XLOC_004690 (ca10a)


Basic Information

Item Value
gene id XLOC_004690
gene name ca10a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 21298317 ~ 21553637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009292
TGTGCTTCAAGATATCTACCTTTAGCGTTTGGAAGCCTACTACGCGACCAATTAGCCTATAATGCGCATTCTTGTTTATTGGCAACCTATACGactgcgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgtacaCCAGTGCTCCGTCCACCTGTGCCTAGGTAACGTGATCACGCAATTAATGGCGGGAACGCGCACTCTGTTTCAGTGGTCCGCGTACCCGTTGCGCGCAGTAGTTCACCTCGGGGATTTCAGGAAATCTCAATATCTGTCTATTTCTTGCATGACTGGACTGGGATTTCAGTTGTTTTTTAATCTTTAGGTTCTTAAACTGTCGCATGGTGACAGGGTCAGACCAACGGAGACAGGCATCTTCGTGGCGTAACAAAAGCGGTTCTGGAACAGCAAACAACGCTTAAGTCGTTTTATGGAGGCTTGCGGGACGCAGCGAAACATTTCGTAAAGTGCGCGCACTGAGGATATCAGTCCAGACCCCCTTTATTTCGGAACGTAGTCTTGTTTGGATTTCAGCCGGTTTGAAATGTGGCGTTATGTCCTCGAGATAAATGTGCTATGTGTGTGATTTGGAGAGGATCTTGTGGAAGGTGTCCAGTGGGAAAGAGACTGGGTGGACTCATCTGCAACTGATCCCCGTTTTTCTGAGCGCAATGGACTTGGAATGAAGACAAAACATGGATataatctgggaaatatttattattcttcaaGCCAATCTCATTGTTTGCACTTCAGCTCAGCCAAATCCACCCAAAATCCATGAGGGATGGTGGGCTTACAAAGAAGTTGTTCAGGGGAGCTTTGTTCCAGTGCCATCATTCTGGGGGCTTGTAAATTCAGCTTGGAATCTGTGTTCTGTGGGGAAGAGACAGTCTCCAGTCAACATCGAGACCAGCCATATGATATTTGATCCCTTCCTGACACCACTGAGGCTCAACACTGGCGGCCGAAAGgttggagggacaatgtacaacaccGGCCGCCATGTTTCACTCCGACTGGACAAAGAGCACCTGGTGAACATCTCCGGTGGACCAATGACCTACAGCCATCGCCTTGAGGAGATCAGGTTACACTTTGGGAGTGAGGACGGACAGGGCTCAGAGCATCTCCTCAATGGCCAGGCCTTCTCTGGGGAGGTGCAACTTATACATTACAACCATGAACTGTACACAAACTACACAGAAGCTGCTAAAAGTCCAAATGGCTTGGTGATAGTGTCTATATTTATGAAGATATCTGAGACTTCGAATTCATTTCTCAATCGGATGTTGAACAGAGACACTATCACAAGAATAACATACAAGAATGATGCATACCTTCTCTCGGGGCTAAACATTGAGGAGGTGTATCCAGAGACAGCAAGTTTTATCACTTACGAAGGGTCTATGACAATCCCACCATGCTACGAGACCGCAACGTGGATTCTGATGAACAAGCCAATCTACGTCACAAAAATGCAGATGCACTCCATGCGACTGCTAAGTCAGAATCAGCCCTCGCAGATATTCCTCAGCATGAGCGACAATGTTCGCCCAGTGCAGCCTCTGAACAACCGCTGCATTCGCACCAACATCAACTTCAGCATGCAGGGCAAGGACTGCCCCAACAACAGGGCACAGAAGCTGCAGTACCGAGtgaACGAATGGCTGCTGAAATAGAGCCAGGATGCAGACCAACCCAAGAACACTAACAACATTGAAAAGGATGAAGAGGAAAAGCTCATGGATAAACAGAATGAAGACTGACACATGTCCTGCCAGAAAAAGTCATGatgttgtaaagaaaaaaaaaaacaaaaacaccactGCAAGAAGAGACTCTGCAAAGTTGGCAAAGAGTTCCAATTTCATACATCCAATCAAAACCAATGACATACCtacacaaatgttttgataccttTTTTTGGGAaagcaaacaaaatatatatatataacatgtattTCATAGGCTCTTCACGTATTGAACTGAATGTTTTTAGCCTTTGTACATATGGACAACTTGCTACCAATCTTGGGATAAAGGGACAGGACATTGAAGCACCCTACCAATACTGAGACATCCTTGAACATAACTGCATTCTCAATCTTTATTCTGGCTCGTGCTGTGGAGAACCGGAGCAGAGGCAGCCTTGCAGATTTATTATCAAGACAAAAACCATCATAAAGAAGACTACGGCGTGATGTTGTCcgtggagaaaaaaaagaaagtgtctTGGCCTTGTAAATATAATTATTCATGCTGAAAATGAAtatgtaaagataaaataaacatttaaaaaaaataataatatcagaaggaaaataaatgaaaaaaaaaagttgaatattttACGCTTGGCGCACTTTCTGGAGCAGAGCTGAtgcctttttttctgtttcattgTTTACAATGGTCATACACTGTGTTTGATTAATGTTATCGGCCCAATAAATGTGTTTGGAAAGttcattttttgtaaatatttttctctgtgtttggctGCTCATGTTAATATGCAGtacaaaactttaaaaagagGGGGAAAACATCCGCTGTGTTTGGTGCGAACATCTTAAGAGCTGCTTAGAAGTGAATTGTTCTATTTTTGACTGAAATCAAACTAAATATCTGTTTAATGAGGCTGACGATGGTTGCAGAAACACTGCAGTGTTGATTTGCTGTGGATTTGTGTGGCGTCAGCGAGTGAAAGCTTCATTGATCGCCCACACCACCTTTTGGTTTAATTATATCTCAATCAATGAAGCATACCTCCTGTTTTAACCCCGCTGTGAGCAAAAACACGGCCTGTGATTCTAGTATTTTATCATGGTAGTGCACAGATGGCTAATAAAAAGATAACAAGAGGCAGAAAGTTTCAACAGCAAGCGCTCCTGGTTACTGTGGCCATTTTTCCACCAGGCCTGCAGTTGAAACCAAATTAAGCCTTTTGATAGATAAATACCGGCTGTGTTTTACTCTTGAAAAGTAATCACCTGCGGCCTACAGCACATATTAGAGGGGCAAACTTGCGTCTGTTCAGTGATACCACCTGTTCCTGCCAAACACTAGAAACACATCAGAAAACTGGAAAGGAGGCACTCTGATGTTGAGAGGATATTAATGCTAATACATTAATAAAGCAAAGAAAAGGTCTCTGGCTCTCAGGGAATTTAAGTGCAGCAACGGCAGGAGGAAATGATGTAAGACTTTTATTAAAAGCCCATGCAAAGACAGATGTCCAGATTCTTGAATGTGCTTAGTTCTGTGGTCAAATGACACCTCagctagggctgcaactaacaatTAGTTTAATAATCGATTATTATGTCGAATATTTtttcaatgaatcaatgaatcggataaaaaaaaaaaagaaaagcattcattAATAACCCTTTATTAAATAACAGAACTAACAAACGTTGTCCTTGCACATCTATGAGCTgttgtaatgataataataaaaataataatgataataatcaaataaaaaactaacttagtaattttttcctgttttcaatccaaatatctaaaaaaatcttaaatcaagatgcatactagacacatgaaatagcataagaaattatgtcttgttttttgaaaaaaaaaaatctcaattttgtgattgtttgcttaaaacaagcaaaattatttgccgatggggtaagaaaaataatcttaatgagatataatctcaaacagaagtaATAAGCATCACTTAATTTTCTCATCCATTTGTTCTTGCCtagtcttgatttaagattttttaggtatttggacttgaaacaagatgaaagaaataagaaaaggttttatttatttatttatatttttattttattttatttttttttgcagggtAGCTTTATGACAACAGATTTAAAAATTAATGATCCAAAAAAGGCGAGTGTCTAAAAATTCTTTAGTCTTGCAAtgcaaagtgcaaagtaactATAGCAGCGCTGCTTTACTTCTTTTATTCACTCTGTCACTGGTGAGGCCCCGGAAGTATGTTTTGCTAGGCgatcattattttaaagcattcaCCTTTAATGTTTTTGTGTCAACATGTCATGTTTGTCAGCCACTGCAGCCACAAAATCGCTGTATGACAGATGTAACACAGATATgtgagtgtttgtttgttgtttaaaagATGTATAAATGATCTTGATTGTGTTATATAACTTGAGATGGGTATCAGCATGTTTATTTGTGGCCGCACACATGCCTCATTCACAAAAGCAAAACAGGATTCAGCACATAATTTCCTCAGTTACTCCCAAAATGCATGCAAGCATGTGGCTGGCCAGTTGGGAGAAGAATAGATTGAACTTTATTGTTACTTTACTACGTGTTTCTGAAATGAATAATACACATCGGCAAGATTTGAAAGGACTGTTAGACTTTCATAGACTTtcttgtgttttacaaactctaaatgtattgttttactagtatgtgtgtgcatttacatgtctaaaacataaaataagcagtgggtggttaaaaacactgcataattgtgataattgCCAACGCTCAGTTTGAATTTTTCACGTCATGCTTTTCAAGCTGGATAACAAGTAAACACCAGCACCAGGGACATTACGTTTCTCACTTCAAAATggaacaaaagtaggattctgtAGTGATTACCCTGCTTTTGCACCCTTCCTCCTCTTCAAAGACTCCAACATGTTTGCATTCCAGGTGCTGAATCATTGCCGTGGTGCTCCTGTGATCACTTTTGCATACTTGGctgttaacagattttttttgtttatttagtgtgAAATGCTCTTACACCTTGAATGACTAGGGTCACACAGATTTCTCTGCCTTCGCCATGTATCTTTCCTCTAATGTTACCtccactcgttttttttttttgctccgttcTGTCTATGAGGCGAGagaggcagtttttttttaaatgatcaaatgtCTCCACGTCACGTGACATGAAGAATTGATTATGAAATTTGTTGCCAATGCTATAAGTAATCAATTTTAATTGATATAATCAATTCGTTGTTGCAGTCCTAACCTCAACAAATACTATTAATATCATAAATTTGAATACTTAATAACAACTTTcatcctaaagggatagttcacccaaaaataaaaattctgttattaattacttaccatcatcaaagagcttagaatgaccaagaggcgacgctctggtgtaatttgggaaacagacactagagggcgcggcggccattttggaatgaaaactccaatagaacagcatgcatattataagtctgtaaaataaactattaaaagtgctgatgttcGTGATAATAcgtttcaggttgtatctcaactttaatgcgctttttgaataaataaataaaaaacaaagcagctgcttgccatcgcgacagtaatgagatccaatggacggccgatcactttcactccaaaatggcggaatccggggctgttgctgggcacagctgttgcaatggaacgttctattaagtgtcgcctcttggtcattctaagctctttgccatCATGTGGTTCCAAACCCAGAGACAGTTGTTATTCTTCAAAATACAACTGACATTTTTAGTTCACTTAAAAAACCTACTCTGTACCATCACGtcgttccaaacctttgagtttatttcttctgttgaacacagaataaaatatttagaaaaaagctgaaaatctgtaactattgacttccatcgtAGAAgaaacaaatactgtagaagtcaatagttacaagttTCCAGACTTCTTCAAGGCAGAAACTTTCATGGTTAccagaagaaagacactcaaaGGTTAGAGACaggtaaagtgtgagtaaatgaacaaAGAATTGATTAAACTTGAAATGAACTATAActtaaagatattttagattaaatccaaGAACTCCTTCATTCCCCATGGACAGCAATTATAACAGCTTAGTCACAACAGACtgtatgccttcagtggttcaatcttAATATTTTGAGAATActtgtgtgcacataaaacaagAATGACAGATTCACTGATAACAGTGCTGTGCTTTTTGTGTGCATCGCACTCGGTCACCTGCTGATGTTTAACAATGCTTTGTTTCATAGCTTGATAATACTCCGATTAAACCACCAAAGTCACATGGACTGTTTTGGTAGTTTTCTTTACATTGAACAAGCCGAGGGCATTGGTGTCTATTAAGGATAAGACTCtcatatttaatcaaaaatatcttaatttgtgatTTGAAGATGGACGGAGGTCTCAGGGGTCTAGTCTCGTGACAGTGAGTAATTAAt
>TCONS_00009293
ATGTGTGTGATTTGGAGAGGATCTTGTGGAAGGTGTCCAGTGGGAAAGAGACTGGGTGGACTCATCTGCAACTGATCCCCGTTTTTCTGAGCGCAATGGACTTGGAATGAAGACAAAACATGGATataatctgggaaatatttattattcttcaaGCCAATCTCATTGTTTGCACTTCAGCTCAGCCAAATCCACCCAAAATCCATGAGGGATGGTGGGCTTACAAAGAAGTTGTTCAGGGGAGCTTTGTTCCAGTGCCATCATTCTGGGGGCTTGTAAATTCAGCTTGGAATCTGTGTTCTGTGGGGAAGAGACAGTCTCCAGTCAACATCGAGACCAGCCATATGATATTTGATCCCTTCCTGACACCACTGAGGCTCAACACTGGCGGCCGAAAGgttggagggacaatgtacaacaccGGCCGCCATGTTTCACTCCGACTGGACAAAGAGCACCTGGTGAACATCTCCGGTGGACCAATGACCTACAGCCATCGCCTTGAGGAGATCAGGTTACACTTTGGGAGTGAGGACGGACAGGGCTCAGAGCATCTCCTCAATGGCCAGGCCTTCTCTGGGGAGGTGCAACTTATACATTACAACCATGAACTGTACACAAACTACACAGAAGCTGCTAAAAGTCCAAATGGCTTGGTGATAGTGTCTATATTTATGAAGATATCTGAGACTTCGAATTCATTTCTCAATCGGATGTTGAACAGAGACACTATCACAAGAATAACATACAAGAATGATGCATACCTTCTCTCGGGGCTAAACATTGAGGAGGTGTATCCAGAGACAGCAAGTTTTATCACTTACGAAGGGTCTATGACAATCCCACCATGCTACGAGACCGCAACGTGGATTCTGATGAACAAGCCAATCTACGTCACAAAAATGCAGATGCACTCCATGCGACTGCTAAGTCAGAATCAGCCCTCGCAGATATTCCTCAGCATGAGCGACAATGTTCGCCCAGTGCAGCCTCTGAACAACCGCTGCATTCGCACCAACATCAACTTCAGCATGCAGGGCAAGGACTGCCCCAACAACAGGGCACAGAAGCTGCAGTACCGAGtgaACGAATGGCTGCTGAAATAGAGCCAGGATGCAGACCAACCCAAGAACACTAACAACATTGAAAAGGATGAAGAGGAAAAGCTCATGGATAAACAGAATGAAGACTGACACATGTCCTGCCAGAAAAAGTCATGatgttgt
>TCONS_00009294
GTGTGATTTGGAGAGGATCTTGTGGAAGGTGTCCAGTGGGAAAGAGACTGGGTGGACTCATCTGCAACTGATCCCCGTTTTTCTGAGCGCAATGGACTTGGAATGAAGACAAAACATGGATataatctgggaaatatttattattcttcaaGCCAATCTCATTGTTTGCACTTCAGCTCAGCCAAATCCACCCAAAATCCATGAGGGATGGTGGGCTTACAAAGAAGTTGTTCAGGGGAGCTTTGTTCCAG
>TCONS_00009296
gttggagggacaatgtacaacaccGGCCGCCATGTTTCACTCCGACTGGACAAAGAGCACCTGGTGAACATCTCCGGTGGACCAATGACCTACAGCCATCGCCTTGAGGAGATCAGGTTACACTTTGGGAGTGAGGACGGACAGGGCTCAGAGCATCTCCTCAATGGCCAGGCCTTCTCTGGGGAGGTGCAACTTATACATTACAACCATGAACTGTACACAAACTACACAGAAGCTGCTAAAAGTCCAAATGGCTTGGTGATAGTGTCTATATTTATGAAGATATCTGAGACTTCGAATTCATTTCTCAATCGGATGTTGAACAGAGACACTATCACAAGAATAACATACAAGAATGATGCATACCTTCTCTCGGGGCTAAACATTGAGGAGGTGTATCCAGAGACAGCAAGTTTTATCACTTACGAAGGGTCTATGACAATCCCACCATGCTACGAGACCGCAACGTGGATTCTGATGAACAAGCCAATCTACGTCACAAAAATGCAGATGCACTCCATGCGACTGCTAAGTCAGAATCAGCCCTCGCAGATATTCCTCAGCATGAGCGACAATGTTCGCCCAGTGCAGCCTCTGAACAACCGCTGCATTCGCACCAACATCAACTTCAGCATGCAGGGCAAGGACTGCCCCAACAACAGGGCACAGAAGCTGCAGTACCGAGtgaACGAATGGCTGCTGAAATAGAGCCAGGATGCAGACCAACCCAAGAACACTAACAACATTGAAAAGGATGAAGAGGAAAAGCTCATGGATAAACAGAATGAAGACTGACACATGTCCTGCCAGAAAAAGTCATGatgttgtaaagaaaaaaaaa

Function

symbol description
ca10a Predicted to enable hydro-lyase activity. Acts upstream of or within swimming behavior. Is expressed in several structures, including cardiovascular system; eye; gill; integument; and pleuroperitoneal region. Orthologous to human CA10 (carbonic anhydrase 10).

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0036269 swimming behavior biological_process
GO:0005575 cellular_component cellular_component
GO:0016836 hydro-lyase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-123 Predicted to enable hydro-lyase activity. Acts upstream of or within swimming behavior. Is expressed in several structures, including cardiovascular system; eye; gill; integument; and pleuroperitoneal region. Orthologous to human CA10 (carbonic anhydrase 10).

Ensembl:

ensembl_id ENSDARG00000052644

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009292 False 6343 mRNA 0.39 10 21298317 21553637
TCONS_00009293 False 1226 mRNA 0.47 9 21299338 21549134
TCONS_00009294 False 251 mRNA 0.45 2 21299342 21322436
TCONS_00009296 True 841 mRNA 0.47 6 21525496 21549147

Neighbor

gene id symbol gene type direction distance location
XLOC_004689 NA coding upstream 191330 20806897 ~ 21106987 (+)
XLOC_004688 st6galnac1.2 coding upstream 513168 20691310 ~ 20785149 (+)
XLOC_004687 st6galnac1.1 coding upstream 612693 20678187 ~ 20685624 (+)
XLOC_004686 mxra7 coding upstream 620335 20667301 ~ 20677982 (+)
XLOC_004685 stx4 coding upstream 645394 20627164 ~ 20652923 (+)
XLOC_004692 mrpl27 coding downstream 130602 21684239 ~ 21688087 (+)
XLOC_004693 pkd1b coding downstream 143903 21697540 ~ 21748008 (+)
XLOC_004694 NA coding downstream 204180 21757817 ~ 21799396 (+)
XLOC_004695 NA coding downstream 464309 22017946 ~ 22019770 (+)
XLOC_004696 NA coding downstream 705325 22258962 ~ 22304841 (+)
XLOC_004679 NA non-coding upstream 793516 20491619 ~ 20504801 (+)
XLOC_004675 NA non-coding upstream 1032852 20263585 ~ 20265465 (+)
XLOC_004670 NA non-coding upstream 1839032 19458809 ~ 19459285 (+)
XLOC_004667 BX649366.2 non-coding upstream 1910044 19388143 ~ 19388273 (+)
XLOC_004700 CR925753.1 non-coding downstream 1024767 22578404 ~ 22578530 (+)
XLOC_004701 NA non-coding downstream 1064751 22618388 ~ 22619122 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_03213632_03233822 CAR10, CA10 coding CI01000063 null 3213632 ~ 3234293 (+)
bowfin (Amia calva) AMCG00013075 LOC106589445 coding CM030125.1 CM030125.1 19080736 ~ 19209004 (-)