ncl (ncl)


Basic Information

Item Value
gene id ncl
gene name ncl
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17864337 ~ 17875307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811629.1
GAGCGCGACTTcgttttctctgtctttcctgTCCAATGTCCCACAGAGCAGGCTGATCCACGTGTATACGTTAGCTATTTCGTAAATTGTTTCCAAACGTCCAGTTACTCGTGTTTCATTGAAACACACAACAGCACCATGGTGAAACTAGCAAAGGCAGCAGGCAAGCAAGCAACACAGAAGAAAAAAGCCCCTCCACCCCCCAAAGAAGTGGAGGAGGAATCTAGTGAAGAGGACAGCAGTGATGAGGAAGAGACTCCTCCCCCTAAAGTGGTGAAGAAAGCCACACCAGCGAAAGCTACACCAGTCGTTAAAAATGGTGCTGCTGCCAAAAAAGCAGAAAGTgaggatgatgaggatgatTCTGAGGAGGAGTCTGAAGAGGAGACCCCCCCACCAAAAAAGACTCCTGCAAAGGCTAAACCTGCACCAGCCAAAGCAGCTCCTGCAAAGGCAGAGgagtctgatgatgatgatgaagaagacGACGATGAATCTGAAGAAGAGACCCCACCACCCAAGAAGGCTACTCCAGCTAAACCAGCTGCCAAGCCCCCAGTGAAGGCTAAACCTGCGAAGGAGTCTtctgatgaggatgaggatgatgacTCAGAGGAAGAGGCCCCACCTCCCAAAAAGACTACTCCAGCTAAACCAGCTGCCAAACAAGCTGCAAAGGCTGCCAAAGAGGAGTCTGACGACGAcgacgatgatgatgaagatgATTCTGAAGAGGAGATGGACACCACTCCTGCTCCAGCAAAGGCAAAGAAAGCCGGCATGGTCAAGGCCAAGGAAGAATCagaggaggatgatgatgaagacgatgacgacgatgatgatgaggaAGAGGAAGCCCCAGTGACTCCTGCAAAGAGGAAGGCAGAGGGCAAGAAGGACACACCTGCTGCCAAGAAAGCAAAGGCAGAAGGCGATGGGTTCTGTCTATTTATTGGAAACTTGAACTCCAACAAAGACTTTGAAGAAATCAAGGAAGGCCTGAGAAAATTCTTCTCCAAGAACAGCCTTGAGGTCGCTGATGTCAGATTGGGTGGATCCAAGAAATTTGGTTATGTGGATTTTGCATCTGAGGAAGACATGCAGAAGGCACTGGAGCTTAATGGCAAGAAGGTTATGGGTCAGGAGTTGAAGTTGGACAGGGCCCGAAGCAAAGACAGCTCACAGGAGGGCAAGaaagAGCGAGATGCACGGACACTGTTTGTGAAAAACCTTCCCTTCTCTGCAACGGCTGATGACCTGAAGGAAGTCTTTGAAGATGCAGTTGACGTCCGGTTACCTCCAGGCCAGAACGGTTCAAACAGGGGCATTGCCTACATCGAGTTCAAAACTGAAGCTGAAGCGGAGAAGATGCTGGAGGAGGCTCAGGGAGCCGATGTCCAAGGGCGCTCCATCATGGTCGACTATGTTGGAGATAAGAGCCAGAAAGGGTCCATGGTGGCAGCGTCAGGAGCAGCCAGTAAAACGCTGGTGGTGAATAATCTGGCCTTCACTGCCACAGAGGAAGCCCTGCAATCCACATTTGAGAAGGCAGTCTCCATTAGGATTCCACAGAGAGATGGCAGACCTAAAGGTTTTGCTTTTGTAGAGTTTGAGAGTACAGAGGATGCCAAGGACGCTCTGGAAAACCTCAACAACACAGATATTGAAGGCCGGTCGATCCGACTGGAGTACAGCCAGAACAGTGGCAGGGACGGGGGCAGAGGAAACTCGGGTCCAACAAAAACCCTCTTCGTCAAGGGTCTCTCTGAGGACACAACAGATCAGACCCTCAAGGAGGCGTTTGAGGGTGCTGCAGCAGCCAGGATAGTCACGGACAGAGAAACGGGCTCATCAAAAGGCTTTGGCTTTGTGGACTTTCACAACGAGGACGACTGCAAGGCAGCCAAGGAGGCCATGGAGGACGGCGAGATCGATGGCAGCAAGGTGACCCTGGACTACGCCAAGCCCAAGGGTGAAGGCGGCTTCCGTGGAGGTCGAGGTGGAGGGTTTGGCGGCCGCGGCGGTGGCAGAGGAGGTCGTGGCGGTTTTGGCGGCGGCGGATTTGGAGGTGGATTTGGCGGCCGAGGTGGTGGTGGCAGAGGAAGGGGAGGCCCCCGTGGAGGTGGACGCGGACGTGGTGGCGGCTTTGGAGgtGGAAGAGGTGGCGGAGGATTTGGAGCCAAACCCCAGGGGAAGAAAATCAAGTTTGATGACTAAATCCTTAGTCTATTTTACTTTTTGAATGGACTCTGGTTTCATCACTTTTCAGAGCTTTTGGACATTCCAGAAAGCGTCattgatatatatttaactgttAATGGGCATTTTAGCCCTTTATTTAGGACCCCTCAAACCTTCCCCATCCTTGTGTGCCAGAATGGTACTTTTGACCTTCTCAGCTGAAGTGCTTTGTGAGTACTGAATGTCCCAAATGCGAACCTGTACCTCTCGCCCTCATTAGTTTACTTGCTTTTTCGAAGGAGTAAAATGGAACGGGTCTGGCAAACAAGTTTGCTGTAATAAAATACGCTTGTCTATGTCAGATACATTGTGTAAATTTAAACAGTTTGTATGATTTCATTTTacctttttgtaaaaaaaatacacttgtatccatatgattttgtttttttgtttttactttgtcATTTAGTTTGCTTTAGCTGCCACGTTTTACtgtaatgtgcaaaacatatttTGATAGATGATGATTTGAGTCAGTGCTCCAAGAGTTGGATGTTAAGGAAATGGCAAAGGTGTTCTGTCATGTTTGTTTGGTGGGGCACAGTCGGTGTCACAGAGGATGACGTACCTCTTCTCTATGTAACATAAAATATTTGTAGTGCattgacaaatgtttttttttccccatcggAGAATCTTAAGATTTTCACGTGATTAAATAAAACCTTGTAGGTGGtgatttttaaa

Function

symbol description
ncl Predicted to enable mRNA binding activity. Acts upstream of or within heart looping; rRNA processing; and rRNA transcription. Predicted to be located in nucleolus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Is expressed in cardiac ventricle. Orthologous to human NCL (nucleolin).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K11294 NCL, NSR1; nucleolin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811629.1 True 2931 mRNA 0.48 16 17864337 17875307

Neighbor

gene id symbol gene type direction distance location
srek1ip1 srek1ip1 coding upstream 110503 17749432 ~ 17753834 (+)
LOC120565631 LOC103364917,LOC104953203 coding upstream 396827 17370102 ~ 17467510 (+)
kif14 kif14 coding upstream 495247 17344165 ~ 17369090 (+)
ddx59 ddx59 coding upstream 520788 17337825 ~ 17343549 (+)
si:zfos-943e10.1 LOC103364910,LOC104945262,LOC104928005 coding upstream 608789 17236374 ~ 17255548 (+)
polr2h polr2h coding downstream 45532 17920839 ~ 17926636 (+)
mfsd8l1 mfsd8 coding downstream 53296 17928603 ~ 17941735 (+)
LOC120565952 NA coding downstream 806763 18682070 ~ 18683397 (+)
LOC120565951 NA coding downstream 808891 18684198 ~ 18685748 (+)
LOC120565634 NA coding downstream 813912 18689219 ~ 18701367 (+)
LOC120565502 NA non-coding upstream 165289 17670680 ~ 17699048 (+)
LOC120564955 NA non-coding upstream 227617 17620798 ~ 17636720 (+)
G96202 NA non-coding upstream 441059 17423065 ~ 17423278 (+)
G96160 LOC100701835,LOC102794991,LOC101468118,LOC101061816 non-coding upstream 603307 17257393 ~ 17261030 (+)
G96088 NA non-coding upstream 986256 16877876 ~ 16878081 (+)
G96273 NA non-coding downstream 16345 17891652 ~ 17892398 (+)
G96341 NA non-coding downstream 711321 18586628 ~ 18586965 (+)
G96353 NA non-coding downstream 737722 18613029 ~ 18613260 (+)
G96361 NA non-coding downstream 744251 18619558 ~ 18621342 (+)
G96372 NA non-coding downstream 784335 18659642 ~ 18659881 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 4926 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 1487888 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 1563337 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 2231525 15523929 ~ 15632812 (+)
dennd1b NA other upstream 2940492 14810368 ~ 14923845 (+)
nmur1a LOC103368681,LOC104952433 other downstream 771396 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 907293 18782600 ~ 18785636 (+)
G96513 NA other downstream 1655460 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 2673692 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 3536029 21411336 ~ 21441558 (+)

Expression


Co-expression Network