LOC120565766 (LOC107080871,LOC107654361)


Basic Information

Item Value
gene id LOC120565766
gene name LOC107080871,LOC107654361
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22000197 ~ 22002659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811779.1
TTACCTGTTTTCTTAAAAGCATTGTAATTGTCATTACAAATAAATAGCAATTCAGAATTAAAGCTTTTTTTAGTTTTCAGTCTGTACTCACAGTTTGTTAGAGAGACAACAGGTAAAGACACATTGTGAAGCATAAACTAACTTGACTGTGTGAGGAAAATGACCCAACCCAACAATAAGGTGGATTCTTGTGGCAGCCCTTCAAACTGTACTGAATGTTGTGTGACGGTATCATGTTTTGTGACCAAATTGTTCCCACAGCCACGATGAAGGCCCCGCTGCCGGTCCCTCCTCAGCTGCTCGCCCTCGCCCCACAGCTTGGGGTAGAAGAACAGGCACCTAATGTGTTGAGACAAAAGCCTGGGATAACATCAGCTCCATTTCTTCCTGAAGCTCTGCCAAGTCCAGCACCTTCTGTCCCTTTAGATGTCCCACACCAGCCTGCAGCCTCGGTCCCTGGCTATGCTCAGGATGTAGCGCAATGGAACTGCTCCCACCAGCAGAAAATTTGGATGAAGACTGAGCTGGAGGCGTTGGGGCTGTGGCCGGGGTCACGTCCTGTTCGTCATCCTATGAACATGCTGTCCTTGTGGCGTAATCCACCTCAGCCTGAGCTCATAGACTCAATCTCTGAGCTGCCGTCACCTAAATACTGTCAGCTTCATCCTTTTTTCATTTGGAAGCCGGAGCACACAATCATGGAGAGGGTAAGGAACAATTACATCTTGCCCTGCCTTCATGAATGTCCCAACCCTCAGGTAGCTTCTTCCGGCATTGGAAGGCCAAATCGGTAATGGATGAGATGAGGTGCAGCGGCAGATCACCGGAGGACATGGCTAAGCAGCTGACGGAGGCACTCCACCTTAAATATGAGAGAGCCCACCTGGCCTACCTGCTCAGTGTACAGAATGTCAGGGATGCTGAGGCAGGAGTTTACGGCCAGAGAACCATCACTGGGCTtctcagacaggcagacactCCGGCTCCATTCGGTGGATACTCCGATGCTGACGGCTGGTGTGGAGTGTCTATTTCTTCTCACTACCTGGTCGACTGCCTGGTCCGTGAGTTTCAACGGCAGGAGCAGCTCCTCACTCTGTTGCTACAGGGGACCTTTGGACAAGTTCTCAGGTCAGATCATACTCGGAAAGTGGCTAGGAAGGTGGGGCTGTCGTCTGGCACAATGTCTTCCTATGCCATAATGAACGAGAACTGGATGATCTTGAGCTGGGTGATGCTGCAGTCAGAGTGCGATCGGTCCCTCTATCCTCTGTACGAGGGGGGGCTGAGTGGCGGAGGGTGGCAGAGGAGAGGGCAAAGAGGAATTCAGCAGTGCAGCTTCCAACAGGTCGTCTGTGCAGGTTCTGTCATCAACCCCTAAAGCAGGGCCCTGACAGCCCTCACATACATGACAGCTTTCCCGGGGTACCAGGGAAATACATCTACTGCCCCTCCAGAGTGTTCTCCCTCTACAAGGCACAGGGAATGGGGAAGGAGATGACCTGGGGGGAGTTCAAACTGTCGGACTTCTATGAGACTGAAAGGGACGATGGGTcgcagagaaaaagaaatgaacaCTTCAACGTCAAATATaccctctccacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactactgtacTTAGTCAGGACtgtttcattgtgatatttgaatCTCGTGTTCTGTTCTGATCTGGCCACAAGACCTCGTCAACATCACAGGAAATGTCTCTTCCACGTccgactcctctctctctctttgtcctcctCTTACTCTGACTCTCGTTGCCTCCATGCTTGCAGAGTTCTCTAAATGGTTTACCTGAGGCCTGTTTGTAGTGCTAAGGCTCAGACTGATTGGTGTTCTCTTTTCTGTGTAAGTGTTTTCAGGTCTGTATGTAAGTTCCTACAATTGCCAGATGAGTTTTGCATTTTGAACATTTTTGAGTGTTTTTACCAATGACAACAGGAGATTTCATTTTTGAAGAAATTGTCTAATGTAAGAAaacgtgtgtagtgttttgcaaTCAGTGTGTTAAAAAATTGCAAACAAAGTGCAAAGTTGACaatgtgtttaaggtatggttacactgtg
>XM_039811780.1
TTACCTGTTTTCTTAAAAGCATTGTAATTGTCATTACAAATAAATAGCAATTCAGAATTAAAGCTTTTTTTAGTTTTCAGTCTGTACTCACAGTTTGTTAGAGAGACAACAGGTAAAGACACATTGTGAAGCATAAACTAACTTGACTGTGTGAGGAAAATGACCCAACCCAACAATAAGGTGGATTCTTGTGGCAGCCCTTCAAACTGTACTGAATGTTGTGTGACGGTATCATGTTTTGTGACCAAATTGTTCCCACAGCCACGATGAAGGCCCCGCTGCCGGTCCCTCCTCAGCTGCTCGCCCTCGCCCCACAGCTTGGGGTAGAAGAACAGGCACCTAATGTGTTGAGACAAAAGCCTGGGATAACATCAGCTCCATTTCTTCCTGAAGAGTTACCATCAGTGGAAGCACAGAGAGACACTGTCCCTGATGAAGCTCTGCCAAGTCCAGCACCTTCTGTCCCTTTAGATGTCCCACACCAGCCTGCAGCCTCGGTCCCTGGCTATGCTCAGGATGTAGCGCAATGGAACTGCTCCCACCAGCAGAAAATTTGGATGAAGACTGAGCTGGAGGCGTTGGGGCTGTGGCCGGGGTCACGTCCTGTTCGTCATCCTATGAACATGCTGTCCTTGTGGCGTAATCCACCTCAGCCTGAGCTCATAGACTCAATCTCTGAGCTGCCGTCACCTAAATACTGTCAGCTTCATCCTTTTTTCATTTGGAAGCCGGAGCACACAATCATGGAGAGGGTAAGGAACAATTACATCTTGCCCTGCCTTCATGAATGTCCCAACCCTCAGGTAGCTTCTTCCGGCATTGGAAGGCCAAATCGGTAATGGATGAGATGAGGTGCAGCGGCAGATCACCGGAGGACATGGCTAAGCAGCTGACGGAGGCACTCCACCTTAAATATGAGAGAGCCCACCTGGCCTACCTGCTCAGTGTACAGAATGTCAGGGATGCTGAGGCAGGAGTTTACGGCCAGAGAACCATCACTGGGCTtctcagacaggcagacactCCGGCTCCATTCGGTGGATACTCCGATGCTGACGGCTGGTGTGGAGTGTCTATTTCTTCTCACTACCTGGTCGACTGCCTGGTCCGTGAGTTTCAACGGCAGGAGCAGCTCCTCACTCTGTTGCTACAGGGGACCTTTGGACAAGTTCTCAGGTCAGATCATACTCGGAAAGTGGCTAGGAAGGTGGGGCTGTCGTCTGGCACAATGTCTTCCTATGCCATAATGAACGAGAACTGGATGATCTTGAGCTGGGTGATGCTGCAGTCAGAGTGCGATCGGTCCCTCTATCCTCTGTACGAGGGGGGGCTGAGTGGCGGAGGGTGGCAGAGGAGAGGGCAAAGAGGAATTCAGCAGTGCAGCTTCCAACAGGTCGTCTGTGCAGGTTCTGTCATCAACCCCTAAAGCAGGGCCCTGACAGCCCTCACATACATGACAGCTTTCCCGGGGTACCAGGGAAATACATCTACTGCCCCTCCAGAGTGTTCTCCCTCTACAAGGCACAGGGAATGGGGAAGGAGATGACCTGGGGGGAGTTCAAACTGTCGGACTTCTATGAGACTGAAAGGGACGATGGGTcgcagagaaaaagaaatgaacaCTTCAACGTCAAATATaccctctccacacacacaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactactgtacTTAGTCAGGACtgtttcattgtgatatttgaatCTCGTGTTCTGTTCTGATCTGGCCACAAGACCTCGTCAACATCACAGGAAATGTCTCTTCCACGTccgactcctctctctctctttgtcctcctCTTACTCTGACTCTCGTTGCCTCCATGCTTGCAGAGTTCTCTAAATGGTTTACCTGAGGCCTGTTTGTAGTGCTAAGGCTCAGACTGATTGGTGTTCTCTTTTCTGTGTAAGTGTTTTCAGGTCTGTATGTAAGTTCCTACAATTGCCAGATGAGTTTTGCATTTTGAACATTTTTGAGTGTTTTTACCAATGACAACAGGAGATTTCATTTTTGAAGAAATTGTCTAATGTAAGAAaacgtgtgtagtgttttgcaaTCAGTGTGTTAAAAAATTGCAAACAAAGTGCAAAGTTGACaatgtgtttaaggtatggttacactgtg

Function

NR:

description
PREDICTED: uncharacterized protein LOC107080871, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811779.1 False 2141 mRNA 0.49 3 22000197 22002659
XM_039811780.1 True 2186 mRNA 0.49 4 22000197 22002659

Neighbor

gene id symbol gene type direction distance location
LOC120565765 NA coding upstream 100 21997919 ~ 22000097 (+)
LOC120565695 NA coding upstream 20639 21967192 ~ 21979558 (+)
tnfaip8l1 tnfaip8l1,LOC104918070,LOC103363933 coding upstream 37649 21946176 ~ 21962548 (+)
ncln ncln,LOC102776228 coding upstream 90999 21895470 ~ 21909198 (+)
s1pr4 s1pr4,LOC102777112,LOC100705658,LOC107100766 coding upstream 146785 21851042 ~ 21853412 (+)
zfr2 zfr2 coding downstream 50698 22053357 ~ 22079019 (+)
matk matk,LOC102798474 coding downstream 76533 22079192 ~ 22090850 (+)
rx1 LOC101073544,LOC104924617,LOC100705124,LOC102200154,LOC101467495,LOC102301254 coding downstream 101310 22103969 ~ 22112923 (+)
LOC120565906 LOC104924615 coding downstream 116335 22118994 ~ 22124092 (+)
haus5 haus5,LOC102794657 coding downstream 121865 22124524 ~ 22134337 (+)
G97181 NA non-coding upstream 2454 21997413 ~ 21997743 (+)
G97170 cope non-coding upstream 55636 21941105 ~ 21944561 (+)
G97096 NA non-coding upstream 255516 21743413 ~ 21744681 (+)
G97064 NA non-coding upstream 323848 21658550 ~ 21676349 (+)
G97011 dmap1 non-coding upstream 626664 21372941 ~ 21373533 (+)
LOC120565815 NA non-coding downstream 3116 22005775 ~ 22007353 (+)
G97190 NA non-coding downstream 31138 22033797 ~ 22035674 (+)
G97263 NA non-coding downstream 88730 22091389 ~ 22093374 (+)
G97295 NA non-coding downstream 153452 22156111 ~ 22157958 (+)
G97297 NA non-coding downstream 155398 22158057 ~ 22174393 (+)
G97093 NA other upstream 218197 21690897 ~ 21782000 (+)
lsm7 lsm7,LOC102793261 other upstream 442466 21554894 ~ 21557731 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other upstream 558639 21411336 ~ 21441558 (+)
prkacba prkacb other upstream 1435373 20548999 ~ 20564824 (+)
G96513 NA other upstream 2468520 19530767 ~ 19531677 (+)
G97321 NA other downstream 280987 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 482852 22485511 ~ 22491235 (+)
soat1 soat1,LOC102796196 other downstream 490298 22492957 ~ 22501015 (+)
LOC120566218 NA other downstream 569095 22571754 ~ 22576548 (+)
LOC120566227 NA other downstream 569810 22572469 ~ 22572551 (+)

Expression


Co-expression Network