cth (cth)


Basic Information

Item Value
gene id cth
gene name cth
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19574855 ~ 19586645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811659.1
TCACCATCCTTCGGTAATGCACACTCATCCTCAGTTCACTGCGGTATACGTTTAGGGGAGCACGCGCCATGGATCAAAATCACAAACAAGACGAGCAGAGCGACTTGTTCGCCGGCTTTAGTTCGGGGTATAAATCGTTCGCCACAGAGGCAATTCACGTTGGCCAAGAGCCGGAGCAATGGAAATCAATGGCTGTAGTGCCGCCGATTTCCCTATCTACAACATTCAAGCAGCTCGGACCAGGAAACCACGCCGGGTTTGAATACAGCCGGAGTGGAAACCCTACAAGAAACTGTCTTGAGAAGGCGGTGGCTGCTTTGGATGGAGCAAAGTATTGCATTGCTGTTGCCTCGGGCCTGGCAGCCACAGTGACCATCACTCACTTGCTTAAGGCAGGTGATGGAATCGTCTGCATGGACGACGTGTACGGAGGCACAAACCGCTACTTCCAAAGAATTGCCGTTGAACTTGGTCTGAAGGTGTCTTTTGCTGACTGTACAAAACCAGAGCTGCTGGAGGCTGCTCTGAAGGCCAACACTAAACTGGTGTGGATTGAGACACCCACCAACCCCACAATGAAGGTTGTTGACATCAAGGCCTGTTCTGAGGTGGCCCATAAATACAACAAAGACATAGTGGTGGTCGTGGACAATACCTTCATGTCTGCCTTCTTTCAGCGCCCCTTGGCTTTGGGAGCTGATATCTGCATGTATTCAGCTACCAAATACATGAACGGTCACAGTGACGTGGTAATGGGTCTGGCCTCAATGAACCGGGATGATCTGTATGAGCGACTGAAGTTTCTGCAAAATGCACTGGGCTGTGTACCATCTCCCTTCGACTGCTTCCTATGTAACCGAGGACTGAAGACCCTACACCTGCGAATGGAGCGGCACTTTAGGAATGCCATGGCTGCCGCCAAGTTTCTGGAGGCAGATCCCAGGGTGGAGCAGGTCCTCTTCCCAGGCCTGCCCTCTCACCCCCAGCATGAAGTGATGAAGAGACAATGCACCGGATGTCCGGGGATGATTACCTTCTACATTAAGGGAAAACTGGAGCACGCCAGCACCTTCCTCAGTAACCTCAAAttgtttGCGATAGCTGAGAGTCTTGGTGGTTATGAAAGTTTAGCAGAACATCCGGCAATTATGACCCATGCATCAGTGCCAGAAAACGAGAGGAGAGTCCTGGGGATCAGTGACACACTCATCCGACTCTCCGTGGGCCTGGAGGATGAGGCTGACATCATCGAAGACCTGGAGCAAGctcttgctgctgctCATCCAAAGAAGAAGTGAAATGTCTTCAGGGCATCCTCGAGGCTGAGGTTGAAATCAATCGAAGTCGAGATGAAGACTGGAGGTACCTGAAGTCTCAAATCATCGCAGATCAACACTTGGTACCTCCATTCAGCGCACAAGCAGCAGAGATACAACTATCAGGGAACAACttgttctttaaaaaataaaaatcgtgCTATCTGTGAATACTTAACACAATTTTTACATGAGAATCTTTTTAATGCCTATTTTACTAGAACATCAGTTAAGTAATCGTATTTATCTTATGCTGGGTTTTGCTTTGTTTTAcgtttggttttgttttgtttggaagGCTTTAATCGGCTGTAGTCCTATTCATTCAAGGCTGATACAGTATACGTTTCTGcaggaaaaacaaacacactttcTGTATAATCTTGCTATAAACCTACTTCGGGCTGCAATCTAGTTTTGATACACAGAACAGTCTCCAAATGTAACTGCCCCAAGTACAACTGCAGCTGTAATCTGTATTAATAATTTCCTAATTCTAGCTGGCAAAGCTTCCTCTGTAAAAGAGGTAAGCACGTATTAAGGATGTCTCATTAATCAGATGAACCAGACTCACATGGCAAAGTTAATGTCCCCACCTACTGTCCAAAAGTCAAAAACTCTTTAATGTCAACATCTGCTCAAAGATTTGATGctttttcagaaacatttaaataattttatgaAGAACAAACAATAtctccattcatcattaatataaatttgtgtatttggttgcaGAATGTTAATATTATGCTTCATCAAGTGTATGCCTTgtaaagaagaggagaggaatcCTATTCCTCACATTTGAGACTAATCGGGATATTTGCCAATAAATGAGGGAGTGTTTGGTAAGCACATGCCTTTATTTGGAGCACAATTTCCCAGCATTGATATGAGGTTTTTATAATAACAACTGAAGGTTATTATAGGAGTATTTCTCAGAATAAAGTTTGATGACACACTTGATGTGTGTTCTTGAACTCAAGTCAAAGCGTTTGGGCcaatgaccaaaaaaaaaaaaaaaggtcagaatTTGCATGTTTTGTATCTGCAGAGAAAAATGTTTCACTCAGGCACTTCCACCTGCTGCTCTCCCACACTTCATTTGGGACAGACCATTCACCATCAATGTCATGTATGTAACTGACAAATCCATTAAAATCAGTTTGCAGTATAA

Function

symbol description
cth Predicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Predicted to act upstream of or within cysteine biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and cystathioninuria. Orthologous to human CTH (cystathionine gamma-lyase).

NR:

description
PREDICTED: cystathionine gamma-lyase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811659.1 True 2496 mRNA 0.44 12 19574855 19586645

Neighbor

gene id symbol gene type direction distance location
LOC120565772 srsf11,LOC103363396 coding upstream 45361 19520942 ~ 19529494 (+)
fam43a fam43a,LOC102785697 coding upstream 233799 19338866 ~ 19341056 (+)
htr2b htr2b coding upstream 522887 19044010 ~ 19051968 (+)
LOC120565155 acap2 coding upstream 570574 18950200 ~ 19004281 (+)
ppp1r2 ppp1r2 coding upstream 629041 18920138 ~ 18945814 (+)
adgrl2a adgrl2,LOC106923620 coding downstream 569765 20156410 ~ 20256594 (+)
samd13 samd13,LOC103130842 coding downstream 978330 20564975 ~ 20568112 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding downstream 989878 20576523 ~ 20582264 (+)
LOC120565357 NA coding downstream 995861 20582506 ~ 20587615 (+)
rpf1 rpf1 coding downstream 1001653 20588298 ~ 20595439 (+)
LOC120565771 NA non-coding upstream 63647 19387232 ~ 19511208 (+)
G96488 NA non-coding upstream 187652 19331692 ~ 19387203 (+)
G96489 NA non-coding upstream 239940 19334176 ~ 19334915 (+)
G96455 NA non-coding upstream 287182 19279469 ~ 19287673 (+)
G96445 psmd1 non-coding upstream 517043 19056341 ~ 19057812 (+)
G96613 ptger3 non-coding downstream 90523 19677168 ~ 19683076 (+)
G96610 NA non-coding downstream 97505 19684150 ~ 19685085 (+)
G96616 NA non-coding downstream 164475 19751120 ~ 19751372 (+)
G96648 adgrl4 non-coding downstream 414183 20000828 ~ 20002125 (+)
LOC120565691 NA non-coding downstream 460373 20047018 ~ 20047372 (+)
G96513 NA other upstream 43178 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 789219 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 909742 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 1715444 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 3198406 16320494 ~ 16376449 (+)
prkacba prkacb other downstream 962354 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 1824691 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 1968249 21554894 ~ 21557731 (+)
G97093 NA other downstream 2104252 21690897 ~ 21782000 (+)
G97321 NA other downstream 2697001 22283646 ~ 22287272 (+)

Expression


Co-expression Network