 (+)
LOC120565674 NA coding downstream 71528 4515052 ~ 4519593 (+)
LOC120565681 NA coding downstream 155948 4599472 ~ 4603153 (+)
LOC120565686 LOC104953734 coding downstream 214237 4657761 ~ 4662185 (+)
niban1a LOC104958505 coding downstream 271131 4714655 ~ 4784151 (+)
mettl11b mettl11b coding downstream 409424 4852948 ~ 4873356 (+)
G93281 NA non-coding upstream 25419 4413261 ~ 4413921 (+)
G93191 NA non-coding upstream 62810 4354742 ~ 4376530 (+)
LOC120565406 NA non-coding upstream 98742 4332961 ~ 4340598 (+)
G93170 NA non-coding upstream 139582 4281451 ~ 4299758 (+)
G93169 NA non-coding upstream 156045 4282869 ~ 4283295 (+)
G93294 NA non-coding downstream 16747 4460271 ~ 4465434 (+)
G93293 NA non-coding downstream 17605 4461129 ~ 4467311 (+)
G93288 NA non-coding downstream 52529 4496053 ~ 4502052 (+)
G93286 NA non-coding downstream 57025 4500549 ~ 4505974 (+)
G93308 NA non-coding downstream 148852 4592376 ~ 4606793 (+)
LOC120565391 NA other upstream 125825 4284755 ~ 4313515 (+)
G93150 NA other upstream 221514 4174602 ~ 4217826 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 615558 3714919 ~ 3823782 (+)
G92848 NA other upstream 832515 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 843952 3540034 ~ 3595388 (+)
trmt1l trmt1l other downstream 241700 4685224 ~ 4713233 (+)
G93613 NA other downstream 1591845 6035369 ~ 6051520 (+)
G93638 NA other downstream 1758561 6202085 ~ 6214017 (+)
rhpn1 rhpn1 other downstream 1911368 6354892 ~ 6381598 (+)
G93938 NA other downstream 2906286 7349810 ~ 7350587 (+)

Expression


Co-expression Network