agbl4 (agbl4)


Basic Information

Item Value
gene id agbl4
gene name agbl4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22816551 ~ 23246315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811718.1
TTTGCTGCTGGCGTGCCTCAACTTGTTTCCCGCCATCTGTTCCCTAACTTTTACCCCTCTGAACACCGTTTGGATTTATTTGCCTGTTCTGACTGATGTCCCACTGATGAACTGTAAGCCTATCttaatcTCTTGTCTAAGTGGTGATGATTCAATCTAAGACCAAATGTGAGTCCTCTTTCAAGTCAACATTGGGCAGtgacactggaggagaggatGCCTTGGTGGGAAATGTGAACAAACTGATGGTGAGCCCACCAGGTTATTCAGGAGCTTCGCGAAAAGGACATCTGGTTTTTGATGCGTGCTTTGAGAGTGGGAACCTTGGCCGtgttgactacatcagtgagttTGAGTTTGACCTCTTCATCCGGCCTGACACCTGCAACCCCCGCTTCAGAGTCTGGTTTAACTTCACAGTGGAGAATGTCCGGGAGACACAGAGAGTCATTTTCAATGTGGTCAACTTCTCCAAGACCAAGAGCCTGTACAGAGATGGCATGTCTCCCGTAGTCAAGTCTACCAGCAGGCCAAAATGGCAGAGGCTTCCTGCCAAAAACGTGTACTACTACCGTTGTCCTGACCACCGGCGCAACTATGTCATGTCCTTTGCCTTCTGTTTCGACCAAGAGGACGATGTATACCAGTTTGCCTACTGCTATCCCTACACCTACTCCAGACTGCAGCACTACCTGGCAAGCCTGGAGCGCAGGAACCTGCCCTACCTGCAGAGGGAGCAACTGGGTCTCAGTGTGCAACAACGGCGTCTAGACCTGTTAACCATCACCAACTCTGACCATCTGAAtccagagagggagaaaaagctGGTCTTTCTTTCAGCTCGTGTTCACCCTGGAGAGTCTCCTGCCTCCTTTATTTGTCAAGgTGTGATCGACTTCCTGGTGAGCCAGCATCCTGTGGCTCAGATCCTAAGAGATCATGTGATCTTCAAGATCGTCCCCATGCTAAATCCTGATGGAGTCTACCTGGGCAACTACAGGTGTTCTCCGATGGGTTTCGACCTGAATCGCCACTGGCAGGATCCCTCTCCATGGGCCCACCCCACGTTGCACGCTGTCAAACAACTCATAGTTCAGATGAACCAAGACCCGAGAGTTAGTTTGGAGTTCTACATTGATGTCCATGCCCACTCCACCATGCTGAATGGCTTCATGTACGGCAATGTGTTCGAGGACGAGGAGCGCGTCCAGAGACAAGCTGTCTTCCCTAGACTGTTGTGCCAAAATGCACCAGACTTCTCCTTTTCTAACACGTCCTTTAACCGGGACGTGGTGAAGGCCGGTACCGGTAGACGGTTCCTCGGTGGTCTGCTTGATGACACATCCTACTGCTACACTCTAGAGGTGTCCTTCTACAGCTACATGACGGCTGGCAGCACCGCTCCTGTGCCATACACTGAGGAGACATACACGAAGCTGGGCAGGAATGTGGCTCGGACTTTCCTGGATTATTACAAACTCAACAACCTCATCAAGGACAACAGACCTATTCACATTCAAAGTTCTGAGGTGATGTCCCAGACAAGCAACGTTAACAGAAAGGGCAATGGTTTTGGCAGAGACGCAGCAGacaaagagaaggagaagagcATGGGTATCAGGCATTAGACAAACAGACatacggacagacagacacagactgagCATGTATAAAACACAAAGCACCGTCGCAAGAGGATCCTTCACACTTCATTGCCTTTAAAAGCTCTACATCTCCCTGGCTATAAAGACTTATTTTCACAGATTTGTAACAGTGGGATGACTGGTACTTGCAGGACTAAAATCAGAACAAGCTTCCTCTTGGGTTATTTAGTGACTTTAAAATGTGGACTATTGAATGCTAAGGGAAGACAGACGGGTTCTACCCATCTAGTCCACCTGAGGCCTTTAATCAGCAGCTCCTATTTGTTGTTTATACAATTGTAAATAAATGCATGCTTCCTTGCTGTTACTGACATATTATCTCTGTTGGTATTAGAATTAGTCATTAAACACTTAATCACATTACAATGCTGTACCTGTTGCTCTCTTATATGAATACTGATTAATTATTGTTTGATTTATAAAAATGAGACCTACAGTATATAAAGAACATTCTGATTTA
>XM_039811719.1
TTGCTGCTGGCGTGCCTCAACTTGTTTCCCGCCATCTGTTCCCTAACTTTTACCCCTCTGAACACCGTTTGGATTTATTTGCCTGTTCTGACTGATGTCCCACTGATGAACTttaatcTCTTGTCTAAGTGGTGATGATTCAATCTAAGACCAAATGTGAGTCCTCTTTCAAGTCAACATTGGGCAGtgacactggaggagaggatGCCTTGGTGGGAAATGTGAACAAACTGATGGTGAGCCCACCAGGTTATTCAGGAGCTTCGCGAAAAGGACATCTGGTTTTTGATGCGTGCTTTGAGAGTGGGAACCTTGGCCGtgttgactacatcagtgagttTGAGTTTGACCTCTTCATCCGGCCTGACACCTGCAACCCCCGCTTCAGAGTCTGGTTTAACTTCACAGTGGAGAATGTCCGGGAGACACAGAGAGTCATTTTCAATGTGGTCAACTTCTCCAAGACCAAGAGCCTGTACAGAGATGGCATGTCTCCCGTAGTCAAGTCTACCAGCAGGCCAAAATGGCAGAGGCTTCCTGCCAAAAACGTGTACTACTACCGTTGTCCTGACCACCGGCGCAACTATGTCATGTCCTTTGCCTTCTGTTTCGACCAAGAGGACGATGTATACCAGTTTGCCTACTGCTATCCCTACACCTACTCCAGACTGCAGCACTACCTGGCAAGCCTGGAGCGCAGGAACCTGCCCTACCTGCAGAGGGAGCAACTGGGTCTCAGTGTGCAACAACGGCGTCTAGACCTGTTAACCATCACCAACTCTGACCATCTGAAtccagagagggagaaaaagctGGTCTTTCTTTCAGCTCGTGTTCACCCTGGAGAGTCTCCTGCCTCCTTTATTTGTCAAGgTGTGATCGACTTCCTGGTGAGCCAGCATCCTGTGGCTCAGATCCTAAGAGATCATGTGATCTTCAAGATCGTCCCCATGCTAAATCCTGATGGAGTCTACCTGGGCAACTACAGGTGTTCTCCGATGGGTTTCGACCTGAATCGCCACTGGCAGGATCCCTCTCCATGGGCCCACCCCACGTTGCACGCTGTCAAACAACTCATAGTTCAGATGAACCAAGACCCGAGAGTTAGTTTGGAGTTCTACATTGATGTCCATGCCCACTCCACCATGCTGAATGGCTTCATGTACGGCAATGTGTTCGAGGACGAGGAGCGCGTCCAGAGACAAGCTGTCTTCCCTAGACTGTTGTGCCAAAATGCACCAGACTTCTCCTTTTCTAACACGTCCTTTAACCGGGACGTGGTGAAGGCCGGTACCGGTAGACGGTTCCTCGGTGGTCTGCTTGATGACACATCCTACTGCTACACTCTAGAGGTGTCCTTCTACAGCTACATGACGGCTGGCAGCACCGCTCCTGTGCCATACACTGAGGAGACATACACGAAGCTGGGCAGGAATGTGGCTCGGACTTTCCTGGATTATTACAAACTCAACAACCTCATCAAGGACAACAGACCTATTCACATTCAAAGTTCTGAGGTGATGTCCCAGACAAGCAACGTTAACAGAAAGGGCAATGGTTTTGGCAGAGACGCAGCAGacaaagagaaggagaagagcATGGGTATCAGGCATTAGACAAACAGACatacggacagacagacacagactgagCATGTATAAAACACAAAGCACCGTCGCAAGAGGATCCTTCACACTTCATTGCCTTTAAAAGCTCTACATCTCCCTGGCTATAAAGACTTATTTTCACAGATTTGTAACAGTGGGATGACTGGTACTTGCAGGACTAAAATCAGAACAAGCTTCCTCTTGGGTTATTTAGTGACTTTAAAATGTGGACTATTGAATGCTAAGGGAAGACAGACGGGTTCTACCCATCTAGTCCACCTGAGGCCTTTAATCAGCAGCTCCTATTTGTTGTTTATACAATTGTAAATAAATGCATGCTTCCTTGCTGTTACTGACATATTATCTCTGTTGGTATTAGAATTAGTCATTAAACACTTAATCACATTACAATGCTGTACCTGTTGCTCTCTTATATGAATACTGATTAATTATTGTTTGATTTATAAAAATGAGACCTACAGTATATAAAGAACATTCTGATTTA
>XM_039811720.1
CGTTGCCGTGGTAACACACTTGGAGCGTCGGTtgctctgtaacaggatggaaAGGAAGATGGAGGAGAGTACTGTTAGAGACGTCGAGACTGGCAGtgacactggaggagaggatGCCTTGGTGGGAAATGTGAACAAACTGATGGTGAGCCCACCAGGTTATTCAGGAGCTTCGCGAAAAGGACATCTGGTTTTTGATGCGTGCTTTGAGAGTGGGAACCTTGGCCGtgttgactacatcagtgagttTGAGTTTGACCTCTTCATCCGGCCTGACACCTGCAACCCCCGCTTCAGAGTCTGGTTTAACTTCACAGTGGAGAATGTCCGGGAGACACAGAGAGTCATTTTCAATGTGGTCAACTTCTCCAAGACCAAGAGCCTGTACAGAGATGGCATGTCTCCCGTAGTCAAGTCTACCAGCAGGCCAAAATGGCAGAGGCTTCCTGCCAAAAACGTGTACTACTACCGTTGTCCTGACCACCGGCGCAACTATGTCATGTCCTTTGCCTTCTGTTTCGACCAAGAGGACGATGTATACCAGTTTGCCTACTGCTATCCCTACACCTACTCCAGACTGCAGCACTACCTGGCAAGCCTGGAGCGCAGGAACCTGCCCTACCTGCAGAGGGAGCAACTGGGTCTCAGTGTGCAACAACGGCGTCTAGACCTGTTAACCATCACCAACTCTGACCATCTGAAtccagagagggagaaaaagctGGTCTTTCTTTCAGCTCGTGTTCACCCTGGAGAGTCTCCTGCCTCCTTTATTTGTCAAGgTGTGATCGACTTCCTGGTGAGCCAGCATCCTGTGGCTCAGATCCTAAGAGATCATGTGATCTTCAAGATCGTCCCCATGCTAAATCCTGATGGAGTCTACCTGGGCAACTACAGGTGTTCTCCGATGGGTTTCGACCTGAATCGCCACTGGCAGGATCCCTCTCCATGGGCCCACCCCACGTTGCACGCTGTCAAACAACTCATAGTTCAGATGAACCAAGACCCGAGAGTTAGTTTGGAGTTCTACATTGATGTCCATGCCCACTCCACCATGCTGAATGGCTTCATGTACGGCAATGTGTTCGAGGACGAGGAGCGCGTCCAGAGACAAGCTGTCTTCCCTAGACTGTTGTGCCAAAATGCACCAGACTTCTCCTTTTCTAACACGTCCTTTAACCGGGACGTGGTGAAGGCCGGTACCGGTAGACGGTTCCTCGGTGGTCTGCTTGATGACACATCCTACTGCTACACTCTAGAGGTGTCCTTCTACAGCTACATGACGGCTGGCAGCACCGCTCCTGTGCCATACACTGAGGAGACATACACGAAGCTGGGCAGGAATGTGGCTCGGACTTTCCTGGATTATTACAAACTCAACAACCTCATCAAGGACAACAGACCTATTCACATTCAAAGTTCTGAGGTGATGTCCCAGACAAGCAACGTTAACAGAAAGGGCAATGGTTTTGGCAGAGACGCAGCAGacaaagagaaggagaagagcATGGGTATCAGGCATTAGACAAACAGACatacggacagacagacacagactgagCATGTATAAAACACAAAGCACCGTCGCAAGAGGATCCTTCACACTTCATTGCCTTTAAAAGCTCTACATCTCCCTGGCTATAAAGACTTATTTTCACAGATTTGTAACAGTGGGATGACTGGTACTTGCAGGACTAAAATCAGAACAAGCTTCCTCTTGGGTTATTTAGTGACTTTAAAATGTGGACTATTGAATGCTAAGGGAAGACAGACGGGTTCTACCCATCTAGTCCACCTGAGGCCTTTAATCAGCAGCTCCTATTTGTTGTTTATACAATTGTAAATAAATGCATGCTTCCTTGCTGTTACTGACATATTATCTCTGTTGGTATTAGAATTAGTCATTAAACACTTAATCACATTACAATGCTGTACCTGTTGCTCTCTTATATGAATACTGATTAATTATTGTTTGATTTATAAAAATGAGACCTACAGTATATAAAGAACATTCTGATTTA
>XM_039811721.1
TTTGCTGCTGGCGTGCCTCAACTTGTTTCCCGCCATCTGTTCCCTAACTTTTACCCCTCTGAACACCGTTTGGATTTATTTGCCTGTTCTGACTGATGTCCCACTGATGAACTGTAAGCCTATCttaatcTCTTGTCTAAGTGGTGATGATTCAATCTAAGACCAAATGTGAGTCCTCTTTCAAGTCAACATTGGTGTTAACAGGCCCCGACTACCCGAGAGCTCCTGGTGGAGCCAGCGGCTAGCGACTGCAACTCAAACGGTCACTCCTCCTCGGCACTAATGCAAGGGCAGtgacactggaggagaggatGCCTTGGTGGGAAATGTGAACAAACTGATGGTGAGCCCACCAGGTTATTCAGGAGCTTCGCGAAAAGGACATCTGGTTTTTGATGCGTGCTTTGAGAGTGGGAACCTTGGCCGtgttgactacatcagtgagttTGAGTTTGACCTCTTCATCCGGCCTGACACCTGCAACCCCCGCTTCAGAGTCTGGTTTAACTTCACAGTGGAGAATGTCCGGGAGACACAGAGAGTCATTTTCAATGTGGTCAACTTCTCCAAGACCAAGAGCCTGTACAGAGATGGCATGTCTCCCGTAGTCAAGTCTACCAGCAGGCCAAAATGGCAGAGGCTTCCTGCCAAAAACGTGTACTACTACCGTTGTCCTGACCACCGGCGCAACTATGTCATGTCCTTTGCCTTCTGTTTCGACCAAGAGGACGATGTATACCAGTTTGCCTACTGCTATCCCTACACCTACTCCAGACTGCAGCACTACCTGGCAAGCCTGGAGCGCAGGAACCTGCCCTACCTGCAGAGGGAGCAACTGGGTCTCAGTGTGCAACAACGGCGTCTAGACCTGTTAACCATCACCAACTCTGACCATCTGAAtccagagagggagaaaaagctGGTCTTTCTTTCAGCTCGTGTTCACCCTGGAGAGTCTCCTGCCTCCTTTATTTGTCAAGgTGTGATCGACTTCCTGGTGAGCCAGCATCCTGTGGCTCAGATCCTAAGAGATCATGTGATCTTCAAGATCGTCCCCATGCTAAATCCTGATGGAGTCTACCTGGGCAACTACAGGTGTTCTCCGATGGGTTTCGACCTGAATCGCCACTGGCAGGATCCCTCTCCATGGGCCCACCCCACGTTGCACGCTGTCAAACAACTCATAGTTCAGATGAACCAAGACCCGAGAGTTAGTTTGGAGTTCTACATTGATGTCCATGCCCACTCCACCATGCTGAATGGCTTCATGTACGGCAATGTGTTCGAGGACGAGGAGCGCGTCCAGAGACAAGCTGTCTTCCCTAGACTGTTGTGCCAAAATGCACCAGACTTCTCCTTTTCTAACACGTCCTTTAACCGGGACGTGGTGAAGGCCGGTACCGGTAGACGGTTCCTCGGTGGTCTGCTTGATGACACATCCTACTGCTACACTCTAGAGGTGTCCTTCTACAGCTACATGACGGCTGGCAGCACCGCTCCTGTGCCATACACTGAGGAGACATACACGAAGCTGGGCAGGAATGTGGCTCGGACTTTCCTGGATTATTACAAACTCAACAACCTCATCAAGGACAACAGACCTATTCACATTCAAAGTTCTGAGGTGATGTCCCAGACAAGCAACGTTAACAGAAAGGGCAATGGTTTTGGCAGAGACGCAGCAGacaaagagaaggagaagagcATGGGTATCAGGCATTAGACAAACAGACatacggacagacagacacagactgagCATGTATAAAACACAAAGCACCGTCGCAAGAGGATCCTTCACACTTCATTGCCTTTAAAAGCTCTACATCTCCCTGGCTATAAAGACTTATTTTCACAGATTTGTAACAGTGGGATGACTGGTACTTGCAGGACTAAAATCAGAACAAGCTTCCTCTTGGGTTATTTAGTGACTTTAAAATGTGGACTATTGAATGCTAAGGGAAGACAGACGGGTTCTACCCATCTAGTCCACCTGAGGCCTTTAATCAGCAGCTCCTATTTGTTGTTTATACAATTGTAAATAAATGCATGCTTCCTTGCTGTTACTGACATATTATCTCTGTTGGTATTAGAATTAGTCATTAAACACTTAATCACATTACAATGCTGTACCTGTTGCTCTCTTATATGAATACTGATTAATTATTGTTTGATTTATAAAAATGAGACCTACAGTATATAAAGAACATTCTGATTTA

Function

symbol description
agbl4 Is expressed in Kupffer's vesicle; eye; otic vesicle; peripheral olfactory organ; and pronephros. Orthologous to human AGBL4 (AGBL carboxypeptidase 4).

NR:

description
cytosolic carboxypeptidase 6 isoform X1

GO: NA

KEGG:

id description
K23439 AGBL4, CCP6; cytosolic carboxypeptidase protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811718.1 False 2124 mRNA 0.47 14 22816551 23246315
XM_039811719.1 False 2112 mRNA 0.47 14 22816552 23246315
XM_039811720.1 False 2021 mRNA 0.48 13 22952715 23246315
XM_039811721.1 True 2219 mRNA 0.48 15 22816551 23246315

Neighbor

gene id symbol gene type direction distance location
dmrta2 dmrta2 coding upstream 38360 22775008 ~ 22778191 (+)
faf1 faf1,LOC102783815 coding upstream 52463 22698080 ~ 22764088 (+)
ttc39a ttc39a coding upstream 159525 22625085 ~ 22657026 (+)
eps15 LOC103370402 coding upstream 193016 22591643 ~ 22623535 (+)
calr LOC102308154,LOC102192544,LOC101484884,LOC100701980,LOC107393148,LOC108230540 coding upstream 227232 22584206 ~ 22589319 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding downstream 85463 23331778 ~ 23335697 (+)
si:ch1073-396h14.1 LOC103365213 coding downstream 173629 23419944 ~ 23454783 (+)
fam32a fam32a,LOC103365210 coding downstream 339486 23585801 ~ 23588140 (+)
hdgfl2 LOC103368921 coding downstream 345137 23591452 ~ 23599922 (+)
ap3d1 ap3d1 coding downstream 354001 23600316 ~ 23627747 (+)
LOC120565733 NA non-coding upstream 16406 22780607 ~ 22800145 (+)
G97410 NA non-coding upstream 221274 22594496 ~ 22595277 (+)
G97338 NA non-coding upstream 493696 22322492 ~ 22322855 (+)
G97335 NA non-coding upstream 500193 22313648 ~ 22316358 (+)
G97297 NA non-coding upstream 642158 22158057 ~ 22174393 (+)
G97537 NA non-coding downstream 77657 23323972 ~ 23324176 (+)
G97538 NA non-coding downstream 77944 23324259 ~ 23324499 (+)
G97554 NA non-coding downstream 106525 23352840 ~ 23363480 (+)
G97559 NA non-coding downstream 113743 23360058 ~ 23362720 (+)
G97572 NA non-coding downstream 154714 23401029 ~ 23425798 (+)
rnf11b rnf11 other upstream 140373 22657480 ~ 22676178 (+)
LOC120566217 NA other upstream 240349 22576129 ~ 22576202 (+)
LOC120566220 NA other upstream 241403 22575067 ~ 22575148 (+)
LOC120566221 NA other upstream 241627 22574843 ~ 22574924 (+)
LOC120566225 NA other upstream 241879 22574591 ~ 22574672 (+)
spata6 spata6 other downstream 2814 23249129 ~ 23282671 (+)
LOC120565086 NA other downstream 54491 23300806 ~ 23303691 (+)
pole4 NA other downstream 75149 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 132416 23378731 ~ 23380375 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 228467 23474782 ~ 23477818 (+)

Expression


Co-expression Network