faf1 (faf1,LOC102783815)


Basic Information

Item Value
gene id faf1
gene name faf1,LOC102783815
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22698080 ~ 22764088 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811742.1
CCACTTTACGTCAGCCGTTTAGCCGTAAAGCAATGGACTAGATGACAATAATGATATGAGATAACCGAACATTATAACGTTACTTTACAGAATTGTGTCTTTCTGAAGCGGCTAAATCCCGATAAAGTTTAACATTTCTAATTTGCCAACCTCTCATTCGTCGCCACGTCTAAGCAAAGTGTTTTGTTAATACTCAGTGTCCCTCAGTGAGGCGAGAAAGCGACGAGAGCCAGTGGAAGAAGAATTGCTTTTAGCCAGTCATTGCCATGGCCTCCGAAAGCGGCGAGAGCAACATGGATAGAGAAATGATTCTGGCCGACTTTCAGGCTTGCACTGGAATTGACAACATTGCAGAGGCAATCACTTTGTTAGAGCTTAATAACTGGGATTTAGTGGCAGCCATCAATGGAGTGATACCACAGGAGAATGGGATCTTACAAAGTAACTTTTCCAGTGAGGCGAGCCAGTCCAGCATGTTCGGACCtcctagccaatcagaagcagccgatgcagcagcaggaggtgcagtttctcccccctcctcttcgtctttgtcctcctctcctccgtCGTCCTCAACTTCAGCTTTTTGTCCTGTCAACGCTTCCTCCCGACACATTGTAGAGCGTCAGCCCCGGATGCTCAACTTCAGGGTGGAGTACCGGCAGCGCACTGTAGAGCTGGTACTGGAGGAAGGCAGCACAGTCGGAGAAATCAAACAAATCCTCGAGACAGAGCTTGGGGTTCCAGTGTCCAAAATGCAGCTGAAGGGATGGAAGTGTGGAGATGTATCAGATAGTACGGTGATGAGAAGTTTACACCTGCCCAAGAACAACAGCCTGTATGTCCTGACTCCCGACATCGCCCCTACTGCCAGCACCAGCAAAAACAGTGATCTCCAAGAGTCGTTAAACCAGAACTTCCTGCTGGTCATCAGCCACCGCGAGGCCCAGAGGGACTACAGTCTCAACTTCCCCGGCTCCCGAACCATACAGGAGGTGAAGAGGAATGTTTCAGATTTAACTAACATCCCAGTGCGGCATCAACAGTGGGAAGGATGGCCCGTGTCAGCGTCTGATGACTCTATGACGCTAGCTGTCTCTGGGATCACCTATCCTTGCCATCACCTCAGTGTTTGTCGAAGGTCCTCACCAGCCAATTCCCAGGAACCAACAGAAGagtgtgcagaTGTCCATATGGTCAGCGACAGTGAGGGGGATGATTTTGAGGATGCGTCAGAGTTTGGTGTGGACGATTCAGAGATGTTTGGAATGGGCTCCTCTACCTGTCGGAAATCACCTATGATGCCAGAGAATAGTGAGAATGAAGCTGATGCCTTACTGCACTTTACTGCTGAATTTTCTTCAAGGTATGGAGATACCCACCCAATGTTCTTCATTGGCTCTTTGGAGGCAGCGTCTCAAGAGGCCTTTCATGGCAAAGCCAGAGATAGAAAGCTGCTGGCAATCTACCTCTACAATGATGACAGTGTTCTCGGCAATGTCTTCTGTTCTCAAATGATGTGCGCTGACTCCATTGTCGCCTACCTGAGCCAGAACTTTATCACATGGGCCTGGGATGTCACTAAAGAAGCTAACAAAGCCAGACTACTCACCATGTGTACAAGGCACTTTGGCAGTGTGGTGACACAGACTATACGGACATACAAGACAGACCAGTTCCCCCTGCTCCTTATAGTCATGGGAAAACGAACATCCAATGAAGTTCTAAATGTTATTCAAGGCAATACGACAGTGGACGAGCTGATGATGAGGTTAATGGGAGCAATGGAGATCTTCACAGCACAACAACAAGAGGACATCAAAGATGAGGATGAGCGTGAGGCAAGAGAGACGGTGAAAAGAGAACAGGACGAGGCCTACCGTGTGTCTTTAGAGGCTGACCGCAAAAAGagagaagcccaagagagagaagaggccGAGCAGGTTCGCCTGGAACGAATGAgaaaggagcaggaggaggagaaggagGCAATCCGCTTGTCATTGGAGCAGGCCCTACCGCCAGAGCCCGAGGATTCAGGAGAGCAAATCAGCAAACTGCGAATCCGCACACCAAGCGGCGAGTTTCTGGAAAGGCGTTTCCAGGTCAGCTGTAAGCTTCAGGTCCTCTTCGACTTTGTGGCCTCCAAAGGATACCCCTTTGAAGAGTTCAAGCTCCTCACCACCTTCCCTCGTAGAAATATCACCCAGTTGGATCCAGGGTCGAATCTGATGGAGGCCAAGTTGTTTCCGCAGGAGACGCTCTTCCTGGAGTCTAAAGAATAGGAACTGGCCCTCTGACAGCTAGGAGGACCGACTGACTGATGAACTGGCTGGACACACACTAGTcactgagcacacacacacacacacacacacacacacacacacacagacaaaaccaATCCTCTCAGACGTAAATAAACACACTGGCATGCACGTCCAGTGACACACAAGTGCAAGTAAGCTTCCCTGCCCTCGGCCTGGTCATGGCACATGAATGCCTAGTGTACACGTGATGCACAGAGGAGCAAAGACAGTACACAAGCACACAGCCAAACATTCACCTCCccccaaactctctctctctctctctctctctctctctctcaactccTCTCAACTCCTCTCACACGCTTCTCAACTTCACGTTCCCAACTGCTCTGTCATGATTTTTtctcacaacacaaacacaacacagtacGACAACAGCATCGAGAGACTGAGAAGACAAATCtgtcacaggaaaaaaaaaagaaaaaaaaaaatggacttGTTACCCTTGTTTCCACATTCAACACACCAAGGCTGCTTTTttagaacatgtttttttgtgtttgaaatttaaaaaaaaaatgctaaaaatggaaatgaaataaACAGCAGGAAGAGATGTTGCCTGGTAGAAGTCTGGGCTGTTTCATCTCCACCTGTATTCCCTACCTTAACCTTCCCAAACTCCACTTTCCACCCCCTCCCCACCCTCCCCTGCCCCATCTTCCACCCCTCCGTCCGCTGTCTGCCGGGGGGATGAGACATGATGGGACACCTGCAGCATCTGCATTGTCCCATCAGTCTCCACTCCCCCTTGGTTTTATCATCCACACAAGCCAACGGATTGctcagttttcagttctttttttcctttttttctcttgatCCTTTTTAAGTTTGATGCTGTATTAGTTTTAGTTTgatatacattatataaaatatatgaatatgaacATCAA

Function

symbol description
faf1 Acts upstream of or within cartilage development; fin regeneration; and pharyngeal system development. Is expressed in pharyngeal arch; pharyngeal arch 1; pharyngeal arch 2; and pharyngeal arch 3-7. Orthologous to human FAF1 (Fas associated factor 1).

NR:

description
FAS-associated factor 1-like

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K20703 FAF1; FAS-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811742.1 True 3235 mRNA 0.48 19 22698080 22764088

Neighbor

gene id symbol gene type direction distance location
ttc39a ttc39a coding upstream 41054 22625085 ~ 22657026 (+)
eps15 LOC103370402 coding upstream 74545 22591643 ~ 22623535 (+)
calr LOC102308154,LOC102192544,LOC101484884,LOC100701980,LOC107393148,LOC108230540 coding upstream 108761 22584206 ~ 22589319 (+)
tor3a tor3a coding upstream 115425 22577197 ~ 22582655 (+)
osbpl9 osbpl9 coding upstream 127780 22530087 ~ 22570300 (+)
dmrta2 dmrta2 coding downstream 10920 22775008 ~ 22778191 (+)
agbl4 agbl4 coding downstream 52463 22816551 ~ 23246315 (+)
bend5 bend5,LOC102785035 coding downstream 412419 23176507 ~ 23191077 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding downstream 567690 23331778 ~ 23335697 (+)
si:ch1073-396h14.1 LOC103365213 coding downstream 655856 23419944 ~ 23454783 (+)
G97410 NA non-coding upstream 102803 22594496 ~ 22595277 (+)
G97338 NA non-coding upstream 375225 22322492 ~ 22322855 (+)
G97335 NA non-coding upstream 381722 22313648 ~ 22316358 (+)
G97297 NA non-coding upstream 523687 22158057 ~ 22174393 (+)
G97295 NA non-coding upstream 540122 22156111 ~ 22157958 (+)
LOC120565733 NA non-coding downstream 16519 22780607 ~ 22800145 (+)
G97485 elavl4,LOC107657884 non-coding downstream 101739 22865827 ~ 22870448 (+)
G97489 NA non-coding downstream 150428 22914516 ~ 22918731 (+)
G97537 NA non-coding downstream 559884 23323972 ~ 23324176 (+)
G97538 NA non-coding downstream 560171 23324259 ~ 23324499 (+)
rnf11b rnf11 other upstream 21902 22657480 ~ 22676178 (+)
LOC120566218 NA other upstream 121532 22571754 ~ 22576548 (+)
LOC120566217 NA other upstream 121878 22576129 ~ 22576202 (+)
LOC120566220 NA other upstream 122932 22575067 ~ 22575148 (+)
LOC120566221 NA other upstream 123156 22574843 ~ 22574924 (+)
spata6 spata6 other downstream 485041 23249129 ~ 23282671 (+)
LOC120565086 NA other downstream 536718 23300806 ~ 23303691 (+)
pole4 NA other downstream 557376 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 614643 23378731 ~ 23380375 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 710694 23474782 ~ 23477818 (+)

Expression


Co-expression Network