stx6 (stx6)


Basic Information

Item Value
gene id stx6
gene name stx6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 784199 ~ 808239 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811713.1
GCATATGTTACGTCACTTCCGCCTCTGCATGTAAACAAAGCGGAGTCTGGCTGCGGAGTTTCTGATGGAGACCGACTGAGAGGAAGCAGAGAAACGCAGGATAAAGTTGGGTTAGTTCGGACAGCTGAAGGCCTGAGAGATGGAGCTCCGCTCCGACTGAACTGGAAACCACAACATGTCGATGGAGGACCCGTTCTTCGTCGTTAAAGGCGAGGTGCAGAAGGCAGTGAACGCGGCGCAGAGCCTCCACCAGCGATGGAGCGAGCTGCTGCAGGAAGGGGGCGGAGCCTCCAAGGAGGAAATGGACTGGACGACCAATGAGCTGAGGAACAGTTTACGGTCCATCGAGTGGGACCTGGAGGACCTCGACGAGACCATCAGCATCGTTGAGTCCAACCCGAAGAAGTTCAACCTGGACGCAGCCGAGCTGTCAAAGAGGAAAGCTTTCATCACGAGCACCAGACACACTGTCAAGgaaatgaaagagcagATGTCGAGTCCAACTGCTGCTTCAGGGgacagaaacaacaaacagGCTCTGCTGGGCGAGCGCGGTGCTCAGGGTCCAAGCTGGCAGGCCGGTCCTGATAAATACAGCCGACTGGACCGCACACTGCAGACCGCCAACTCTCAGTTTATAGAGGAGCAGCAGGTCCAGCAGCAGCTGATGGCGGAGCAGCAAGATGAACAGCTGGAACTGGTGTCGGGAACGATCGGAGTCCTGAAGAACATGTCCGAGAGGATCGGCATGGAGCTGGATGAACAGGCAGTGATGTTGGATGACTTCACTCATGAGGTGGACAACACTCAGTCTAAGATGGACACCGTCATGAAGAAACTGGCCAAAGTGTCTCACATGACCAGCGACCGTCGCCAGTGGTGTGCTATCGGCGTGTTGCTCGCAATCCTCTTCGTTgtcatcctcctcttcttcatcctctgaTTGATGCCTCCAGTCAGCAGAGAACTTGTCTTAACCCTTAAACCTGTGTCTCCTGGAATATACCAGACTATATCAGACTCTACTGGACTCTAATGGACTCTACTGAACTGTAATGGACTCTAATGGACTCTACTGAACTGTAATGGACTCTACTGAACTGTAATGGACTCCACGGGACTGTAATGGACTCTACGGGACTCTACTGGACCACACTATCTGCTTTCCCAATGTTGCACCATTGTGAGCAAAGTCTTGGAGACTCAAGCTGCCAGAACAAAAACATTAGTATTATCGCGCTGATCACTCCGCAGTTTTACCCTGAAACCCGGCCGTAACACGCTGCCTCTGTGTAAACACTCGGCCGCAGATAATAGGAACAATTTGTGCCATCCATCCAACACAAGCAGGCTAATGTTAAGATGTGTTCAGATGAATCACTTTCTCTGTTTAGCTAGCAGGAACCCCAGGAACAGCACTCAGCCTGGCAGTGTCCTCTTGCGGTATTGCAGCTAAAAATCCAGGAAGGATTTTCCCTGTAGACCACCGTAGTAAAAGAGGCGTTTGTAAAACTGGCTTCGTGCTGTGGTTGGAAGCAACTACTATTTGGACAAGACTTTGCACGACTCTACCGGACTCTACCACACCCTACCTGACTCTACTGGACTCTACAGACTGaatggcacttttttttttttggttctttAAATGTTAGTTAAAATCATGGCAGAGGTCAAACAGGTGAAAACATgttcttttgatgttttatgtttgttttatttaaagggCTGAAAATAACCATTTACACTCCACTTTATCTCCAGTTTAGCTGTAATACCTTCAGTGTAACTTTAAACTCTTAACTCCACTTGAATCTGGAATTAAAATCTAGTTTCATTCCAAGTTTAGTGCAGTTCTGACTTCGTATTTTCCCCATTTAAACTCAGTTTAACTCTAAGTTTAAGTCCACTTTTACCTAAACTGTTGCTCCAGTTTAACTGTGGTTTAATCCCAGTTTAACACCAGTATGACTCTGGTTGTTTAGTCTGAGTTTGCAGCTTATGATATCTATATATgatataataatgtaataacactaaacttcctgtttgtgtttacagattttgtgttttttgtttcacTGACTGAATCTTTGTTTTATGCTGTTTATCCTTGAACGTTTTATTTTACTAAGtattttttgtttcctttaaTTCTGAAGTGTATTAATTGTGAACTTTGTTAAACGACCCACTTCCTGCTGcagcttcacaataaaagcttttcCTCTggaaggcttttattgtgaagtgcAGCAGGAAGTGCAGTCCTGAAGGTTAGCGAGCGAAGTAACTGTCTGTTTAATATGAATTTATTAAAGTCATGTGACGGACAAAGCAGCCAATCACATCGTCCCAAACCATCTGATTTTCGGTACTCGTGGCGGTGAAATCTCACGTCTGTTTCCTGTTCCTGttcacaaaataaaagcagtgtTCAGAAGTCAAAGTCATTAAATACAGAATTTATAAACATTTAACTCCTTCATAAATCCATCCAGTAATTTTACAACATAAGTCAGTATTTTATGCATCTTTAActtttaatataatattttgtTCTTCAGCAGATTTTCACTAATTAATCAAAGTTTTTCAAGTTAAACTGAAATTATAGAAATGTTCGGTGTTTTAAATTTAGAAATACATCCGTCAATGTTTCCTTTCAGAAATTCTGGCAACTAAACCAACATGGAGCCCtgaaatagtaataataataataataataataataaaaatactaataatactaaGACTAATAATGATGATAAAGTTAATAATAAACACTTTAAATGTTGCTGATGCATCATGAATCAGAGCAGCAGAACAGATGACTGAAATACTGCTGAAGGCGTTAAGTGTGAAGTTAAGGCGCTGACCCATCGACCTGATAATCAGCcgtcagacagtctggcgaggtcggtgactcaagtctgttcagtgtgtcccgtgccgtcgtcagtcggaggagctgtCAGCTTtaattttggccgatttgacttgttgaattggccagtgggcagtcggactcaatgagcaatgtgattggtggagtgctaacccttAACTAGCGAATCCGAGAGCTGCcaacgccagtatcttcttattactagccGTAGTATTTCCTTGTGTTCAGCAAGTGATGacaacgatccttcttgactaccATCAccactctctgatgaaaacaaggACTGACCACAGCGTGCTCTGTGATTATCACGTCTAGAGAGATTTTCCCTCATttacggttttcattttttgagtGACAAATCAGATTAGCgacacctgctgttatggagacgtattacgtctctcGCAGgagcagaacgtacgctcaagtcagcgtcgcttcggtgtgttctgagacagtttttggacctcggggagactgatcagtccgactggctttccTGCTGAcagtcggccgtcgggttggtgtgttgGAGCCTTTAAACTgttattagggttagggtaaccCTAATATTAGGGTTACCCTAACCCTTGATCTGTGTATGAAACATCGTCCGTctgtctttattattttatttctgtggaCTTCTGAGTGATGTGAAGTTGAAATGTGTTTCAATAAACGgattcagaaaataaaaactgacTGATCTTTA

Function

symbol description
stx6 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in several processes, including retrograde transport, endosome to Golgi; vesicle docking; and vesicle fusion. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in Golgi membrane. Predicted to be part of SNARE complex. Predicted to be active in endomembrane system. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human STX6 (syntaxin 6).

NR:

description
PREDICTED: syntaxin-6

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08498 STX6; syntaxin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811713.1 True 3629 mRNA 0.44 8 784199 808239

Neighbor

gene id symbol gene type direction distance location
LOC120565788 LOC100695038,LOC103366337,LOC107380922,LOC107082714,LOC105918713,LOC105028844,LOC106604646,LOC106611650 coding upstream 624742 141925 ~ 159457 (+)
wdr18 wdr18 coding downstream 24002 832241 ~ 854498 (+)
grin3bb grin3b coding downstream 78120 886359 ~ 955236 (+)
med16 med16 coding downstream 175412 983651 ~ 1009213 (+)
plppr3b NA coding downstream 202508 1010747 ~ 1025143 (+)
LOC120566171 LOC108248660 coding downstream 514166 1322405 ~ 1380914 (+)
G92018 LOC103369104,LOC104936604,LOC101078280 non-coding upstream 10242 722115 ~ 773957 (+)
G92022 LOC104936604,LOC103369104 non-coding upstream 15525 765454 ~ 768674 (+)
G92015 NA non-coding upstream 89449 694433 ~ 694750 (+)
G92013 NA non-coding upstream 99147 684735 ~ 685052 (+)
G91896 NA non-coding upstream 179368 520487 ~ 604831 (+)
G92027 NA non-coding downstream 8343 816582 ~ 818325 (+)
G92029 NA non-coding downstream 16335 824574 ~ 826046 (+)
G92062 NA non-coding downstream 52234 860473 ~ 860703 (+)
G92066 NA non-coding downstream 91982 900221 ~ 984045 (+)
G92093 NA non-coding downstream 156529 964768 ~ 965650 (+)
G92019 NA other upstream 25223 722373 ~ 758976 (+)
G91903 bmpr1a other upstream 190322 580807 ~ 593877 (+)
G91887 NA other upstream 217733 455709 ~ 566466 (+)
G91897 NA other upstream 241290 541691 ~ 542909 (+)
G91827 NA other upstream 360547 83806 ~ 423652 (+)
G92146 NA other downstream 360582 1168821 ~ 1170046 (+)
G92157 NA other downstream 394648 1202887 ~ 1204046 (+)
trmt13 NA other downstream 412571 1220810 ~ 1228679 (+)
G92169 dbt,LOC102778223 other downstream 433148 1241387 ~ 1256194 (+)
LOC120565410 camk4,LOC102194929,LOC102785978 other downstream 655480 1463719 ~ 1535856 (+)

Expression


Co-expression Network