oma1 (oma1)


Basic Information

Item Value
gene id oma1
gene name oma1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37127785 ~ 37141592 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811820.1
ATGCTTTTACCATTTTTTATAAAGAACAGTCGCTTTTGTTCTCTTTCTGCACATCTGACATTAAACGTCCAGGTGTGCAAACAAGCTGGGCGTCCTGTGAAAAAGGCACCCTCCGTGTCTTGTCCTATCAGCTGTCCCAGAACAACAGACTGGGTTCACTTTAGAGCCACTCCGAGGGCACCGCCTCTCTGGTTCTGCAGCAATGGGAGGACGGCGTGTTTCCAGATTAGTCCCAAGACCACTTTACCTCTGCACCCTGGTCCTGTCCTGGCACAGTGTGGACATCTGTTCCACACCTCAGCCCCCGTGAGGGCCCCGCCTGCTCCTCTCATATGGCTGCTGCTCAAACCTTTGCAGAAGATCACGGCTATAATACTGGGCAGGAGTATAAGGAAGTGGTGGGTGGCTCTGCCAGCCAACCGCCGGCAGCTCCTGCGCGAATGGGTCCGGCAGCGTCGCTGGCATCTGGCAGCGGGGGCAGGCGTTGCTATGGTGATCTTAGCCCTCCTTCTCCTGACCCACCTGGATGAGTCCCCAGTGACGGGACGGACCCGCCTCCTGGTGTTCAGCAGAGAGAACTACATGGAGCTGGCAGCTCTGACCTCAGAGGCGtacaTGGAGGAGTTTGCAGAGCTGTTGGTTCCAGTCAGTGACCCTCGCCACCAGGTGGTGGAGCGGGTGGTGCAGCACCTGGCACAAAGAAACAAGGACATCCCTGAAGTGTCTGAAGTCACCTGGAGCGTCCACGTGGTGCAAAGTTCCAATGTCAATGCCTTTGTCCTACCgAACGGGAAAGTGTTCATTTTTATGGGGATGCTGGACGCTGTGGCGGATGTTCACCAGCTCACCATCGTCCTGGGACACGAGATGGCTCATGCTTTATTGGGACACTCGGCAGAACAGGCCAGTCTGTCTCATGTCGTGGACCTCCTGTCCCTTATTCTGCTGACAGCCATCTGGGCCGTGTGTCCTCGAGACAGCCTGGCTCTGCTGGGACAGTGGGTACAGGGCAAGCTTTCCCAGTTGATGTTCAGCCATCCCTTCAGTAGGAAACTGGAAGCTGAGGCTGATCAAGTTGGATTGCAGTTGGCTGCGAAGGCGTGTGCAGATGTGCGAGCAGGACCTGTATTCTGGCAGCAAATGGAAGTCCGAGACCAGCTGACAGGAGAGCCCACCTTCCCCGAGTGGCTGTCCACACACCCgtcacacagaaacagatttgCTCAGCTGGACCGCCTCATACCACAGGCTCTGGAGTTGAGGGAGAGCTGCGTCTGCCCTGCTCTACCTCCTACTGACCCTCGTGTCGTCTTCTCCAAGAGTGTCCATGAGTTGCTGGAAAACGCTAAGCACCAGGAGAGAGAAGGGCCAGAAGGGGCACGCAAGCCCCGCCTGCCCCACAGCCCGGTCTCACTCCCCACTGGATTGTCCGCGGCTCTGCTTACCCAGTCTGCCGTCCTACCTTACCCAAACGTGGATCAAGAAATTAAAGGCCCAGTCCCTTCCGTAGCTTCAGCGTTAGCGGTAACAGCCTCTGTCCCTGCTCCTGCTGAGGGGGAGGGACCCCACCCTGTGGTGCAGAGCATCAGCTGACAGCAGTGTTTTAATCCAGACTAACTGGCTTTTTTTGGATGAGTGAATGAGTCAGTGATTGTTATGTTGGTCAGCTAGCATATCCGTCAACCGTTTTCCGCTgctaaatgtttgttttcatattaAATTTCAGCGACCCTGGATGCATAGGTGGTAAAGTGGTAAAGTTTCCTCCTACCATTGCAGAGACCTAGGGTTAGTCCTTTTCTCTGCACCAAAGACTCCTTCTGTTTGCCAGCACAATGGAGGGCGGAGCTGGGGATGGTACTGTGAAAACAATTGGCTTTGGAGAAAATCTGTggaaaaagtcagcaaaaaaaataCGCTGTATTGTCTATATTAACTATAACTGAATTCAAGGCCCCTCCTAACCTTTCCCTCTACTGCAACACCCTGCTGACTGAGCTTCAGATTATGTTATTCATGCCTAGTAACTACAAAGATGCCACATTAATTAAATAACCTCGAACAGGAAAATGCCAAATGAATCTTAGTGAAGCTTCCATACATTGCCAGATTAATATGTGCATTATTCATTGACACATGGCAACAGAGTAAGcactttgtgtgtgcatgttggaGGCTTCGTCCATGGCAGGCAGAGGACATCTACATTTTAATTATGACTGCTACATTTtcatgccacacacacagcactttaTGCATTTTCTACCCTTAGGGACTTAATGGTGTAAATTTATGCCGGGTTGTACGCAGGTTTCTAAAACACAGCCTTCTGCACAGGAATGCCAATATCCACCGTCAAGCTTCGAGAAATCTTCCATGGGATTTTGTAAAATCTTATTTAACAAGGCAAGTTGACTGAGACAACATTCTTATTTACAACAACAGCCTGCGGGAGCAGGCGCACAACAAAGAGGAGGCAACAGTTATGGTTCAAATCTtggtaattgtgtgtgtgtgtgtgtgtgtgtcacaaagTAGCACACTTGGTTAAACTGTGAAATCAAAAAAGAACTGTTTTCATATGGgataaataattttatttgtGTCATTGAAATTTAGGTTCAGGGTCTGTATCAGCTTACAAAACATCAGACAACAGCTTACTTGTGCTGGGAAAGCTTTGTTTTACAACAACTGTCTATATTGTAACAAGTGGCCAGTGATAGGGTTTCCATAGAAATGTGCAATAAAAAGCCAAGGGAATATTGTTTTTTGCATATCAATAACTCAGCAACAGGAACGTGCTCTGTTTCCAAGTGgcaagcaaaaaaataaaaagcttgaAAAGAAA

Function

symbol description
oma1 Predicted to enable metalloendopeptidase activity. Involved in mitochondrial respiratory chain complex assembly. Predicted to be located in mitochondrial inner membrane. Orthologous to human OMA1 (OMA1 zinc metallopeptidase).

NR:

description
metalloendopeptidase OMA1, mitochondrial

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K23010 OMA1; metalloendopeptidase OMA1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811820.1 True 2851 mRNA 0.49 8 37127785 37141592

Neighbor

gene id symbol gene type direction distance location
mysm1 mysm1,LOC106613979 coding upstream 13561 37108573 ~ 37114224 (+)
suco suco coding upstream 20693 37047277 ~ 37107092 (+)
dnm3a dnm3 coding upstream 98197 37005441 ~ 37029588 (+)
mettl13 mettl13,LOC102788519 coding upstream 122639 36993143 ~ 37005146 (+)
rangrf rangrf,LOC102787952 coding upstream 140824 36985858 ~ 36986961 (+)
dab1a dab1,LOC106952591 coding downstream 14884 37156476 ~ 37488138 (+)
LOC120565974 NA coding downstream 350069 37491661 ~ 37512914 (+)
plpp3 plpp3,LOC103365633,LOC104959557 coding downstream 390911 37532503 ~ 37565901 (+)
usp24 usp24 coding downstream 557462 37699054 ~ 37750195 (+)
dhcr24 dhcr24,LOC102794897 coding downstream 640992 37782584 ~ 37791624 (+)
G100749 NA non-coding upstream 24896 37100787 ~ 37102889 (+)
G100747 NA non-coding upstream 80667 37046901 ~ 37047118 (+)
G100738 LOC103354147,LOC103137061,LOC106938442 non-coding upstream 84219 37039248 ~ 37043566 (+)
G100726 myoc non-coding upstream 149623 36968687 ~ 36978162 (+)
G100727 NA non-coding upstream 153736 36935167 ~ 36974049 (+)
G100847 NA non-coding downstream 57645 37199237 ~ 37199455 (+)
G100846 NA non-coding downstream 324582 37466174 ~ 37475077 (+)
LOC120566005 NA non-coding downstream 427492 37569084 ~ 37574819 (+)
G100906 NA non-coding downstream 517249 37658841 ~ 37659093 (+)
G100917 NA non-coding downstream 609269 37750861 ~ 37752138 (+)
prrc2c NA other upstream 169425 36932655 ~ 36958360 (+)
G100671 NA other upstream 428916 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 516039 36596041 ~ 36611746 (+)
smim24 NA other upstream 593203 36495484 ~ 36534582 (+)
G100568 lmnb2 other upstream 652590 36473538 ~ 36475195 (+)
G100843 NA other downstream 322322 37463914 ~ 37490072 (+)
usp46 usp46 other downstream 1724843 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 2181992 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 2312528 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 2419469 39561061 ~ 39592762 (+)

Expression


Co-expression Network